Plant Phenomics

Article	Citations
A Mechanistic Model for Estimating Rice Photosynthetic Capacity and Stomatal Conductance from Sun-Induced Chlorophyll Fluorescence	94
Deep Learning Enables Instant and Versatile Estimation of Rice Yield Using Ground-Based RGB Images	93
The Importance of Using Realistic 3D Canopy Models to Calculate Light Interception in the Field	85
MaizeField3D: A curated 3D point cloud and procedural model dataset of field-grown maize from a diversity panel	75
Phenotyping of Silique Morphology in Oilseed Rape Using Skeletonization with Hierarchical Segmentation	68
Enhancing Green Fraction Estimation in Rice and Wheat Crops: A Self-Supervised Deep Learning Semantic Segmentation Approach	59
Rice Plant Counting, Locating, and Sizing Method Based on High-Throughput UAV RGB Images	57
KDOSS-net: Knowledge distillation-based outpainting and semantic segmentation network for crop and weed images	55
Geographic-Scale Coffee Cherry Counting with Smartphones and Deep Learning	53
UAV-based spatial sampling bridges ground measurements and satellite data for multi-scale estimation of sugar beet aboveground biomass	53
Practical Identifiability of Plant Growth Models: A Unifying Framework and Its Specification for Three Local Indices	52
Identifying Regenerated Saplings by Stratifying Forest Overstory Using Airborne LiDAR Data	51
Noninvasive Abiotic Stress Phenotyping of Vascular Plant in Each Vegetative Organ View	51
Location-guided lesions representation learning via image generation for assessing plant leaf diseases severity	51
Species-specific tree structural parameters extraction via UAV RGB-LiDAR data and multimodal instance segmentation	50
Dynamic maize true leaf area index retrieval with KGCNN and TL and integrated 3D radiative transfer modeling for crop phenotyping	50
The Dissection of Nitrogen Response Traits Using Drone Phenotyping and Dynamic Phenotypic Analysis to Explore N Responsiveness and Associated Genetic Loci in Wheat	49
Maturity Classification of Rapeseed Using Hyperspectral Image Combined with Machine Learning	47
Drone-Based Digital Phenotyping to Evaluating Relative Maturity, Stand Count, and Plant Height in Dry Beans (Phaseolus vulgaris L.)	47
High-throughput plant phenotyping identifies and discriminates biotic and abiotic stresses in tomato	47
Rapid acquisition of ionomic and morphological data from plant seeds through fast X-ray fluorescence microscopy and computer vision	46
Detection and Reconstruction of Passion Fruit Branches via CNN and Bidirectional Sector Search	46
3D-OGT: 3D organ growth tracking with minimum segmentation	45
Rape Yield Estimation Considering Non-Foliar Green Organs Based on the General Crop Growth Model	44
Visualization and Quantitative Evaluation of Functional Structures of Soybean Root Nodules via Synchrotron X-ray Imaging	42

3DPotatoTwin: a paired potato tuber dataset for 3D multi-sensory fusion	40
Performance of stacking machine learning and volume model for improving corn above ground biomass prediction	40
TrichomeYOLO: A Neural Network for Automatic Maize Trichome Counting	37
Fruit Water Stress Index of Apple Measured by Means of Temperature-Annotated 3D Point Cloud	37
PDDD-PreTrain: A Series of Commonly Used Pre-Trained Models Support Image-Based Plant Disease Diagnosis	36
PREPs: An Open-Source Software for High-Throughput Field Plant Phenotyping	36
Spotibot: Rapid scoring of Botrytis lesions on rose petals using deep learning and mobile computing	35
InspectGaussian: Large-scale coarse-to-fine Gaussian reconstruction for orchard inspection robots	35
MLG-YOLO: A Model for Real-Time Accurate Detection and Localization of Winter Jujube in Complex Structured Orchard Environments	34
RGB imaging and computer vision-based approaches for identifying spike number loci for wheat	34
Wearable Sensor: An Emerging Data Collection Tool for Plant Phenotyping	34
Instance Segmentation and Berry Counting of Table Grape before Thinning Based on AS-SwinT	31
Leaf bidirectional reflectance distribution function (BRDF) prediction with phenotypic traits in four species: Development of a novel measuring and analyzing framework	30
A Multi-Target Regression Method to Predict Element Concentrations in Tomato Leaves Using Hyperspectral Imaging	29
SMICGS: A novel snapshot multispectral imaging sensor for quantitative monitoring of crop growth	29
Predictions of wheat phenotypic variability by integrating high-throughput phenotyping observations into a crop growth model	29
Transpiration responds linearly to Penman-Monteith reference evapotranspiration and varies genetically, both in individual plants and canopies, in large sorghum and pearl millet panels	29
Time-Series Field Phenotyping of Soybean Growth Analysis by Combining Multimodal Deep Learning and Dynamic Modeling	28
Boosting leaf trait estimation from reflectance spectra by elucidating the transferability of PLSR models	27
Phenotyping of Panicle Number and Shape in Rice Breeding Materials Based on Unmanned Aerial Vehicle Imagery	25
3D U-Net Segmentation Improves Root System Reconstruction from 3D MRI Images in Automated and Manual Virtual Reality Work Flows	25
Can Distributed Ledgers Help to Overcome the Need of Labeled Data for Agricultural Machine Learning Tasks?	25
GSP-AI: An AI-Powered Platform for Identifying Key Growth Stages and the Vegetative-to-Reproductive Transition in Wheat Using Trilateral Drone Imagery and Meteorological Data	24
High-throughput estimation of sugarcane phenotypic traits using UAV multispectral data under high-density planting conditions	24
Multi-sensor phenotyping of yield and yield stability for genotype selection in durum wheat	24
High-Throughput Field Plant Phenotyping: A Self-Supervised Sequential CNN Method to Segment Overlapping Plants	24
A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background	24
CLIP-TLNet: Canopy light interception prediction with Transformer-LSTM network through 3D complexity-temporal dynamics modeling	23
Segmenting vegetation from UAV images via spectral reconstruction in complex field environments	23
PhenoGazer: A high-throughput phenotyping system to track plant stress responses using hyperspectral reflectance, nighttime chlorophyll fluorescence and RGB imaging in controlled environments	22
Physiology-informed LSTM framework integrating crop model and Sentinel-2 time series for rice nitrogen status estimation	22
Quantifying Contributions of Different Factors to Canopy Photosynthesis in 2 Maize Varieties: Development of a Novel 3D Canopy Modeling Pipeline	22
Multi-granularity alignment for crop diseases detection	22
Fitting maximum crown width height of Chinese fir through ensemble learning combined with fine spatial competition	21
Functional–Structural Plant Model “GreenLab”: A State-of-the-Art Review	21
Application of Visible/Near-Infrared Spectroscopy and Hyperspectral Imaging with Machine Learning for High-Throughput Plant Heavy Metal Stress Phenotyping: A Review	21
Characterization and Identification of NPK Stress in Rice Using Terrestrial Hyperspectral Images	21
Conditional reliability of chlorophyll fluorescence for inferring photosynthesis in Ginkgo biloba: evidence from fluctuating light and drought conditions	20
PlantSpecLab: A comprehensive open-source platform for high-throughput plant spectral data processing and phenotypic modeling	20
A keypoint-based method for detecting weed growth points in corn field environments	20
CVRP: A rice image dataset with high-quality annotations for image segmentation and plant phenomics research	20
Unraveling plant phenotype to genotype associations with daily hyperspectral traits in Populus trichocarpa	20
From Neglecting to Including Cultivar-Specific Per Se Temperature Responses: Extending the Concept of Thermal Time in Field Crops	20
Plant3R: Fusing 3D feature learning with Gaussian splatting to enhance wheat plant 3D reconstruction precision	19
Noninvasive Detection of Salt Stress in Cotton Seedlings by Combining Multicolor Fluorescence–Multispectral Reflectance Imaging with EfficientNet-OB2	19
A parallel resnet-transformer and cross-modal attention network for identification of rice blast resistance using UAV-based visible-infrared imagery	19
Informed-Learning-Guided Visual Question Answering Model of Crop Disease	18
TM-WSNet: A precise segmentation method for individual rubber trees based on UAV LiDAR point cloud	18
UAV-Assisted Dynamic Monitoring of Wheat Uniformity toward Yield and Biomass Estimation	18
Pre-symptomatic diagnosis of rice blast and brown spot diseases using chlorophyll fluorescence imaging	18

Integrating UAV remote sensing and semi-supervised learning for early-stage maize seedling monitoring and geolocation	18
Benchmarking Self-Supervised Contrastive Learning Methods for Image-Based Plant Phenotyping	17
Volumetric Deep Learning-Based Precision Phenotyping of Gene-Edited Tomato for Vertical Farming	17
The blessing of Depth Anything: An almost unsupervised approach to crop segmentation with depth-informed pseudo labeling	17
Quantification of the Cumulative Shading Capacity in a Maize–Soybean Intercropping System Using an Unmanned Aerial Vehicle	17
Integrating 3D Canopy Reconstruction to Assess Photosynthetic and Carbon Sequestration Responses of Larch Plantations to Drought Stress	17
panomiX: Investigating mechanisms of trait emergence through multi-omics data integration	17
Near-infrared spectroscopy as a high-throughput phenotyping method for fusiform rust resistance in loblolly pine	17
Point Cloud Completion of Plant Leaves under Occlusion Conditions Based on Deep Learning	17
AFM-YOLOv8s: An Accurate, Fast, and Highly Robust Model for Detection of Sporangia of Plasmopara viticola with Various Morphological Variants	17
Automatic 3D Plant Organ Instance Segmentation Method Based on PointNeXt and Quickshift++	17
Combinatorial Maps, a New Framework to Model Agroforestry Systems	17
Practical Considerations and Limitations of Using Leaf and Canopy Temperature Measurements as a Stomatal Conductance Proxy: Sensitivity across Environmental Conditions, Scale, and Sample Size	16
Making the Genotypic Variation Visible: Hyperspectral Phenotyping in Scots Pine Seedlings	16
CSNet: A Count-Supervised Network via Multiscale MLP-Mixer for Wheat Ear Counting	16
Atlas-based spatiotemporal MRI phenotyping of 3D fungal spread in grapevine wood	16
Semi-supervised Counting of Grape Berries in the Field Based on Density Mutual Exclusion	16
DomAda-FruitDet: Domain-Adaptive Anchor-Free Fruit Detection Model for Auto Labeling	16
Crop/Plant Modeling Supports Plant Breeding: II. Guidance of Functional Plant Phenotyping for Trait Discovery	16
Counting Canola: Toward Generalizable Aerial Plant Detection Models	16
Cross-modal data integration and spectral optimization for enhanced individual apple tree canopy nitrogen concentration estimation using UAV remote sensing	16
Panoptic segmentation for complete labeling of fruit microstructure in 3D micro-CT images with deep learning	16
Three-Dimensional Leaf Edge Reconstruction Combining Two- and Three-Dimensional Approaches	16
WITHDRAWN: Targeted integrating hyperspectral and metabolomic data with spectral indices and metabolite content models for efficient salt-tolerant phenotype discrimination in Medicago truncatula	16
Potential of Establishing the Universal Critical Nitrogen Dilution Curve for Japonica Rice	16
Three-dimensional reconstruction of densely planted rice seedlings based on MultiView images	16
Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset	16
A Precise Image-Based Tomato Leaf Disease Detection Approach Using PLPNet	16
High-throughput phenotyping of wheat ear surface area and ear density in the field	16
Standardizing and Centralizing Datasets for Efficient Training of Agricultural Deep Learning Models	15
Automatic Root Length Estimation from Images Acquired In Situ without Segmentation	15
Bridging Time-series Image Phenotyping and Functional–Structural Plant Modeling to Predict Adventitious Root System Architecture	15
AAUConvNeXt: Enhancing Crop Lodging Segmentation with Optimized Deep Learning Architectures	15
Seeing the unseen: A novel approach to extract latent plant root traits from digital images	15
An Effective Image-Based Tomato Leaf Disease Segmentation Method Using MC-UNet	15
The Global Wheat Full Semantic Organ Segmentation (GWFSS) dataset	15
Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers	15
Classification of Plant Endogenous States Using Machine Learning-Derived Agricultural Indices	14
Determination of optimal sampling time of grape embryo rescue based on near infrared spectroscopy combined with machine learning	14
Establishment of a high-throughput field defoliation data survey strategy combined with genome-wide association studies to reveal the genetic basis of defoliation in cotton	14
SegPPD-FS: Segmenting plant pests and diseases in the wild using few-shot learning	14
StripeRust-Pocket: A Mobile-Based Deep Learning Application for Efficient Disease Severity Assessment of Wheat Stripe Rust	14
High-Throughput Spike Detection in Greenhouse Cultivated Grain Crops with Attention Mechanisms-Based Deep Learning Models	14
Combining UAV multisensor field phenotyping and genome-wide association studies to reveal the genetic basis of plant height in cotton (Gossypium hirsutum)	14
Leaf-DETR: Progressive adaptive network with lower matching cost for dense leaves detection	13
OPAL-Flow: Orientation-aware rice panicle detection and minute-scale anthesis rhythm identification under field conditions	13
Multi-Source Data Fusion Improves Time-Series Phenotype Accuracy in Maize under a Field High-Throughput Phenotyping Platform	13
To What Extent Does Yellow Rust Infestation Affect Remotely Sensed Nitrogen Status?	13
An unsupervised semantic segmentation network for wood–leaf separation in 3D point clouds	13
CornPheno: Phenotyping corn ear kernels in the wild via point query transformer	13
Concise Cascade Methods for Transgenic Rice Seed Discrimination using Spectral Phenotyping	13
DEKR-SPrior: An Efficient Bottom-Up Keypoint Detection Model for Accurate Pod Phenotyping in Soybean	13
Comparing statistical ‘phenomic prediction’ models for remote-sensing-based phenotyping of maize susceptibility to common rust	13
A Tea Buds Counting Method Based on YOLOv5 and Kalman Filter Tracking Algorithm	13
From leaf to canopy: Inversion of lettuce pigment distribution using hyperspectral imaging technology combined with deep learning algorithms	12
Panicle-Cloud: An Open and AI-Powered Cloud Computing Platform for Quantifying Rice Panicles from Drone-Collected Imagery to Enable the Classification of Yield Production in Rice	12
LenRuler: a rice-centric method for automated radicle length measurement with multicrop validation	12
Leveraging UAV hyperspectral imaging for crop physiology and biochemistry: A comprehensive review of feature extraction and selection methods	12
Handling the Challenges of Small-Scale Labeled Data and Class Imbalances in Classifying the N and K Statuses of Rubber Leaves Using Hyperspectroscopy Techniques	12
A Field-to-Parameter Pipeline for Analyzing and Simulating Root System Architecture of Woody Perennials: Application to Grapevine Rootstocks	12
XFruitSeg—A general plant fruit segmentation model based on CT imaging	12
Combining High-Resolution Imaging, Deep Learning, and Dynamic Modeling to Separate Disease and Senescence in Wheat Canopies	12
DC2Net: An Asian Soybean Rust Detection Model Based on Hyperspectral Imaging and Deep Learning	12
FCOS-LSC: A Novel Model for Green Fruit Detection in a Complex Orchard Environment	12
Phenotyping of Salvia miltiorrhiza Roots Reveals Associations between Root Traits and Bioactive Components	12
Innovative 3D photosynthetic trait assessment of slash pine using drone-LiDAR fusion and machine learning algorithms	11
ExtSpecR: An R Package and Tool for Extracting Tree Spectra from UAV-Based Remote Sensing	11
Global Wheat Head Detection Challenges: Winning Models and Application for Head Counting	11
RootXplorer: A computer vision-based 3D phenotyping platform for high-throughput quantification and spatio-temporal analysis of root system penetrability	11
Multi-Scale Attention Network for Vertical Seed Distribution in Soybean Breeding Fields	11
Prediction of Needle Physiological Traits Using UAV Imagery for Breeding Selection of Slash Pine	11
SDC-DeepLabv3+: Lightweight and Precise Localization Algorithm for Safflower-Harvesting Robots	11
Three-Dimensional Modeling of Maize Canopies Based on Computational Intelligence	10
Spatially resolved analysis of growth dynamics in pome and drupe fruits of Rosaceae using 3D Gaussian Splatting	10
Rapid diagnosis of herbicidal activity and mode of action using spectral image analysis and machine learning	10
WPDSI: A deep learning method for wheat phenology detection from single-temporal images	10
Bio-Master: Design and Validation of a High-Throughput Biochemical Profiling Platform for Crop Canopies	10
Affordable Phenotyping at the Edge for High-Throughput Detection of Hypersensitive Reaction Involving Cotyledon Loss	10
Pleiotropy Structures Plant Height and Seed Weight Scaling in Barley despite Long History of Domestication and Breeding Selection	10
Using UAV-Based Temporal Spectral Indices to Dissect Changes in the Stay-Green Trait in Wheat	10

Channel Attention GAN-Based Synthetic Weed Generation for Precise Weed Identification	10
Advancements in Imaging Sensors and AI for Plant Stress Detection: A Systematic Literature Review	10
Knowledge Distillation Facilitates the Lightweight and Efficient Plant Diseases Detection Model	10
LeafGen: Structure-aware Leaf Image Generation for Annotation-free Leaf Instance Segmentation	10
Erratum to “Phenotypic Analysis of Diseased Plant Leaves Using Supervised and Weakly Supervised Deep Learning”	10
High-Resolution Disease Phenotyping Reveals Distinct Resistance Mechanisms of Tomato Crop Wild Relatives against Sclerotinia sclerotiorum	9
One to All: Toward a Unified Model for Counting Cereal Crop Heads Based on Few-Shot Learning	9
Application of an Improved 2-Dimensional High-Throughput Soybean Root Phenotyping Platform to Identify Novel Genetic Variants Regulating Root Architecture Traits	9
Synthetic-augmented multimodal deep learning fuses dual-angle RGB images and phenology to unlock genotype-informative canopy structural trait in wheat	9
Interaction of Genotype, Environment, and Management on Organ-Specific Critical Nitrogen Dilution Curve in Wheat	9
Quantification of Photosynthetic Pigments in Neopyropia yezoensis Using Hyperspectral Imagery	9
Diversifying Resistance Mechanisms in Cereal Crops Using Microphenomics	9
Self-adaptive individual tree modeling based on skeleton graph optimization and fractal self-similarity	9
3D reconstruction analysis of maize-soybean intercropping competition under water stress	9
A Strategy for the Acquisition and Analysis of Image-Based Phenome in Rice during the Whole Growth Period	9
Exploring the depth of the maize canopy LAI detected by spectroscopy based on simulations and in situ measurements	9
A High-Throughput Method for Accurate Extraction of Intact Rice Panicle Traits	9
Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa	9
Genetic resolution of multi-level plant height in common wheat using the 3D canopy model from ultra-low altitude unmanned aerial vehicle imagery	9
Toward Real Scenery: A Lightweight Tomato Growth Inspection Algorithm for Leaf Disease Detection and Fruit Counting	8
Local and Global Feature-Aware Dual-Branch Networks for Plant Disease Recognition	8
Auto-LIA: The Automated Vision-Based Leaf Inclination Angle Measurement System Improves Monitoring of Plant Physiology	8
Phenotyping Alfalfa (Medicago sativa L.) Root Structure Architecture via Integrating Confident Machine Learning with ResNet-18	8
The Rapid Anatomics Tool (RAT): A low-cost root anatomical phenotyping platform reveals changes in root anatomy along the root axis	8
ChatLeafDisease: a chain-of-thought prompting approach for crop disease classification using large language models	8
Awn Image Analysis and Phenotyping Using BarbNet	8
CucumberAI: Cucumber Fruit Morphology Identification System Based on Artificial Intelligence	8
Improved Field-Based Soybean Seed Counting and Localization with Feature Level Considered	8
Bayesian adaptive sampling: A smart approach for affordable germination phenotyping	8
Phenotyping Key Fruit Quality Traits in Olive Using RGB Images and Back Propagation Neural Networks	8
Analyzing Changes in Maize Leaves Orientation due to GxExM Using an Automatic Method from RGB Images	8
Winter wheat yield prediction using UAV-based multivariate time series data and variate-independent tokenization	8