Plant Phenomics

Article	Citations
KDOSS-net: Knowledge distillation-based outpainting and semantic segmentation network for crop and weed images	93
Robust High-Throughput Phenotyping with Deep Segmentation Enabled by a Web-Based Annotator	75
A Mechanistic Model for Estimating Rice Photosynthetic Capacity and Stomatal Conductance from Sun-Induced Chlorophyll Fluorescence	65
MaizeField3D: A Curated 3D Point Cloud and Procedural Model Dataset of Field-Grown Maize from a Diversity Panel	65
Phenotyping of Silique Morphology in Oilseed Rape Using Skeletonization with Hierarchical Segmentation	63
Rice Plant Counting, Locating, and Sizing Method Based on High-Throughput UAV RGB Images	61
Enhancing Green Fraction Estimation in Rice and Wheat Crops: A Self-Supervised Deep Learning Semantic Segmentation Approach	59
The Importance of Using Realistic 3D Canopy Models to Calculate Light Interception in the Field	58
Deep Learning Enables Instant and Versatile Estimation of Rice Yield Using Ground-Based RGB Images	57
Dynamic maize true leaf area index retrieval with KGCNN and TL and integrated 3D radiative transfer modeling for crop phenotyping	44
Location-guided lesions representation learning via image generation for assessing plant leaf diseases severity	44
Practical Identifiability of Plant Growth Models: A Unifying Framework and Its Specification for Three Local Indices	43
Geographic-Scale Coffee Cherry Counting with Smartphones and Deep Learning	43
Identifying Regenerated Saplings by Stratifying Forest Overstory Using Airborne LiDAR Data	43
Enabling Breeding Selection for Biomass in Slash Pine Using UAV-Based Imaging	41
Noninvasive Abiotic Stress Phenotyping of Vascular Plant in Each Vegetative Organ View	40
Detection and Reconstruction of Passion Fruit Branches via CNN and Bidirectional Sector Search	39
How Useful Is Image-Based Active Learning for Plant Organ Segmentation?	39
Rape Yield Estimation Considering Non-Foliar Green Organs Based on the General Crop Growth Model	38
Drone-Based Digital Phenotyping to Evaluating Relative Maturity, Stand Count, and Plant Height in Dry Beans (Phaseolus vulgaris L.)	37
EasyDAM_V2: Efficient Data Labeling Method for Multishape, Cross-Species Fruit Detection	37
Visualization and Quantitative Evaluation of Functional Structures of Soybean Root Nodules via Synchrotron X-ray Imaging	37
3DPotatoTwin: a paired potato tuber dataset for 3D multi-sensory fusion	36
3dCAP-Wheat: An Open-Source Comprehensive Computational Framework Precisely Quantifies Wheat Foliar, Nonfoliar, and Canopy Photosynthesis	36
Performance of stacking machine learning and volume model for improving corn above ground biomass prediction	36

Rapid acquisition of ionomic and morphological data from plant seeds through fast X-ray fluorescence microscopy and computer vision	35
Maturity Classification of Rapeseed Using Hyperspectral Image Combined with Machine Learning	33
The Dissection of Nitrogen Response Traits Using Drone Phenotyping and Dynamic Phenotypic Analysis to Explore N Responsiveness and Associated Genetic Loci in Wheat	33
High-throughput plant phenotyping identifies and discriminates biotic and abiotic stresses in tomato	33
Fruit Water Stress Index of Apple Measured by Means of Temperature-Annotated 3D Point Cloud	32
Assessing the Storage Root Development of Cassava with a New Analysis Tool	32
Spotibot: Rapid scoring of Botrytis lesions on rose petals using deep learning and mobile computing	32
TrichomeYOLO: A Neural Network for Automatic Maize Trichome Counting	31
PREPs: An Open-Source Software for High-Throughput Field Plant Phenotyping	31
PDDD-PreTrain: A Series of Commonly Used Pre-Trained Models Support Image-Based Plant Disease Diagnosis	31
MLG-YOLO: A Model for Real-Time Accurate Detection and Localization of Winter Jujube in Complex Structured Orchard Environments	30
RGB imaging and computer vision-based approaches for identifying spike number loci for wheat	30
Instance Segmentation and Berry Counting of Table Grape before Thinning Based on AS-SwinT	29
Wearable Sensor: An Emerging Data Collection Tool for Plant Phenotyping	28
Boosting leaf trait estimation from reflectance spectra by elucidating the transferability of PLSR models	27
SMICGS: A novel snapshot multispectral imaging sensor for quantitative monitoring of crop growth	26
Time-Series Field Phenotyping of Soybean Growth Analysis by Combining Multimodal Deep Learning and Dynamic Modeling	26
Predictions of wheat phenotypic variability by integrating high-throughput phenotyping observations into a crop growth model	26
Leaf bidirectional reflectance distribution function (BRDF) prediction with phenotypic traits in four species: Development of a novel measuring and analyzing framework	25
A Multi-Target Regression Method to Predict Element Concentrations in Tomato Leaves Using Hyperspectral Imaging	25
Phenotyping of Panicle Number and Shape in Rice Breeding Materials Based on Unmanned Aerial Vehicle Imagery	24
Can Distributed Ledgers Help to Overcome the Need of Labeled Data for Agricultural Machine Learning Tasks?	24
High-Throughput Estimation of Sugarcane Phenotypic Traits Using UAV Multispectral Data Under High-Density Planting Conditions	23
Multi-granularity alignment for crop diseases detection	23
A Generic Model to Estimate Wheat LAI over Growing Season Regardless of the Soil-Type Background	22
3D U-Net Segmentation Improves Root System Reconstruction from 3D MRI Images in Automated and Manual Virtual Reality Work Flows	22
Quantifying Contributions of Different Factors to Canopy Photosynthesis in 2 Maize Varieties: Development of a Novel 3D Canopy Modeling Pipeline	21
High-Throughput Field Plant Phenotyping: A Self-Supervised Sequential CNN Method to Segment Overlapping Plants	21
PhenoGazer: A high-throughput phenotyping system to track plant stress responses using hyperspectral reflectance, nighttime chlorophyll fluorescence and RGB imaging in controlled environments	21
Characterization and Identification of NPK Stress in Rice Using Terrestrial Hyperspectral Images	21
Segmenting vegetation from UAV images via spectral reconstruction in complex field environments	20
Fitting maximum crown width height of Chinese fir through ensemble learning combined with fine spatial competition	19
Application of Visible/Near-Infrared Spectroscopy and Hyperspectral Imaging with Machine Learning for High-Throughput Plant Heavy Metal Stress Phenotyping: A Review	19
Noninvasive Detection of Salt Stress in Cotton Seedlings by Combining Multicolor Fluorescence–Multispectral Reflectance Imaging with EfficientNet-OB2	19
GSP-AI: An AI-Powered Platform for Identifying Key Growth Stages and the Vegetative-to-Reproductive Transition in Wheat Using Trilateral Drone Imagery and Meteorological Data	19
Functional–Structural Plant Model “GreenLab”: A State-of-the-Art Review	19
TM-WSNet: A precise segmentation method for individual rubber trees based on UAV LiDAR point cloud	18
A keypoint-based method for detecting weed growth points in corn field environments	17
PlantSpecLab: A Comprehensive Open-Source Platform for High-Throughput Plant Spectral Data Processing and Phenotypic Modeling	17
Informed-Learning-Guided Visual Question Answering Model of Crop Disease	17
CVRP: A rice image dataset with high-quality annotations for image segmentation and plant phenomics research	17
Integrating UAV remote sensing and semi-supervised learning for early-stage maize seedling monitoring and geolocation	17
Automatic 3D Plant Organ Instance Segmentation Method Based on PointNeXt and Quickshift++	16
From Neglecting to Including Cultivar-Specific Per Se Temperature Responses: Extending the Concept of Thermal Time in Field Crops	16
Integrating 3D Canopy Reconstruction to Assess Photosynthetic and Carbon Sequestration Responses of Larch Plantations to Drought Stress	16
Pre-symptomatic diagnosis of rice blast and brown spot diseases using chlorophyll fluorescence imaging	16
panomiX: Investigating mechanisms of trait emergence through multi-omics data integration	16
Quantification of the Cumulative Shading Capacity in a Maize–Soybean Intercropping System Using an Unmanned Aerial Vehicle	16
UAV-Assisted Dynamic Monitoring of Wheat Uniformity toward Yield and Biomass Estimation	16
Volumetric Deep Learning-Based Precision Phenotyping of Gene-Edited Tomato for Vertical Farming	15

Point Cloud Completion of Plant Leaves under Occlusion Conditions Based on Deep Learning	15
AFM-YOLOv8s: An Accurate, Fast, and Highly Robust Model for Detection of Sporangia of Plasmopara viticola with Various Morphological Variants	14
Combinatorial Maps, a New Framework to Model Agroforestry Systems	14
The blessing of Depth Anything: An almost unsupervised approach to crop segmentation with depth-informed pseudo labeling	14
Semi-supervised Counting of Grape Berries in the Field Based on Density Mutual Exclusion	14
Benchmarking Self-Supervised Contrastive Learning Methods for Image-Based Plant Phenotyping	14
Root System Traits Contribute to Variability and Plasticity in Response to Phosphorus Fertilization in 2 Field-Grown Sorghum [Sorghum bicolor (L.) Moench] Cultivars	13
A Precise Image-Based Tomato Leaf Disease Detection Approach Using PLPNet	13
CSNet: A Count-Supervised Network via Multiscale MLP-Mixer for Wheat Ear Counting	13
Near-infrared spectroscopy as a high-throughput phenotyping method for fusiform rust resistance in loblolly pine	13
Three-Dimensional Leaf Edge Reconstruction Combining Two- and Three-Dimensional Approaches	13
The Global Wheat Full Semantic Organ Segmentation (GWFSS) dataset	13
Panoptic segmentation for complete labeling of fruit microstructure in 3D micro-CT images with deep learning	13
Corrigendum to “Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry”	13
Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset	13
Potential of Establishing the Universal Critical Nitrogen Dilution Curve for Japonica Rice	13
Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers	12
DomAda-FruitDet: Domain-Adaptive Anchor-Free Fruit Detection Model for Auto Labeling	12
Practical Considerations and Limitations of Using Leaf and Canopy Temperature Measurements as a Stomatal Conductance Proxy: Sensitivity across Environmental Conditions, Scale, and Sample Size	12
Making the Genotypic Variation Visible: Hyperspectral Phenotyping in Scots Pine Seedlings	12
An Effective Image-Based Tomato Leaf Disease Segmentation Method Using MC-UNet	12
Counting Canola: Toward Generalizable Aerial Plant Detection Models	12
Crop/Plant Modeling Supports Plant Breeding: II. Guidance of Functional Plant Phenotyping for Trait Discovery	12
Classification of Plant Endogenous States Using Machine Learning-Derived Agricultural Indices	12
Bridging Time-series Image Phenotyping and Functional–Structural Plant Modeling to Predict Adventitious Root System Architecture	12
Three-dimensional reconstruction of densely planted rice seedlings based on MultiView images	12
WITHDRAWN: Targeted integrating hyperspectral and metabolomic data with spectral indices and metabolite content models for efficient salt-tolerant phenotype discrimination in Medicago truncatula	12
Determination of optimal sampling time of grape embryo rescue based on near infrared spectroscopy combined with machine learning	11
SegPPD-FS: Segmenting plant pests and diseases in the wild using few-shot learning	11
Standardizing and Centralizing Datasets for Efficient Training of Agricultural Deep Learning Models	11
Seeing the unseen: A novel approach to extract latent plant root traits from digital images	11
Combining UAV multisensor field phenotyping and genome-wide association studies to reveal the genetic basis of plant height in cotton (Gossypium hirsutum)	11
Automatic Root Length Estimation from Images Acquired In Situ without Segmentation	11
AAUConvNeXt: Enhancing Crop Lodging Segmentation with Optimized Deep Learning Architectures	11
Dynamic Color Transform Networks for Wheat Head Detection	11
StripeRust-Pocket: A Mobile-Based Deep Learning Application for Efficient Disease Severity Assessment of Wheat Stripe Rust	10
Handling the Challenges of Small-Scale Labeled Data and Class Imbalances in Classifying the N and K Statuses of Rubber Leaves Using Hyperspectroscopy Techniques	10
A Tea Buds Counting Method Based on YOLOv5 and Kalman Filter Tracking Algorithm	10
Concise Cascade Methods for Transgenic Rice Seed Discrimination using Spectral Phenotyping	10
High-Throughput Spike Detection in Greenhouse Cultivated Grain Crops with Attention Mechanisms-Based Deep Learning Models	10
PSegNet: Simultaneous Semantic and Instance Segmentation for Point Clouds of Plants	10
Establishment of a high-throughput field defoliation data survey strategy combined with genome-wide association studies to reveal the genetic basis of defoliation in cotton	10
An unsupervised semantic segmentation network for wood–leaf separation in 3D point clouds	10
To What Extent Does Yellow Rust Infestation Affect Remotely Sensed Nitrogen Status?	10
Multi-Source Data Fusion Improves Time-Series Phenotype Accuracy in Maize under a Field High-Throughput Phenotyping Platform	10
CornPheno: Phenotyping corn ear kernels in the wild via point query transformer	10
DC2Net: An Asian Soybean Rust Detection Model Based on Hyperspectral Imaging and Deep Learning	9
DEKR-SPrior: An Efficient Bottom-Up Keypoint Detection Model for Accurate Pod Phenotyping in Soybean	9
XFruitSeg—A general plant fruit segmentation model based on CT imaging	9
Global Wheat Head Detection Challenges: Winning Models and Application for Head Counting	9
Multi-Scale Attention Network for Vertical Seed Distribution in Soybean Breeding Fields	9
From leaf to canopy: Inversion of lettuce pigment distribution using hyperspectral imaging technology combined with deep learning algorithms	9
Comparing statistical ‘phenomic prediction’ models for remote-sensing-based phenotyping of maize susceptibility to common rust	9
Panicle-Cloud: An Open and AI-Powered Cloud Computing Platform for Quantifying Rice Panicles from Drone-Collected Imagery to Enable the Classification of Yield Production in Rice	9
Phenotyping of Salvia miltiorrhiza Roots Reveals Associations between Root Traits and Bioactive Components	9
RootXplorer: A computer vision-based 3D phenotyping platform for high-throughput quantification and spatio-temporal analysis of root system penetrability	9
Prediction of Needle Physiological Traits Using UAV Imagery for Breeding Selection of Slash Pine	9
Combining High-Resolution Imaging, Deep Learning, and Dynamic Modeling to Separate Disease and Senescence in Wheat Canopies	9
LenRuler: a rice-centric method for automated radicle length measurement with multicrop validation	9
Unsupervised Plot-Scale LAI Phenotyping via UAV-Based Imaging, Modelling, and Machine Learning	9
SDC-DeepLabv3+: Lightweight and Precise Localization Algorithm for Safflower-Harvesting Robots	9
A Field-to-Parameter Pipeline for Analyzing and Simulating Root System Architecture of Woody Perennials: Application to Grapevine Rootstocks	9
Objective Phenotyping of Root System Architecture Using Image Augmentation and Machine Learning in Alfalfa (Medicago sativa L.)	8
Advancements in Imaging Sensors and AI for Plant Stress Detection: A Systematic Literature Review	8
High-Resolution Disease Phenotyping Reveals Distinct Resistance Mechanisms of Tomato Crop Wild Relatives against Sclerotinia sclerotiorum	8
Three-Dimensional Modeling of Maize Canopies Based on Computational Intelligence	8
Leveraging UAV Hyperspectral Imaging for Crop Physiology and Biochemistry: A Comprehensive Review of Feature Extraction and Selection Methods	8
ExtSpecR: An R Package and Tool for Extracting Tree Spectra from UAV-Based Remote Sensing	8
Channel Attention GAN-Based Synthetic Weed Generation for Precise Weed Identification	8
Quantification of Photosynthetic Pigments in Neopyropia yezoensis Using Hyperspectral Imagery	8
Rapid diagnosis of herbicidal activity and mode of action using spectral image analysis and machine learning	8
Erratum to “Phenotypic Analysis of Diseased Plant Leaves Using Supervised and Weakly Supervised Deep Learning”	8
Bio-Master: Design and Validation of a High-Throughput Biochemical Profiling Platform for Crop Canopies	8
Pleiotropy Structures Plant Height and Seed Weight Scaling in Barley despite Long History of Domestication and Breeding Selection	8
Exploring the depth of the maize canopy LAI detected by spectroscopy based on simulations and in situ measurements	8
LeafGen: Structure-aware Leaf Image Generation for Annotation-free Leaf Instance Segmentation	8
FCOS-LSC: A Novel Model for Green Fruit Detection in a Complex Orchard Environment	8
Affordable Phenotyping at the Edge for High-Throughput Detection of Hypersensitive Reaction Involving Cotyledon Loss	8
WPDSI: A deep learning method for wheat phenology detection from single-temporal images	7
One to All: Toward a Unified Model for Counting Cereal Crop Heads Based on Few-Shot Learning	7

Application of an Improved 2-Dimensional High-Throughput Soybean Root Phenotyping Platform to Identify Novel Genetic Variants Regulating Root Architecture Traits	7
Phenotyping Key Fruit Quality Traits in Olive Using RGB Images and Back Propagation Neural Networks	7
Interaction of Genotype, Environment, and Management on Organ-Specific Critical Nitrogen Dilution Curve in Wheat	7
Knowledge Distillation Facilitates the Lightweight and Efficient Plant Diseases Detection Model	7
Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa	7
Self-adaptive individual tree modeling based on skeleton graph optimization and fractal self-similarity	7
Genetic resolution of multi-level plant height in common wheat using the 3D canopy model from ultra-low altitude unmanned aerial vehicle imagery	7
A High-Throughput Method for Accurate Extraction of Intact Rice Panicle Traits	7
Using UAV-Based Temporal Spectral Indices to Dissect Changes in the Stay-Green Trait in Wheat	7
ChatLeafDisease: a chain-of-thought prompting approach for crop disease classification using large language models	7
Diversifying Resistance Mechanisms in Cereal Crops Using Microphenomics	7
A Strategy for the Acquisition and Analysis of Image-Based Phenome in Rice during the Whole Growth Period	7
End-to-End Fusion of Hyperspectral and Chlorophyll Fluorescence Imaging to Identify Rice Stresses	6
Auto-LIA: The Automated Vision-Based Leaf Inclination Angle Measurement System Improves Monitoring of Plant Physiology	6
UAV-LiDAR high-throughput time-series phenotyping and genome-wide association analysis reveal the genetic basis of plant height in peanut (Arachis hypogaea L.)	6
Winter wheat yield prediction using UAV-based multivariate time series data and variate-independent tokenization	6
Toward Real Scenery: A Lightweight Tomato Growth Inspection Algorithm for Leaf Disease Detection and Fruit Counting	6
Analyzing Changes in Maize Leaves Orientation due to GxExM Using an Automatic Method from RGB Images	6
Deep Learning for Sorghum Yield Forecasting using Uncrewed Aerial Systems and Lab-Derived Imagery	6
Structural parameter determination and pruning pattern analysis of pear tree shoots for dormant pruning	6
Bayesian adaptive sampling: A smart approach for affordable germination phenotyping	6
Local and Global Feature-Aware Dual-Branch Networks for Plant Disease Recognition	6
Deep Learning Methods Using Imagery from a Smartphone for Recognizing Sorghum Panicles and Counting Grains at a Plant Level	6
Shortwave Radiation Calculation for Forest Plots Using Airborne LiDAR Data and Computer Graphics	6
Awn Image Analysis and Phenotyping Using BarbNet	6
The Rapid Anatomics Tool (RAT): A low-cost root anatomical phenotyping platform reveals changes in root anatomy along the root axis	6
CucumberAI: Cucumber Fruit Morphology Identification System Based on Artificial Intelligence	6