OOIR: Observatory of International Research

Papers

(The TQCC of Molecular Omics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology	97
Multi-omics data integration considerations and study design for biological systems and disease	84
Metabolomics: small molecules that matter more	67
Metabolomics in infectious diseases and drug discovery	62
Context contribution to the intermolecular recognition of human ACE2-derived peptides by SARS-CoV-2 spike protein: implications for improving the peptide affinity but not altering the peptide specific	41
Data-independent acquisition-based proteome and phosphoproteome profiling across six melanoma cell lines reveals determinants of proteotypes	26
Cerebrospinal fluid lipidomics for biomarkers of Alzheimer's disease	21
A novel multi-omics-based highly accurate prediction of symptoms, comorbid conditions, and possible long-term complications of COVID-19	21
Mechanistic models of microbial community metabolism	20
Glycomics & Glycoproteomics: From Analytics to Function	20
Determination of hypoxia signature to predict prognosis and the tumor immune microenvironment in melanoma	20
The robust NMR toolbox for metabolomics	19
Plant proteomic research for improvement of food crops under stresses: a review	18
Tissue metabolic profiling reveals major metabolic alteration in colorectal cancer	17
Extensive heterogeneity of glycopeptides in plasma revealed by deep glycoproteomic analysis using size-exclusion chromatography	16
The state of the art in plant lipidomics	16
The pan-cancer analysis of the two types of uterine cancer uncovered clinical and prognostic associations with m6A RNA methylation regulators	14
Transcriptomic sequencing reveals the response of Dunaliella salina to copper stress via the increased photosynthesis and carbon mechanism	14
Applications of lipidomics in marine organisms: progress, challenges and future perspectives	13
Advances in stable isotope labeling: dynamic labeling for spatial and temporal proteomic analysis	13
N-Linked glycosylation profiles of therapeutic induced senescent (TIS) triple negative breast cancer cells (TNBC) and their extracellular vesicle (EV) progeny	12
Laser capture microdissection-capillary zone electrophoresis-tandem mass spectrometry (LCM-CZE-MS/MS) for spatially resolved top-down proteomics: a pilot study of zebrafish brain	12
Iron-meditated fungal starvation by lupine rhizosphere-associated and extremotolerant Streptomyces sp. S29 desferrioxamine production	11
Proteomics in idiopathic pulmonary fibrosis: the quest for biomarkers	11
Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1–CoREST interactome during embryonic stem cell differentiation	11

4D-quantitative proteomics signature of asthenozoospermia and identification of extracellular matrix protein 1 as a novel biomarker for sperm motility	11
BGMSDDA: a bipartite graph diffusion algorithm with multiple similarity integration for drug–disease association prediction	10
Food authentication: truffle species classification by non-targeted lipidomics analyses using mass spectrometry assisted by ion mobility separation	10
A 9-gene biomarker panel identifies bacterial coinfections in culture-negative COVID-19 cases	10
Macrophages secrete murinoglobulin-1 and galectin-3 to regulate neutrophil degranulation after myocardial infarction	9
Deciphering O-glycoprotease substrate preferences with O-Pair Search	9
A proteomic view on lysosomes	9
NMR-based plasma metabolomics of adult B-cell acute lymphoblastic leukemia	9
Metabolomics reveals the impact of the saturation of dietary lipids on the aging and longevity of C. elegans	9
Comprehensive comparison of sample preparation workflows for proteomics	8
Cleavable linkers and their application in MS-based target identification	8
Integrated proteomic and metabolomic analyses of the mitochondrial neurodegenerative disease MELAS	8
Enhanced detection and annotation of small molecules in metabolomics using molecular-network-oriented parameter optimization	8
Targeting coenzyme Q10 synthesis overcomes bortezomib resistance in multiple myeloma	8
Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin	8
Multi-omics data integration reveals correlated regulatory features of triple negative breast cancer	8
Interrogating the transcriptome with metabolically incorporated ribonucleosides	7
NMR metabolomic and microarray-based transcriptomic data integration identifies unique molecular signatures of hypersensitivity pneumonitis	7
Integrative miRNA–mRNA functional analysis identifies miR-182 as a potential prognostic biomarker in breast cancer	7
The miR-4732-5p/XPR1 axis suppresses the invasion, metastasis, and epithelial–mesenchymal transition of lung adenocarcinoma via the PI3K/Akt/GSK3β/Snail pathway	7
Transcriptome features of striated muscle aging and predictability of protein level changes	7
Metabolomic analysis of honey bee (Apis mellifera L.) response to glyphosate exposure	7
Focus on the molecular mechanisms of cisplatin resistance based on multi-omics approaches	7
An NMR-based metabolomics study on sea anemones Exaiptasia diaphana (Rapp, 1829) with atrazine exposure	7
Comparative evaluation of long non-coding RNA-based biomarkers in the urinary sediment and urinary exosomes for non-invasive diagnosis of bladder cancer	7
Cleaning the molecular machinery of cells via proteostasis, proteolysis and endocytosis selectively, effectively, and precisely: intracellular self-defense and cellular perturbations	7
Quantitative proteomic analysis of MDCK cell adhesion	7
Omics technologies for high-throughput-screening of cell–biomaterial interactions	7
Computational approaches leveraging integrated connections of multi-omic data toward clinical applications	7
Nuciferine attenuates acute ischemic stroke in a rat model: a metabolomic approach for the mechanistic study	6
Differential N-glycosylation profiling of formalin-fixed paraffin-embedded (FFPE) invasive ductal carcinoma tissues using MALDI-TOF-MS	6
Integrated multi-omics analyses of microbial communities: a review of the current state and future directions	6
Differential profiles of HDAC1 substrates and associated proteins in breast cancer cells revealed by trapping	6
Identification of novel biomarkers for intracerebral hemorrhagevialong noncoding RNA-associated competing endogenous RNA network	6
Phosphoproteomic analysis reveals the effects of sleep deprivation on the hippocampus in mice	6
iDHS-DASTS: identifying DNase I hypersensitive sites based on LASSO and stacking learning	6
Delineating toxicity mechanisms associated with MRI contrast enhancement through a multidimensional toxicogenomic profiling of gadolinium	6
Graphene oxide links alterations of anti-viral signaling pathways with lipid metabolism via suppressing TLR3 in vascular smooth muscle cells	6
β-Adrenoceptor regulation of metabolism in U937 derived macrophages	6
In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles	5
MS-based proteomics for comprehensive investigation of proteinO-GlcNAcylation	5
Spatial proteomic alterations detected via MALDI-MS imaging implicate neuronal loss in a Huntington's disease mouse (YAC128) brain	5
Investigation of cattle plasma proteome in response to pain and inflammation using next generation proteomics technique, SWATH-MS	5
Systematic investigation of mouse models of Parkinson's disease by transcriptome mapping on a brain-specific genome-scale metabolic network	5
Butyrate promotes C2C12 myoblast proliferation by activating ERK/MAPK pathway	5
Prediction of cancer dependencies from expression data using deep learning	5
Integrated proteomics and phosphoproteomics reveal perturbed regulative pathways in pancreatic ductal adenocarcinoma	5
Multi-omic characterisation ofStreptomyces hygroscopicusNRRL 30439: detailed assessment of its secondary metabolic potential	5
The phosphoproteome of rice leaves responds to water and nitrogen supply	5
Comprehensive expression profiles of CircRNAs, LncRNAs, and mRNAs in PBMCs from patients with the ossification of the posterior longitudinal ligament	5

Propionate as the preferred carbon source to produce 3-indoleacetic acid inB. subtilis: comparative flux analysis using five carbon sources	5
Analysis of pancreatic extracellular matrix protein post-translational modifications via electrostatic repulsion-hydrophilic interaction chromatography coupled with mass spectrometry	5
Microarray investigation of glycan remodeling during macrophage polarization reveals α2,6 sialic acid as an anti-inflammatory indicator	5
N-Glycosylation in isolated rat nerve terminals	5
Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection	5
Candidate kinases for adipogenesis and osteoblastogenesis from human bone marrow mesenchymal stem cells	5
Early-stage responses toPlasmodiophora brassicaeat the transcriptome and metabolome levels in clubroot resistant and susceptible oilseedBrassica napus	4
LC-MS-based metabolomics reveals the in vivo effect of Shegan Mahuang Decoction in an OVA-induced rat model of airway hyperresponsiveness	4
Metabolomics analysis provides new insights into the medicinal value of flavonoids in tobacco leaves	4
Defining atherosclerotic plaque biology by mass spectrometry-based omics approaches	4
Proteomic changes associated with racial background and sepsis survival outcomes	4
Lnc-TMEM132D-AS1 as a potential therapeutic target for acquired resistance to osimertinib in non-small-cell lung cancer	4
Plasma extracellular vesicles microRNA-208b-3p and microRNA-143-3p as novel biomarkers for sudden cardiac death prediction in acute coronary syndrome	4
A comparative performance evaluation of imputation methods in spatially resolved transcriptomics data	4
Proteomic and metabolomic profiling of acute and chronic stress events associated with military exercises	4
The application of omics techniques to evaluate the effects of Tanshinone IIA on dextran sodium sulfate induced ulcerative colitis	4
Activation of KLF6 by titanate nanofibers and regulatory roles of KLF6 on ATF3 in the endothelial monolayer and mouse aortas	4
Targeted metabolomics reveals dynamic portrayal of amino acids and derivatives in triple-negative breast cancer cells and culture media	4
Proteome-wide analysis of protein alterations in response to aristolochic acids in rat kidney and liver tissues	4
Circular RNA profiles of osteoarthritic synovium	4
The complete change in bile acids and steroids in systematic metabolomics applied to the intrahepatic cholestasis of pregnancy	4
Th1, Th2 and Th17 inflammatory pathways synergistically predict cardiometabolic protein expression in serum of COVID-19 patients	4
A drug discovery approach based on comparative transcriptomics between two toxin-secreting marine annelids: Glycera alba and Hediste diversicolor	4
Multi-omics data integration approaches for precision oncology	4
KDM4B, a potential prognostic biomarker revealed by large-scale public databases and clinical samples in uterine corpus endometrial carcinoma	4
Time-dependent re-organization of biological processes by the analysis of the dynamic transcriptional response of yeast cells to doxorubicin	4