Molecular Omics

Article	Citations
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Advancing science through data sharing: a new data policy for Molecular Omics	23
Cancer evaluation in dogs using cerumen as a source for volatile biomarker prospection	21
Contents list	21
The relationship between bacterial outer membrane vesicles and halophilic adaptation	20
Proteomic analysis reveals mechanisms underlying increased efficacy of bleomycin by photochemical internalization in bladder cancer cells	20
Integration of focal adhesion morphogenesis and polarity by DOCK5 promotes YAP/TAZ-driven drug resistance in TNBC	20
The RNA cargo of Myxococcus outer membrane vesicles	19
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Discovery of candidate biomarkers from plasma-derived extracellular vesicles of patients with cirrhosis and hepatocellular carcinoma: an exploratory proteomic study	17
Metabolomics reveals the impact of the saturation of dietary lipids on the aging and longevity of C. elegans	17
Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1–CoREST interactome during embryonic stem cell differentiation	16
Temperature- and time-dependent degradation of mouse tissue proteins: insights into RNA-binding protein stability via mass spectrometry	16
Plasma metabolomic signatures from patients following high-dose total body irradiation	15
Correction: Analysis of N-glycosylation protein of Kashin–Beck disease chondrocytes derived from induced pluripotent stem cells based on label-free strategies with LC-MS/MS	14
Enhanced anti-inflammatory and anti-fibrotic effects of nanoparticles loaded with a combination of Aloe vera–Moringa oleifera extracts	14
Inside front cover	14
Revealing the dynamics of fungal disease with proteomics	14
Contents list	14
Transcriptome profiling of serum exosomes by RNA-Seq reveals lipid metabolic changes as a potential biomarker for evaluation of roxadustat treatment of chronic kidney diseases	13
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Unraveling the phenotypic and metabolic responses induced by urea-encapsulated hydrogel beads on Brassica juncea (L.) Czern & Coss	12
Understanding pulmonary hypertension: the need for an integrative metabolomics and transcriptomics approach	12
Front cover	11
Systematic characterization of m6A proteomics across 12 cancer types: a multi-omics integration study	11
Untargeted metabolomics analysis reveals spatial metabolic heterogeneity in different intestinal segments of type 1 diabetic mice	11
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Functional response of microbial communities in lab-controlled oil-contaminated marine sediment	10
Analysis of FAIMS for the study of affinity-purified protein complexes using the orbitrap ascend tribrid mass spectrometer	10
Complementarity of two proteomic data analysis tools in the identification of drug-metabolising enzymes and transporters in human liver	10
Antibiotic-induced gut microbiota dysbiosis altered host metabolism	10
Inside front cover	9
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The alteration of urinary metabolomics profiles in Kashin–Beck disease in a three consecutive year study	9
Unraveling the role of intra-cellular metabolites in the lactic acid production by novel Bacillus amyloliquefaciens using sugarcane molasses as a substratum	9
Lipid profile variability in children at different ages measured in dried blood spots	9
Sequencing, assembly, and genomic annotation of Leucoagaricus gongylophorus LEU18496, a dikarya mutualistic species	8
Front cover	8
Laser capture microdissection-capillary zone electrophoresis-tandem mass spectrometry (LCM-CZE-MS/MS) for spatially resolved top-down proteomics: a pilot study of zebrafish brain	8
Omics approaches to better understand the molecular mechanism of necroptosis and their translational implications	8
Serum metabolomics reveals the metabolic profile and potential biomarkers of ankylosing spondylitis	8
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Lnc-TMEM132D-AS1 as a potential therapeutic target for acquired resistance to osimertinib in non-small-cell lung cancer	8
Activation of KLF6 by titanate nanofibers and regulatory roles of KLF6 on ATF3 in the endothelial monolayer and mouse aortas	7
Systemic analysis of lipid metabolism from individuals to multi-organism systems	7
Front cover	7
Integrating N-glycan and CODEX imaging reveal cell-specific protein glycosylation in healthy human lung	7
Comprehensive expression profiles of mRNAs, lncRNAs and miRNAs in Kashin-Beck disease identified by RNA-sequencing	7
Single cell proteomics analysis of drug response shows its potential as a drug discovery platform	7
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Identification of prognostic factors in classic Hodgkin lymphoma by integrating whole slide imaging and next generation sequencing	7
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Proteomic changes associated with racial background and sepsis survival outcomes	7
Ethyl acetate extract of Caesalpinia sappan L. for the treatment of atherosclerosis in ApoE−/− mice and its mechanism	6
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Species-level identification of enterotype-specific microbial markers for colorectal cancer and adenoma	6
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Proteomics-based molecular and functional characteristic profiling of muscle tissue in Triploid crucian carp	6
Antimalarial mechanism of action of the natural product 9-methoxystrobilurin G	6
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Spatial proteomic alterations detected via MALDI-MS imaging implicate neuronal loss in a Huntington's disease mouse (YAC128) brain	6
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Label-free quantitation of the changes in salivary proteome associated with the chronic consumption of the betel nut (Areca catechu)	5
Human circulatory proteome interaction, oxidative stress-associated signalling and cardiovascular implications during titanium dioxide nanoparticle (TiO2-NP) exposure	5
Circular RNA profiles of osteoarthritic synovium	5

Anti-inflammatory effects of myristic acid mediated by the NF-κB pathway in lipopolysaccharide-induced BV-2 microglial cells	5
Sustained hypoxia but not intermittent hypoxia induces HIF-1α transcriptional response in human aortic endothelial cells	5
Proteomic and metabolomic dissection of the BRAF V600E mutation-induced cellular state transition in lung epithelial cells	5
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Computational approaches leveraging integrated connections of multi-omic data toward clinical applications	5
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Proteomic analysis reveals anticancer mechanisms of Bhallataka taila in inhibiting lung cancer progression and metastasis	5
Pre-illness data reveals differences in multiple metabolites and metabolic pathways in those who do and do not recover from infectious mononucleosis	5
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A comparative performance evaluation of imputation methods in spatially resolved transcriptomics data	5
Lipidomics in forensic science: a comprehensive review of applications in drugs, alcohol, latent fingermarks, fire debris, and seafood authentication	4
1H-NMR based metabolic study of MMTV-PyMT mice along with pathological progress to screen biomarkers for the early diagnosis of breast cancer	4
Multi-omics insights into the interplay between gut microbiota and colorectal cancer in the “microworld” age	4
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Chemical diversity of Brittonodoxa subpinnata, a Brazilian native species of moss	4
Lipidomics reveals cell specific changes during pluripotent differentiation to neural and mesodermal lineages	4
Front cover	4
Unmasking the lipid landscape: carbamazepine induces alterations in Leydig cell lipidome	4
Protein network analysis links the NSL complex to Parkinson’s disease via mitochondrial and nuclear biology	4
Butyrate promotes C2C12 myoblast proliferation by activating ERK/MAPK pathway	4
Intact cell lipidomics using the Bruker MBT lipid Xtract assay allows the rapid detection of glycosyl-inositol-phospho-ceramides from Aspergillus fumigatus	4
Comprehensive untargeted lipidomic profiling of third generation lentiviral vectors and packaging cells	4
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A multi-omics machine learning classifier for outgrowth of cow's milk allergy in children	4
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An adaptable in silico ensemble model of the arachidonic acid cascade	4
Long-term physical inactivity induces significant changes in biochemical pathways related to metabolism of proteins and glycerophospholipids in mice	3
Biochemical and metabolic signatures are fundamental to drought adaptation in PGPR Enterobacter bugandensis WRS7	3
Profiling protein targets of cellular toxicant exposure	3
Open-tubular trap columns: towards simple and robust liquid chromatography separations for single-cell proteomics	3
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Retraction: Tetracycline-controllable artificial microRNA-HOTAIR + EZH2 suppressed the progression of bladder cancer cells	3
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Distinct global metabolomic profiles of the model organismCaenorhabditis elegansduring interactions withStaphylococcus aureusandSalmonella entericaSerovar Typhi	3
Prediction of quality markers in Maren Runchang pill for constipation using machine learning and network pharmacology	3
Contents list	3
Nontargeted metabolomics reveals differences in the metabolite profiling among methicillin-resistant and methicillin-susceptible Staphylococcus aureus in response to antibiotics	3
Graphene oxide links alterations of anti-viral signaling pathways with lipid metabolism via suppressing TLR3 in vascular smooth muscle cells	3
Investigating the mechanism of Qifu Yin in ameliorating memory disorders through pseudo-targeted lipidomics	3
Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids	3
Integrative analysis of small non-coding RNAs predicts a piRNA/miRNA-CCND1/BRAF/HRH1/ATXN3 regulatory circuit that drives oncogenesis in glioblastoma	3
Role of identified proteins in the proteome profiles of CDK4/6 inhibitor-resistant breast cancer cell lines	3
Acute exercise dynamically modulates the hepatic mitochondrial proteome	3
Analysis of the transcriptome and metabolome of pancreatic spheroids derived from human induced pluripotent stem cells and matured in an organ-on-a-chip	3
Contents list	3
Investigation of cattle plasma proteome in response to pain and inflammation using next generation proteomics technique, SWATH-MS	3
Pancreatic cancer environment: from patient-derived models to single-cell omics	3
Food authentication: truffle species classification by non-targeted lipidomics analyses using mass spectrometry assisted by ion mobility separation	3
Multi-omic characterisation ofStreptomyces hygroscopicusNRRL 30439: detailed assessment of its secondary metabolic potential	3
Exon–intron boundary detection made easy by physicochemical properties of DNA	2
A comparative lipidomic study of the human placenta from women with or without gestational diabetes mellitus	2
Competing technologies: determining the geographical origin of strawberries (Fragaria × ananassa) using laboratory based near-infrared spectroscopy compared to a simple portable device	2
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Integrating host and microbiome biology using holo-omics	2
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Biomarkers of heart failure: advances in omics studies	2
Size exclusion chromatography based proteomic and degradomic profiling of inflammasome-activated, murine bone marrow-derived dendritic cells highlights complex retention and release of cleavage produc	2
Lamiophlomis rotata attenuates rheumatoid arthritis by regulating sphingolipid and steroid hormone metabolism	2
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Pre-analytical aspects in metabolomics of human biofluids – sample collection, handling, transport, and storage	2
LC-MS-based metabolomics reveals the in vivo effect of Shegan Mahuang Decoction in an OVA-induced rat model of airway hyperresponsiveness	2
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Cronobacter sakazakii infection implicates multifaceted neuro-immune regulatory pathways of Caenorhabditis elegans	2
Proteome- and metabolome-level changes during early stages of clubroot infection in Brassica napus canola	2
Contents list	2
Screening and identification of key microRNAs and regulatory pathways associated with the renal fibrosis process	2
Outstanding Reviewers for Molecular Omics in 2023	1
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A bright future for proteomics of health and disease. Introduction to the US HUPO 2021 themed issue – proteomics from single cell to systems biology in health and disease	1
Outstanding Reviewers for Molecular Omics in 2021	1
Selective labeling of tyrosine residues in proteins: insights from PTAD labeling and tandem mass spectrometry analysis	1
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TALKIEN: crossTALK IntEraction Network. A web-based tool for deciphering molecular communication through ligand–receptor interactions	1
Correction: Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin	1
KDM4B, a potential prognostic biomarker revealed by large-scale public databases and clinical samples in uterine corpus endometrial carcinoma	1
Focus on the molecular mechanisms of cisplatin resistance based on multi-omics approaches	1
Comprehensive comparison of sample preparation workflows for proteomics	1

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Multi-omic profiling of histone variant H3.3 lysine 27 methylation reveals a distinct role from canonical H3 in stem cell differentiation	1
Investigation of the motif activity of transcription regulators in pancreatic β-like cell subpopulations differentiated from human induced pluripotent stem cells	1
Advancements in automation for plasma proteomics sample preparation	1
A 9-gene biomarker panel identifies bacterial coinfections in culture-negative COVID-19 cases	1
Influence of sex, age, ethnicity/race, and body mass index on the cerumen volatilome using two data analysis approaches: binary and semiquantitative	1
Correction: Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids	1
Back cover	1
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GRL–PUL: predicting microbe–drug association based on graph representation learning and positive unlabeled learning	1
Advancing colorectal cancer research through lipidomics	1
Metabolomics approach to understand molecular mechanisms involved in fungal pathogen–citrus pathosystems	1
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A Q-marker screening strategy based on ADME studies and systems biology for Chinese herbal medicine, taking Qianghuo Shengshi decoction in treating rheumatoid arthritis as an example	1
Network modeling suggests HIV infection phenocopies PI3K-AKT pathway mutations to enhance HPV-associated cervical cancer	1
TarpiD, a database of putative and validated targets of piRNAs	1
IVS I-5 (G > C) is associated with changes to the RBC membrane lipidome in response to hydroxyurea treatment in β-thalassemia patients	1