Molecular Omics

Article	Citations
Front cover	33
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The relationship between bacterial outer membrane vesicles and halophilic adaptation	20
The RNA cargo of Myxococcus outer membrane vesicles	19
Contents list	18
Advancing science through data sharing: a new data policy for Molecular Omics	18
Proteomic analysis reveals mechanisms underlying increased efficacy of bleomycin by photochemical internalization in bladder cancer cells	16
Front cover	16
Cancer evaluation in dogs using cerumen as a source for volatile biomarker prospection	16
Back cover	15
Metabolomics reveals the impact of the saturation of dietary lipids on the aging and longevity of C. elegans	15
Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1–CoREST interactome during embryonic stem cell differentiation	15
Correction: Analysis of N-glycosylation protein of Kashin–Beck disease chondrocytes derived from induced pluripotent stem cells based on label-free strategies with LC-MS/MS	14
Plasma metabolomic signatures from patients following high-dose total body irradiation	14
Discovery of candidate biomarkers from plasma-derived extracellular vesicles of patients with cirrhosis and hepatocellular carcinoma: an exploratory proteomic study	14
Contents list	13
Contents list	13
Inside front cover	13
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Unraveling the phenotypic and metabolic responses induced by urea-encapsulated hydrogel beads on Brassica juncea (L.) Czern & Coss	11
Transcriptome profiling of serum exosomes by RNA-Seq reveals lipid metabolic changes as a potential biomarker for evaluation of roxadustat treatment of chronic kidney diseases	11
Enhanced anti-inflammatory and anti-fibrotic effects of nanoparticles loaded with a combination of Aloe vera–Moringa oleifera extracts	11
Revealing the dynamics of fungal disease with proteomics	11

Systematic characterization of m6A proteomics across 12 cancer types: a multi-omics integration study	10
Back cover	10
Understanding pulmonary hypertension: the need for an integrative metabolomics and transcriptomics approach	10
Unraveling the role of intra-cellular metabolites in the lactic acid production by novel Bacillus amyloliquefaciens using sugarcane molasses as a substratum	10
Front cover	10
Untargeted metabolomics analysis reveals spatial metabolic heterogeneity in different intestinal segments of type 1 diabetic mice	10
Complementarity of two proteomic data analysis tools in the identification of drug-metabolising enzymes and transporters in human liver	10
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Functional response of microbial communities in lab-controlled oil-contaminated marine sediment	9
The alteration of urinary metabolomics profiles in Kashin–Beck disease in a three consecutive year study	9
Antibiotic-induced gut microbiota dysbiosis altered host metabolism	9
Contents list	8
Laser capture microdissection-capillary zone electrophoresis-tandem mass spectrometry (LCM-CZE-MS/MS) for spatially resolved top-down proteomics: a pilot study of zebrafish brain	8
Comprehensive expression profiles of mRNAs, lncRNAs and miRNAs in Kashin-Beck disease identified by RNA-sequencing	8
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Lnc-TMEM132D-AS1 as a potential therapeutic target for acquired resistance to osimertinib in non-small-cell lung cancer	8
Sequencing, assembly, and genomic annotation of Leucoagaricus gongylophorus LEU18496, a dikarya mutualistic species	8
Inside front cover	8
Lipid profile variability in children at different ages measured in dried blood spots	8
Activation of KLF6 by titanate nanofibers and regulatory roles of KLF6 on ATF3 in the endothelial monolayer and mouse aortas	8
Front cover	7
Omics approaches to better understand the molecular mechanism of necroptosis and their translational implications	7
Single cell proteomics analysis of drug response shows its potential as a drug discovery platform	7
Identification of prognostic factors in classic Hodgkin lymphoma by integrating whole slide imaging and next generation sequencing	7
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Serum metabolomics reveals the metabolic profile and potential biomarkers of ankylosing spondylitis	7
Inside front cover	6
Species-level identification of enterotype-specific microbial markers for colorectal cancer and adenoma	6
Antimalarial mechanism of action of the natural product 9-methoxystrobilurin G	6
Proteomic changes associated with racial background and sepsis survival outcomes	6
Systemic analysis of lipid metabolism from individuals to multi-organism systems	6
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Proteomics-based molecular and functional characteristic profiling of muscle tissue in Triploid crucian carp	6
Label-free quantitation of the changes in salivary proteome associated with the chronic consumption of the betel nut (Areca catechu)	6
Front cover	6
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Ethyl acetate extract of Caesalpinia sappan L. for the treatment of atherosclerosis in ApoE−/− mice and its mechanism	6
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Front cover	5
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Human circulatory proteome interaction, oxidative stress-associated signalling and cardiovascular implications during titanium dioxide nanoparticle (TiO2-NP) exposure	5
Proteomic analysis reveals anticancer mechanisms of Bhallataka taila in inhibiting lung cancer progression and metastasis	5
Contents list	5
Spatial proteomic alterations detected via MALDI-MS imaging implicate neuronal loss in a Huntington's disease mouse (YAC128) brain	5
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Circular RNA profiles of osteoarthritic synovium	5
Front cover	5
Pre-illness data reveals differences in multiple metabolites and metabolic pathways in those who do and do not recover from infectious mononucleosis	5
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Proteomic and metabolomic dissection of the BRAF V600E mutation-induced cellular state transition in the lung epithelial cells	5

A comparative performance evaluation of imputation methods in spatially resolved transcriptomics data	4
Anti-inflammatory effects of myristic acid mediated by the NF-κB pathway in lipopolysaccharide-induced BV-2 microglial cells	4
Multi-omics insights into the interplay between gut microbiota and colorectal cancer in the “microworld” age	4
Lipidomics reveals cell specific changes during pluripotent differentiation to neural and mesodermal lineages	4
Computational approaches leveraging integrated connections of multi-omic data toward clinical applications	4
Contents list	4
Chemical diversity of Brittonodoxa subpinnata, a Brazilian native species of moss	4
Comprehensive untargeted lipidomic profiling of third generation lentiviral vectors and packaging cells	4
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Sustained hypoxia but not intermittent hypoxia induces HIF-1α transcriptional response in human aortic endothelial cells	4
Lipidomics in forensic science: a comprehensive review of applications in drugs, alcohol, latent fingermarks, fire debris, and seafood authentication	4
Intact cell lipidomics using the Bruker MBT lipid Xtract assay allows the rapid detection of glycosyl-inositol-phospho-ceramides from Aspergillus fumigatus	4
1H-NMR based metabolic study of MMTV-PyMT mice along with pathological progress to screen biomarkers for the early diagnosis of breast cancer	4
Open-tubular trap columns: towards simple and robust liquid chromatography separations for single-cell proteomics	3
Unmasking the lipid landscape: carbamazepine induces alterations in Leydig cell lipidome	3
Butyrate promotes C2C12 myoblast proliferation by activating ERK/MAPK pathway	3
Profiling protein targets of cellular toxicant exposure	3
Analysis of the transcriptome and metabolome of pancreatic spheroids derived from human induced pluripotent stem cells and matured in an organ-on-a-chip	3
Graphene oxide links alterations of anti-viral signaling pathways with lipid metabolism via suppressing TLR3 in vascular smooth muscle cells	3
Nontargeted metabolomics reveals differences in the metabolite profiling among methicillin-resistant and methicillin-susceptible Staphylococcus aureus in response to antibiotics	3
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Front cover	3
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An adaptable in silico ensemble model of the arachidonic acid cascade	3
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Acute exercise dynamically modulates the hepatic mitochondrial proteome	3
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Protein network analysis links the NSL complex to Parkinson’s disease via mitochondrial and nuclear biology	3
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Investigation of cattle plasma proteome in response to pain and inflammation using next generation proteomics technique, SWATH-MS	3
Biochemical and metabolic signatures are fundamental to drought adaptation in PGPR Enterobacter bugandensis WRS7	3
Role of identified proteins in the proteome profiles of CDK4/6 inhibitor-resistant breast cancer cell lines	2
Integrating host and microbiome biology using holo-omics	2
Biomarkers of heart failure: advances in omics studies	2
Exon–intron boundary detection made easy by physicochemical properties of DNA	2
Multi-omic characterisation ofStreptomyces hygroscopicusNRRL 30439: detailed assessment of its secondary metabolic potential	2
Long-term physical inactivity induces significant changes in biochemical pathways related to metabolism of proteins and glycerophospholipids in mice	2
Prediction of quality markers in Maren Runchang pill for constipation using machine learning and network pharmacology	2
Retraction: Tetracycline-controllable artificial microRNA-HOTAIR + EZH2 suppressed the progression of bladder cancer cells	2
Pre-analytical aspects in metabolomics of human biofluids – sample collection, handling, transport, and storage	2
Food authentication: truffle species classification by non-targeted lipidomics analyses using mass spectrometry assisted by ion mobility separation	2
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Distinct global metabolomic profiles of the model organismCaenorhabditis elegansduring interactions withStaphylococcus aureusandSalmonella entericaSerovar Typhi	2
Pancreatic cancer environment: from patient-derived models to single-cell omics	2
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Proteome- and metabolome-level changes during early stages of clubroot infection in Brassica napus canola	2
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LC-MS-based metabolomics reveals the in vivo effect of Shegan Mahuang Decoction in an OVA-induced rat model of airway hyperresponsiveness	2
Integrative analysis of small non-coding RNAs predicts a piRNA/miRNA-CCND1/BRAF/HRH1/ATXN3 regulatory circuit that drives oncogenesis in glioblastoma	2
Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids	2
Investigating the mechanism of Qifu Yin in ameliorating memory disorders through pseudo-targeted lipidomics	2
A comparative lipidomic study of the human placenta from women with or without gestational diabetes mellitus	1
Lamiophlomis rotata attenuates rheumatoid arthritis by regulating sphingolipid and steroid hormone metabolism	1
Screening and identification of key microRNAs and regulatory pathways associated with the renal fibrosis process	1
Influence of sex, age, ethnicity/race, and body mass index on the cerumen volatilome using two data analysis approaches: binary and semiquantitative	1
A Q-marker screening strategy based on ADME studies and systems biology for Chinese herbal medicine, taking Qianghuo Shengshi decoction in treating rheumatoid arthritis as an example	1
Front cover	1
Metabolomics approach to understand molecular mechanisms involved in fungal pathogen–citrus pathosystems	1
Correction: Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin	1
Back cover	1
GRL–PUL: predicting microbe–drug association based on graph representation learning and positive unlabeled learning	1
Cronobacter sakazakii infection implicates multifaceted neuro-immune regulatory pathways of Caenorhabditis elegans	1
Contents list	1
Size exclusion chromatography based proteomic and degradomic profiling of inflammasome-activated, murine bone marrow-derived dendritic cells highlights complex retention and release of cleavage produc	1
KDM4B, a potential prognostic biomarker revealed by large-scale public databases and clinical samples in uterine corpus endometrial carcinoma	1
A 9-gene biomarker panel identifies bacterial coinfections in culture-negative COVID-19 cases	1
Inside front cover	1
IVS I-5 (G > C) is associated with changes to the RBC membrane lipidome in response to hydroxyurea treatment in β-thalassemia patients	1
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A bright future for proteomics of health and disease. Introduction to the US HUPO 2021 themed issue – proteomics from single cell to systems biology in health and disease	1
Competing technologies: determining the geographical origin of strawberries (Fragaria × ananassa) using laboratory based near-infrared spectroscopy compared to a simple portable device	1
Focus on the molecular mechanisms of cisplatin resistance based on multi-omics approaches	1
Outstanding Reviewers for Molecular Omics in 2023	1
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Outstanding Reviewers for Molecular Omics in 2021	1
Correction: Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids	1
Network modeling suggests HIV infection phenocopies PI3K-AKT pathway mutations to enhance HPV-associated cervical cancer	1

Comprehensive comparison of sample preparation workflows for proteomics	1
Phosphoproteomics guides low dose drug combination of cisplatin and silmitasertib against concurrent chemoradiation resistant cervical cancer	0
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Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection	0
Analyses of pseudoexfoliation aqueous humor lipidome	0
Proteomic and metabolic profiling reveals molecular phenotype associated with chemotrophic growth of Rubrivivax benzoatilyticus JA2 on l-tryptophan	0
Mass spectrometry-based proteomics in neurodegenerative lysosomal storage disorders	0
Advances in stable isotope labeling: dynamic labeling for spatial and temporal proteomic analysis	0
Changes in lipid profile and SOX-2 expression in RM-1 cells after co-culture with preimplantation embryos or with deproteinated blastocyst extracts	0
Genome-scale metabolic models in translational medicine: the current status and potential of machine learning in improving the effectiveness of the models	0
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Systems-level analysis of transcriptome reorganization during liver regeneration	0
The plasma phospholipidome of the bottlenose dolphin (Tursiops truncatus) is modulated by both sex and developmental stage	0
The effect of krill oil on longevity and locomotion: a pilot study	0
Multi-omic analysis of host-microbial interactions central to the gut-brain axis	0
The landscape ofN6-methyladenosine modification patterns and altered transcript profiles in the cardiac-specific deletion of natriuretic peptide receptor A	0
RNA-seq-based transcriptome analysis of the anti-inflammatory effect of artesunate in the early treatment of the mouse cerebral malaria model	0
In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles	0
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The effect of key DNA methylation in different regions on gene expression in hepatocellular carcinoma	0
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YAP activation is robust to dilution	0
Metabolomic analysis reveals stress tolerance mechanisms in common bean (Phaseolus vulgaris L.) related to treatment with a biostimulant obtained from Corynebacterium glutamicum	0
Nuciferine attenuates acute ischemic stroke in a rat model: a metabolomic approach for the mechanistic study	0
An integrative chemometric approach and correlative metabolite networking of LC-MS and 1H NMR based urine metabolomics for radiation signatures	0
Serum proteomic analysis of differentially expressed proteins and pathways involved in the mechanism of endemic osteoarthritis	0
Biomarker identification by reversing the learning mechanism of an autoencoder and recursive feature elimination	0
Identification of autophagy-related signatures in nonalcoholic fatty liver disease and correlation with non-parenchymal cells of the liver	0
Early-stage responses toPlasmodiophora brassicaeat the transcriptome and metabolome levels in clubroot resistant and susceptible oilseedBrassica napus	0
Transcriptional profiling of the chick retina identifies down-regulation of VIP and UTS2B genes during early lens-induced myopia	0
Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin	0
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Macrophages secrete murinoglobulin-1 and galectin-3 to regulate neutrophil degranulation after myocardial infarction	0
Identification of potential biomarkers for diagnosis of syphilis from the cerebrospinal fluid based on untargeted metabolomic analysis	0
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The miR-4732-5p/XPR1 axis suppresses the invasion, metastasis, and epithelial–mesenchymal transition of lung adenocarcinoma via the PI3K/Akt/GSK3β/Snail pathway	0
The application of omics techniques to evaluate the effects of Tanshinone IIA on dextran sodium sulfate induced ulcerative colitis	0
Towards inferring absolute concentrations from relative abundance in time-course GC-MS metabolomics data	0
A blood-based multi-omic landscape for the molecular characterization of kidney stone disease	0
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Label-free serum proteomics for the identification of the putative biomarkers of postoperative pain in patients with gastric cancer	0
Critical assessment of genome-scale metabolic models of Arabidopsis thaliana	0
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Integrative analysis of cancer dependency data and comprehensive phosphoproteomics data revealed the EPHA2-PARD3 axis as a cancer vulnerability in KRAS-mutant colorectal cancer	0
Characterization of methionine dependence in melanoma cells	0
Production of mannosylerythritol lipids: biosynthesis, multi-omics approaches, and commercial exploitation	0
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Bacterial endosymbionts of a nitrogen-fixing yeast Rhodotorula mucilaginosa JGTA-S1 – insights into a yet unknown micro-ecosystem	0
Plasma extracellular vesicles microRNA-208b-3p and microRNA-143-3p as novel biomarkers for sudden cardiac death prediction in acute coronary syndrome	0
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Geographical origin traceability of rice using a FTIR-based metabolomics approach	0
KIF2C as a potential therapeutic target: insights from lung adenocarcinoma subtype classification and functional experiments	0
Differential modulation of the hepatocellular metabolome, cytoprotective and inflammatory responses due to endotoxemia and lipotoxicity	0
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Extraction and untargeted analysis of metabolome from undemineralised cortical bone matrix	0
The complete change in bile acids and steroids in systematic metabolomics applied to the intrahepatic cholestasis of pregnancy	0
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Implementation of multiomic mass spectrometry approaches for the evaluation of human health following environmental exposure	0
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Characterizing Metabolic Dysregulation in Early-Stage Chronic Kidney Disease for Diagnostic Insight	0
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Transcriptomic landscape of sodium butyrate-induced growth inhibition of human colorectal cancer organoids	0
Targeting coenzyme Q10 synthesis overcomes bortezomib resistance in multiple myeloma	0
Transcriptome and proteome analyses reveal the virulence of the Vibrio alginolyticus effector gene vopR	0
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Contributors to our Emerging Investigators issue	0
Defining atherosclerotic plaque biology by mass spectrometry-based omics approaches	0
Cross-talk and integrative post-translational modifications	0
Differential roles of transcriptional and translational negative autoregulations in protein dynamics	0
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Untargeted metabolomics and phenotype data indicate the therapeutic and prophylactic potential of Lysimachia candida Lindl. towards high-fat high-fructose-induced metabolic syndrome in rats	0
Integrated proteomic and metabolomic analysis of plasma reveals regulatory pathways and key elements in thyroid cancer	0
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What transcriptomics and proteomics can tell us about a high borate perturbed boron tolerant Bacilli strain	0
Omics technologies for high-throughput-screening of cell–biomaterial interactions	0
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Integrating OMICS-based platforms and analytical tools for diagnosis and management of pancreatic cancer: a review	0
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Proteomic and metabolomic profiling of acute and chronic stress events associated with military exercises	0
Lipopolysaccharide and statin-mediated immune-responsive protein networks revealed in macrophages through affinity purification spacer-arm controlled cross-linking (AP-SPACC) proteomics	0
piRNAs in the human retina and retinal pigment epithelium reveal a potential role in intracellular trafficking and oxidative stress	0
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Untargeted metabolomics reveals altered branch chain amino acids, glucose and fat metabolism contributing to coronary artery disease among Indian diabetic patients	0
Metabolic responses in the cortex and hippocampus induced by Il-15rα mutation	0
MobiChIP: a compatible library construction method of single-cell ChIP-seq based droplets	0
Th1, Th2 and Th17 inflammatory pathways synergistically predict cardiometabolic protein expression in serum of COVID-19 patients	0