OOIR: Observatory of International Research

Papers

(The median citation count of Phytobiomes Journal is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Nitrogen Fertilization Reduces Nitrogen Fixation Activity of Diverse Diazotrophs in Switchgrass Roots	36
Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System	35
Distinguishing Between the Impacts of Heat and Drought Stress on the Root Microbiome of Sorghum bicolor	33
Soybean Microbiome Recovery After Disruption is Modulated by the Seed and Not the Soil Microbiome	31
Environment has a Stronger Effect than Host Plant Genotype in Shaping Spring Brassica napus Seed Microbiomes	30
The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution	30
Seasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf Bacteria	29
Endophytic Microbiome Variation Among Single Plant Seeds	28
The Impact of Stand Age and Fertilization on the Soil Microbiome of Miscanthus × giganteus	24
Sorghum Root Flavonoid Chemistry, Cultivar, and Frost Stress Effects on Rhizosphere Bacteria and Fungi	23
The Citrus Microbiome: From Structure and Function to Microbiome Engineering and Beyond	22
Soil Microbial Diversity Impacts Plant Microbiota More than Herbivory	21
Inoculation of Stigma-Colonizing Microbes to Apple Stigmas Alters Microbiome Structure and Reduces the Occurrence of Fire Blight Disease	21
Experimental Evidence Pointing to Rain as a Reservoir of Tomato Phyllosphere Microbiota	21
Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar	20
Intraspecific Variability in Root Traits and Edaphic Conditions Influence Soil Microbiomes Across 12 Switchgrass Cultivars	18
Comparative Analysis of the Rhizosphere and Endophytic Microbiomes across Apple Rootstock Genotypes in Replant Orchard Soils	18
Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome	17
Plant and Soil Drivers of Whole-Plant Microbiomes: Variation in Switchgrass Fungi from Coastal to Mountain Sites	17
The Foliar Microbiome Suggests that Fungal and Bacterial Agents May be Involved in the Beech Leaf Disease Pathosystem	16
Molecular Barcoding Reveals the Genus Streptomyces as Associated Root Endophytes of Apple (Malus domestica) Plants Grown in Soils Affected by Apple Replant Disease	15
Nitrogen Fixation and Resorption Efficiency Differences Among Twelve Upland and Lowland Switchgrass Cultivars	14
A New Oomycete Metabarcoding Method Using the rps10 Gene	14
Bacterial Microbiomes Associated with the Rhizosphere, Root Interior, and Aboveground Plant Organs of Wheat and Canola at Different Growth Stages	14
Influence of Plant Host and Organ, Management Strategy, and Spore Traits on Microbiome Composition	14

Biotic and Abiotic Stress Factors Induce Microbiome Shifts and Enrichment of Distinct Beneficial Bacteria in Tomato Roots	14
Predators of Soil Bacteria in Plant and Human Health	13
The Leaf Bacterial Microbiota of Female and Male Kiwifruit Plants in Distinct Seasons: Assessing the Impact ofPseudomonas syringaepv.actinidiae	12
High-Throughput Metabarcoding Characterizes Fungal Endophyte Diversity in the Phyllosphere of a Barley Crop	12
Mycobiome Transplant Increases Resistance toAustropuccinia psidiiin an Endangered Hawaiian Plant	11
Switchgrass Rhizosphere Metabolite Chemistry Driven by Nitrogen Availability	10
A Characterization of a Cool-Climate Organic Vineyard’s Microbiome	10
Plant Age Influences Microbiome Communities More Than Plant Compartment in Greenhouse-Grown Creeping Bentgrass	10
Rethinking the Roles of Pathogens and Mutualists: Exploring the Continuum of Symbiosis in the Context of Microbial Ecology and Evolution	10
The Influence of Host Genotypes on the Endophytes in the Leaf Scar Tissues of Apple Trees and Correlation of the Endophytes with Apple Canker (Neonectria ditissima) Development	9
A Call for Research: A Resource of Core Microbial Symbionts of the Arabidopsis thaliana Microbiome Ready and Awaiting Experimental Exploration	8
A Metabarcoding Approach to Investigate Fungal and Oomycete Communities Associated with Kiwifruit Vine Decline Syndrome in Italy	8
From Roots to Leaves: The Capacity of Micromonospora to Colonize Different Legume Tissues	8
Biological Evidence and Molecular Modeling of a Grapevine Pinot gris Virus Outbreak in a Vineyard	8
Identification of Bacterial Populations and Functional Mechanisms Potentially Involved in Biochar-Facilitated Antagonism of the Soilborne PathogenFusarium oxysporum	8
Managing Plant Microbiomes for Sustainable Biofuel Production	8
Comparison of the Species Communities ofPhytophthora, Pythium, andPhytopythiumAssociated with Soybean Genotypes in High Disease Environments in Ohio	8
N-Cycling Microbiome Recruitment Differences Between Modern and Wild Zea mays	8
Rhizosphere Microbes Influence Host Circadian Clock Function	7
Passaging Phyllosphere Microbial Communities Develop Suppression Towards Bacterial Speck Disease in Tomato	7
Apple Blossoms from a Swiss Orchard with Low-Input Plant Protection Regime Reveal High Abundance of Potential Fire Blight Antagonists	7
Chronic Drought Differentially Alters the Belowground Microbiome of Drought-Tolerant and Drought-Susceptible Genotypes of Populus trichocarpa	7
Digging into the Lettuce Cold-Specific Root Microbiome in Search of Chilling Stress Tolerance-Conferring Plant-Growth-Promoting Bacteria	7
Comparing DNA Extraction and 16S rRNA Gene Amplification Methods for Plant-Associated Bacterial Communities	7
Vertical Stratification of Microbial Communities in Woody Plants	7
RNA Viral Communities Are Structured by Host Plant Phylogeny in Oak and Conifer Leaves	6
Drought Shifts Sorghum Root Metabolite and Microbiome Profiles and Enriches for Pipecolic Acid	6
Microbiome Network Connectivity and Composition Linked to Disease Resistance in Strawberry Plants	6
Genome Sequence Source of Bacillus amyloliquefaciens Strain GD4a, a Bacterial Endophyte Associated with Switchgrass Plants	6
Soil Metatranscriptomics: An Improved RNA Extraction Method Toward Functional Analysis Using Nanopore Direct RNA Sequencing	6
Metagenomic Analysis Reveals Reduced Beneficial Microorganism Associations in Roots of Foot-Rot-Affected Citrus Trees	6
Evaluation of Different Phyllosphere Sample Types for Parallel Metabarcoding of Fungi and Oomycetes in Vitis vinifera	6
The Effect ofSeptoria glycinesand Fungicide Application on the Soybean Phyllosphere Mycobiome	6
The Single-Seed Microbiota Reveals Rare Taxa-Associated Community Robustness	6
Phyllosphere Exudates Select for Distinct Microbiome Members in Sorghum Epicuticular Wax and Aerial Root Mucilage	6
Climatic Clustering and Longitudinal Analysis with Impacts on Food, Bioenergy, and Pandemics	5
The Blueberry Fruit Mycobiome Varies by Tissue Type and Fungicide Treatment	5
Drought Tolerance Traits in Neotropical Trees Correlate with the Composition of Phyllosphere Fungal Communities	5
Transmission Mode and Assembly of Seed Fungal Endophyte Communities in Wheat and Wheat Wild Relatives	5
Disease-Induced Assemblage of the Rhizosphere Fungal Community in Successive Plantings of Wheat	5
Interactive Effects of Soybean Cyst Nematode, Arbuscular-Mycorrhizal Fungi, and Soil pH on Chlorophyll Content and Plant Growth of Soybean	5
CRISPR/Cas9-Mediated Mutagenesis of Carotenoid Cleavage Dioxygenase (CCD) Genes in Sorghum Alters Strigolactone Biosynthesis and Plant Biotic Interactions	5
The Effect of Incubation Temperature on the Species Composition ofPhytophthora,Phytopythium, andPythiumCommunities Associated with Soybean	5
Fungal Symbionts Generate Water-Saver and Water-Spender Plant Drought Strategies via Diverse Effects on Host Gene Expression	4
Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal PathogenZymoseptoria tritici	4
Genomics- and Machine Learning-Accelerated Discovery of Biocontrol Bacteria	4
Unravelling the Bacterial Community Composition of Valerianella locusta, A Cold-Tolerant Plant	4
Contrasting Nitrogen Fertilization andBrassica napus(Canola) Variety Development Impact Recruitment of the Root-Associated Microbiome	4
Characterizing Variation in the Bacterial and Fungal Tare Soil Microbiome of Seed Potato	4
Comparative Genomic Understanding of Gram-Positive Plant Growth-Promoting Leifsonia	4

Synthetic Communities Increase Microbial Diversity and Productivity of Agave tequilana Plants in the Field	4
Resilient Soils for Resilient Farms: An Integrative Approach to Assess, Promote, and Value Soil Health for Small- and Medium-Size Farms	3
Tare Soil Alters the Composition of the Developing Potato Rhizosphere Microbiome	3
Deep-Rooted Plant Species Recruit Distinct Bacterial Communities in the Subsoil	3
Leaf Endophyte Community Composition and Network Structures Differ Between Tolerant and Susceptible English Boxwood	3
Winter Rye Cover Cropping Changes Squash (Cucurbita pepo) Phyllosphere Microbiota and Reduces Pseudomonas syringae Symptoms	3
Predictive Ecology and Management of Phyllosphere Microbial Communities Through Cross-Scale Synthesis	3
Characterization of Foliar Fungal Endophyte Communities from White Pine Blister Rust Resistant and Susceptible Pinus flexilis in Natural Stands in the Southern Rocky Mountains	3
Frontiers and Opportunities in Bioenergy Crop Microbiome Research Networks	3
Dominance of Ciliophora and Chlorophyta Among Phyllosphere Protists of Solanaceous Plants	3
Composition of the Microbiomes from Spinach Seeds Infested or Noninfested with Peronospora effusa or Verticillium dahliae	2
The Decay and Fungal Succession of Apples with Bitter Rot Across a Vegetation Diversity Gradient	2
Forest and Plantation Soil Microbiomes Differ in Their Capacity to Suppress Feedback Between Geosmithia morbida and Rhizosphere Pathogens of Juglans nigra Seedlings	2
Sequence Resource of Bacterial Communities Associated with Hemp in Ohio	2
Fungal Metabarcoding Data for Two Grapevine Varieties (Regent and Vitis vinifera ‘Cabernet-Sauvignon’) Inoculated with Powdery Mildew (Erysiphe necator) Under Drought Conditions	2
Phyllosphere 2022: 11th International Symposium on Leaf Surface Microbiology	2
Phyllosphere, Front and Center: Focus on a Formerly ‘Ecologically Neglected’ Microbial Milieu	2
Geographic Location, Management Strategy, and Huanglongbing Disease Affect Arbuscular Mycorrhizal Fungal Communities Across U.S. Citrus Orchards	2
Biocontrol Impacts on Wheat Physiology and Fusarium Head Blight Outcomes Are Bacterial Endophyte Strain and Cultivar Specific	2
A Streptomyces Consortium Contributes Distinct Microbial Interactions During Arabidopsis thaliana Microbiome Assembly	2
Fungicide-Mediated Shifts in the Foliar Fungal Community of an Invasive Grass	2
Establishment of Biocontrol Agents and Their Impact on Rhizosphere Microbiome and Induced Grapevine Defenses Are Highly Soil-Dependent	2
Getting to the Root of Tree Soil Microbiome Sampling	1
The Tomato’s Tale: Exploring taxonomy, biogeography, domestication and microbiome for enhanced resilience	1
Endophyte-Mediated Populus trichocarpa Water Use Efficiency Is Dependent on Time of Day and Plant Water Status	1
Impacts of Host Genotype and Grafting on Root, Rhizosphere, and Core Microbiomes in Theobroma cacao Seedlings	1
Maize Kernel-Associated Metagenomes Reveal Potential Microbe–Microbe Interactions that Underlie Fusarium Ear Rot Disease	1
Changes in Fungal and Oomycete Community Composition Following Irrigation Reductions Aimed at Increasing Water Use Efficiency in a Containerized Nursery Crop	1
Irrigation Water Source Matters: Saline Groundwater Irrigation Lowers Date Palm Root-Associated Fungal Richness and Alters Their Community Structural Patterns	1
Rapid Multilocus Adaptation of Clonal Cabbage Leaf Curl Virus Populations toArabidopsis thaliana	1
Incorporating Culture-Independent Methods to Identify Net Syndrome-Associated Fusarium Species in Peanuts	1
Potato Soil Core Microbiomes Are Regionally Variable Across the Continental United States	1
A Bit of Poetry About Plant Pathology	1
The Root Endophytic Microbiome Shifts Under Drought in High-Performing Sorghum	1
Characterization of Fungal Communities Associated with the Lenticel-Like Damage of ‘Hass’ Avocados in Two Geographical Locations in Colombia	1
Endemism and Reemergence Potential of the Ipomovirus Sweet Potato Mild Mottle Virus (FamilyPotyviridae) in Eastern Africa: Half a Century of Mystery	1
Rapid Restructuring of Rhizosphere and Endospheric Fungal Communities with Drought in Multiple Lines of Domesticated Sunflower	1
NemaTaxa: A New Taxonomic Database for Analysis of Nematode Community Data	1
Changes in Bacterial Communities and Functions Associated with Litter Degradation During Forest Succession Caused by Forest Disease	1
Changing Dynamics in the Spread and Management of Banana Xanthomonas Wilt Disease in Uganda Over Two Decades	1
Glyphosate Residues in Soil and Phosphate Fertilizer Affect Foliar Endophytic Microbial Community Composition and Phytohormone Levels in Potato	1
Seed Imbibition and Metabolism Contribute Differentially to Initial Assembly of the Soybean Holobiont	1
Subtle Responses of Soil Bacterial Communities to Corn-Soybean-Wheat Rotation	1
Abiotic Stress Reorganizes Rhizosphere and Endosphere Network Structure of Sorghum bicolor	1
Exploring Microbial Dysbiosis in Orchards Affected by Little Cherry Disease	1
Suppression of Phytophthora on Chamaecyparis in Sustainable Horticultural Substrates Depends on Fertilization and Is Linked to the Rhizobiome	1
Exploring the Role of Fungal Endophytes in the Sudden Death Syndrome of the Invasive Shrub Chrysanthemoides monilifera subsp. rotundata in Australia	1
Amplicon Sequencing ofFusariumTranslation Elongation Factor 1α Reveals that Soil Communities ofFusariumSpecies Are Resilient to Disturbances Caused by Crop and Tillage Practices	1
Host Genetic Traits Underlying the Composition and Assembly of the Citrus Microbiome	1
Linnemannia elongata: A Key Species in Chitin-Based Plant Growth Promotion	1
Seasonal Fluctuations in Plant-Parasitic Nematode Vertical Distributions and Their Interactions with Edaphic Factors in Vegetable Fields of South Georgia, U.S.A.	1
Comparison of Nodule Endophyte Composition, Diversity, and Gene Content Between Medicago truncatula Genotypes	1
Assembly of Endophytic Communities of Setaria viridis Plants when Grown in Different Soils and Derived from Different Seeds	1
Rhizosphere and Root Community Analysis of Oomycetes Associated with Poor Alfalfa (Medicago sativa) Seedling Establishment	1