OOIR: Observatory of International Research

Papers

(The median citation count of Phytobiomes Journal is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Nitrogen Fertilization Reduces Nitrogen Fixation Activity of Diverse Diazotrophs in Switchgrass Roots	33
Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System	31
The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution	28
Distinguishing Between the Impacts of Heat and Drought Stress on the Root Microbiome of Sorghum bicolor	26
Environment has a Stronger Effect than Host Plant Genotype in Shaping Spring Brassica napus Seed Microbiomes	26
Seasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf Bacteria	25
Endophytic Microbiome Variation Among Single Plant Seeds	24
Soybean Microbiome Recovery After Disruption is Modulated by the Seed and Not the Soil Microbiome	23
The Impact of Stand Age and Fertilization on the Soil Microbiome of Miscanthus × giganteus	22
Sorghum Root Flavonoid Chemistry, Cultivar, and Frost Stress Effects on Rhizosphere Bacteria and Fungi	22
Inoculation of Stigma-Colonizing Microbes to Apple Stigmas Alters Microbiome Structure and Reduces the Occurrence of Fire Blight Disease	18
Intraspecific Variability in Root Traits and Edaphic Conditions Influence Soil Microbiomes Across 12 Switchgrass Cultivars	17
Experimental Evidence Pointing to Rain as a Reservoir of Tomato Phyllosphere Microbiota	17
Plant and Soil Drivers of Whole-Plant Microbiomes: Variation in Switchgrass Fungi from Coastal to Mountain Sites	16
Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar	16
The Citrus Microbiome: From Structure and Function to Microbiome Engineering and Beyond	15
Molecular Barcoding Reveals the Genus Streptomyces as Associated Root Endophytes of Apple (Malus domestica) Plants Grown in Soils Affected by Apple Replant Disease	15
Comparative Analysis of the Rhizosphere and Endophytic Microbiomes across Apple Rootstock Genotypes in Replant Orchard Soils	15
Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome	15
Soil Microbial Diversity Impacts Plant Microbiota More than Herbivory	15
Influence of Plant Host and Organ, Management Strategy, and Spore Traits on Microbiome Composition	13
The Foliar Microbiome Suggests that Fungal and Bacterial Agents May be Involved in the Beech Leaf Disease Pathosystem	12
Nitrogen Fixation and Resorption Efficiency Differences Among Twelve Upland and Lowland Switchgrass Cultivars	12
High-Throughput Metabarcoding Characterizes Fungal Endophyte Diversity in the Phyllosphere of a Barley Crop	11
Bacterial Microbiomes Associated with the Rhizosphere, Root Interior, and Aboveground Plant Organs of Wheat and Canola at Different Growth Stages	11

A New Oomycete Metabarcoding Method Using the rps10 Gene	11
The Leaf Bacterial Microbiota of Female and Male Kiwifruit Plants in Distinct Seasons: Assessing the Impact ofPseudomonas syringaepv.actinidiae	10
Mycobiome Transplant Increases Resistance toAustropuccinia psidiiin an Endangered Hawaiian Plant	10
Switchgrass Rhizosphere Metabolite Chemistry Driven by Nitrogen Availability	9
Managing Plant Microbiomes for Sustainable Biofuel Production	8
Apple Blossoms from a Swiss Orchard with Low-Input Plant Protection Regime Reveal High Abundance of Potential Fire Blight Antagonists	7
From Roots to Leaves: The Capacity of Micromonospora to Colonize Different Legume Tissues	7
Biotic and Abiotic Stress Factors Induce Microbiome Shifts and Enrichment of Distinct Beneficial Bacteria in Tomato Roots	7
A Call for Research: A Resource of Core Microbial Symbionts of the Arabidopsis thaliana Microbiome Ready and Awaiting Experimental Exploration	7
Predators of Soil Bacteria in Plant and Human Health	7
Plant Age Influences Microbiome Communities More Than Plant Compartment in Greenhouse-Grown Creeping Bentgrass	6
The Influence of Host Genotypes on the Endophytes in the Leaf Scar Tissues of Apple Trees and Correlation of the Endophytes with Apple Canker (Neonectria ditissima) Development	6
Vertical Stratification of Microbial Communities in Woody Plants	6
Comparison of the Species Communities ofPhytophthora, Pythium, andPhytopythiumAssociated with Soybean Genotypes in High Disease Environments in Ohio	6
Rhizosphere Microbes Influence Host Circadian Clock Function	6
Climatic Clustering and Longitudinal Analysis with Impacts on Food, Bioenergy, and Pandemics	5
Rethinking the Roles of Pathogens and Mutualists: Exploring the Continuum of Symbiosis in the Context of Microbial Ecology and Evolution	5
N-Cycling Microbiome Recruitment Differences Between Modern and Wild Zea mays	5
Genome Sequence Source of Bacillus amyloliquefaciens Strain GD4a, a Bacterial Endophyte Associated with Switchgrass Plants	5
Biological Evidence and Molecular Modeling of a Grapevine Pinot gris Virus Outbreak in a Vineyard	5
Phyllosphere Exudates Select for Distinct Microbiome Members in Sorghum Epicuticular Wax and Aerial Root Mucilage	5
Evaluation of Different Phyllosphere Sample Types for Parallel Metabarcoding of Fungi and Oomycetes in Vitis vinifera	5
Comparing DNA Extraction and 16S rRNA Gene Amplification Methods for Plant-Associated Bacterial Communities	5
A Characterization of a Cool-Climate Organic Vineyard’s Microbiome	5
Identification of Bacterial Populations and Functional Mechanisms Potentially Involved in Biochar-Facilitated Antagonism of the Soilborne PathogenFusarium oxysporum	5
The Single-Seed Microbiota Reveals Rare Taxa-Associated Community Robustness	4
Microbiome Network Connectivity and Composition Linked to Disease Resistance in Strawberry Plants	4
Drought Tolerance Traits in Neotropical Trees Correlate with the Composition of Phyllosphere Fungal Communities	4
Metagenomic Analysis Reveals Reduced Beneficial Microorganism Associations in Roots of Foot-Rot-Affected Citrus Trees	4
Chronic Drought Differentially Alters the Belowground Microbiome of Drought-Tolerant and Drought-Susceptible Genotypes of Populus trichocarpa	4
Interactive Effects of Soybean Cyst Nematode, Arbuscular-Mycorrhizal Fungi, and Soil pH on Chlorophyll Content and Plant Growth of Soybean	4
Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal Pathogen Zymoseptoria tritici	4
The Effect of Incubation Temperature on the Species Composition ofPhytophthora,Phytopythium, andPythiumCommunities Associated with Soybean	4
Transmission Mode and Assembly of Seed Fungal Endophyte Communities in Wheat and Wheat Wild Relatives	3
Passaging Phyllosphere Microbial Communities Develop Suppression Towards Bacterial Speck Disease in Tomato	3
The Effect ofSeptoria glycinesand Fungicide Application on the Soybean Phyllosphere Mycobiome	3
A Metabarcoding Approach to Investigate Fungal and Oomycete Communities Associated with Kiwifruit Vine Decline Syndrome in Italy	3
Genomics- and Machine Learning-Accelerated Discovery of Biocontrol Bacteria	3
Fungal Symbionts Generate Water-Saver and Water-Spender Plant Drought Strategies via Diverse Effects on Host Gene Expression	3
Dominance of Ciliophora and Chlorophyta Among Phyllosphere Protists of Solanaceous Plants	3
Geographic Location, Management Strategy, and Huanglongbing Disease Affect Arbuscular Mycorrhizal Fungal Communities Across U.S. Citrus Orchards	2
Fungal Metabarcoding Data for Two Grapevine Varieties (Regent and Vitis vinifera ‘Cabernet-Sauvignon’) Inoculated with Powdery Mildew (Erysiphe necator) Under Drought Conditions	2
Characterizing Variation in the Bacterial and Fungal Tare Soil Microbiome of Seed Potato	2
Characterization of Foliar Fungal Endophyte Communities from White Pine Blister Rust Resistant and Susceptible Pinus flexilis in Natural Stands in the Southern Rocky Mountains	2
Phyllosphere 2022: 11th International Symposium on Leaf Surface Microbiology	2
Unravelling the Bacterial Community Composition of Valerianella locusta, A Cold-Tolerant Plant	2
Contrasting Nitrogen Fertilization and Brassica napus (Canola) Variety Development Impact Recruitment of the Root-Associated Microbiome	2
Disease-Induced Assemblage of the Rhizosphere Fungal Community in Successive Plantings of Wheat	2
RNA Viral Communities Are Structured by Host Plant Phylogeny in Oak and Conifer Leaves	2
Leaf Endophyte Community Composition and Network Structures Differ Between Tolerant and Susceptible English Boxwood	2

The Blueberry Fruit Mycobiome Varies by Tissue Type and Fungicide Treatment	2
Comparative Genomic Understanding of Gram-Positive Plant Growth-Promoting Leifsonia	2
Winter Rye Cover Cropping Changes Squash (Cucurbita pepo) Phyllosphere Microbiota and Reduces Pseudomonas syringae Symptoms	2
Predictive Ecology and Management of Phyllosphere Microbial Communities Through Cross-Scale Synthesis	2
Resilient Soils for Resilient Farms: An Integrative Approach to Assess, Promote, and Value Soil Health for Small- and Medium-Size Farms	2
Digging into the Lettuce Cold-Specific Root Microbiome in Search of Chilling Stress Tolerance-Conferring Plant-Growth-Promoting Bacteria	2
Tare Soil Alters the Composition of the Developing Potato Rhizosphere Microbiome	2
Fungicide-Mediated Shifts in the Foliar Fungal Community of an Invasive Grass	2
Sequence Resource of Bacterial Communities Associated with Hemp in Ohio	1
Drought Shifts Sorghum Root Metabolite and Microbiome Profiles and Enriches for Pipecolic Acid	1
Changes in Bacterial Communities and Functions Associated with Litter Degradation During Forest Succession Caused by Forest Disease	1
Potato soil core microbiomes are regionally variable across the continental US	1
Rhizosphere and Root Community Analysis of Oomycetes Associated with Poor Alfalfa (Medicago sativa) Seedling Establishment	1
Exploring Microbial Dysbiosis in Orchards Affected by Little Cherry Disease	1
Characterization of Fungal Communities Associated with the Lenticel-Like Damage of ‘Hass’ Avocados in Two Geographical Locations in Colombia	1
Non-native plant viruses prevalent in remnant natural plant communities harm native perennial hosts	1
Changing Dynamics in the Spread and Management of Banana Xanthomonas Wilt Disease in Uganda Over Two Decades	1
Amplicon Sequencing ofFusariumTranslation Elongation Factor 1α Reveals that Soil Communities ofFusariumSpecies Are Resilient to Disturbances Caused by Crop and Tillage Practices	1
Rapid Multilocus Adaptation of Clonal Cabbage Leaf Curl Virus Populations to Arabidopsis thaliana	1
Changes in Fungal and Oomycete Community Composition Following Irrigation Reductions Aimed at Increasing Water Use Efficiency in a Containerized Nursery Crop	1
Subtle Responses of Soil Bacterial Communities to Corn-Soybean-Wheat Rotation	1
A Bit of Poetry About Plant Pathology	1
CRISPR/Cas9-Mediated Mutagenesis of Carotenoid Cleavage Dioxygenase (CCD) Genes in Sorghum Alters Strigolactone Biosynthesis and Plant Biotic Interactions	1
Suppression of Phytophthora on Chamaecyparis in Sustainable Horticultural Substrates Depends on Fertilization and Is Linked to the Rhizobiome	1
Rapid restructuring of rhizosphere and endospheric fungal communities with drought in multiple lines of domesticated sunflower	1
The Decay and Fungal Succession of Apples with Bitter Rot Across a Vegetation Diversity Gradient	1
NemaTaxa: A New Taxonomic Database for Analysis of Nematode Community Data	1
Comparison of Nodule Endophyte Composition, Diversity, and Gene Content Between Medicago truncatula Genotypes	1
Biocontrol agents establishment and their impact on rhizosphere microbiome and induced grapevine defenses is highly soil-dependent	1
Soil Metatranscriptomics: An Improved RNA Extraction Method Toward Functional Analysis Using Nanopore Direct RNA Sequencing	1
Phyllosphere, Front and Center: Focus on a Formerly ‘Ecologically Neglected’ Microbial Milieu	1
Frontiers and Opportunities in Bioenergy Crop Microbiome Research Networks	1
Forest and Plantation Soil Microbiomes Differ in Their Capacity to Suppress Feedback Between Geosmithia morbida and Rhizosphere Pathogens of Juglans nigra Seedlings	1