OOIR: Observatory of International Research

Papers

(The median citation count of Phytobiomes Journal is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Foliar Fungicide Application Alters the Culturable Foliar Fungal Endophyte Community in Corn	29
A Plant Health View on Endohyphal Bacteria and Their Fungal Hosts	23
Exploring the Hemp Virome and Assessing Hemp Germplasm for Resistance to an Emerging Pathogen	22
From Roots to Leaves: The Capacity of Micromonospora to Colonize Different Legume Tissues	21
Drought Tolerance Traits in Neotropical Trees Correlate with the Composition of Phyllosphere Fungal Communities	18
Wood Microbiome Variation and Interactions with Fungal Symbionts of Invasive Ambrosia Beetles	16
N-Cycling Microbiome Recruitment Differences Between Modern and Wild Zea mays	14
Amplicon Sequencing ofFusariumTranslation Elongation Factor 1α Reveals that Soil Communities ofFusariumSpecies Are Resilient to Disturbances Caused by Crop and Tillage Practices	14
Host Identity Determines the Bacterial and Fungal Community and Network Structures in the Phyllosphere of Plant Species in a Temperate Steppe	13
Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal PathogenZymoseptoria tritici	13
Comparative Analysis of Two Neighboring Conducive and Suppressive Soils Toward Plant Parasitism Caused by Phelipanche ramosa on Brassica napus	13
Full Issue PDF	11
A Streptomyces Consortium Contributes Distinct Microbial Interactions During Arabidopsis thaliana Microbiome Assembly	11
Rapid Restructuring of Rhizosphere and Endospheric Fungal Communities with Drought in Multiple Lines of Domesticated Sunflower	11
Effective Seed Sterilization Methods Require Optimization Across Maize Genotypes	10
Suppression of Phytophthora on Chamaecyparis in Sustainable Horticultural Substrates Depends on Fertilization and Is Linked to the Rhizobiome	10
Frontiers and Opportunities in Bioenergy Crop Microbiome Research Networks	10
Phyllosphere 2022: 11th International Symposium on Leaf Surface Microbiology	10
The Root Endophytic Microbiome Shifts Under Drought in High-Performing Sorghum	10
Exploring Microbial Dysbiosis in Orchards Affected by Little Cherry Disease	10
Legacy Effects of Cover Crop on Cash Crop Rhizosphere Microbiota in a No-Till Maize-Soybean Cropping System	10
CRISPR/Cas9-Mediated Mutagenesis of Carotenoid Cleavage Dioxygenase (CCD) Genes in Sorghum Alters Strigolactone Biosynthesis and Plant Biotic Interactions	10
Hemp Microbiome Composition and Function Under Developing Pest Management Solutions	9
Drought Influences the Structure, Diversity, and Functionality of the Fungal Community Inhabiting the Grapevine Xylem and Enhances the Abundance of Phaeomoniella chlamydospora	9
The Effect ofSeptoria glycinesand Fungicide Application on the Soybean Phyllosphere Mycobiome	8

Subtle Responses of Soil Bacterial Communities to Corn-Soybean-Wheat Rotation	8
Unraveling Bacterial Adaptation Strategies in the Microbiome Shaped by the Chemical Environment of the Plant Rhizosphere	8
Fungal Communities Shift with Soybean Cyst Nematode Abundance in Soils	7
Changing Dynamics in the Spread and Management of Banana Xanthomonas Wilt Disease in Uganda Over Two Decades	7
Leaf Endophyte Community Composition and Network Structures Differ Between Tolerant and Susceptible English Boxwood	7
The Phytovirome	6
Persistence and Microbiome Modification in Rhizoctonia solani-Inoculated Rhizosphere Following Amendment with a Bacillus Biocontrol Agent	6
Nursery origin and propagation stage influence the endophytic fungal communities inhabiting grapevine planting stocks	6
A Pangenomic Analysis of the Diversity and Biological Functioning of the Genus Azotobacter	6
Deep-Rooted Plant Species Recruit Distinct Bacterial Communities in the Subsoil	6
Composition and Assembly of the Endophytic Fungal Community of Alpine Rhododendron Hosts Along Elevation Gradients	6
Viruses of Nitrogen-Fixing Mesorhizobium Bacteria in Globally Distributed Chickpea Root Nodules	5
The Genetic Architecture of Arabidopsis thaliana in Response to Native Non-Pathogenic Bacterial Species Revealed by Genome-Wide Association Mapping in Field Conditions	5
Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome	5
Establishment of Biocontrol Agents and Their Impact on Rhizosphere Microbiome and Induced Grapevine Defenses Are Highly Soil-Dependent	5
Effects of Plant Health-Protecting Product Applications on the Root-Associated Microbiota of Apple Saplings and Strawberries	5
Microbial Community Analysis Offers Insight into the Complex Origins of Plant Disease in a Smallholder Farm Context	4
Searching the Pinus taeda Foliar Mycobiome for Emerging Pathogens Among Brown-Spot Needle Blight and Needlecast Outbreaks in the Southeast United States	4
Phyllospheric bacterial communities in spinach are influenced by soil nitrogen availability	4
Exploring the Effects of Trichoderma virens Biofungicide on Carrot Cavity Spot and Soil Fungal Community Dynamics	4
Fungicide-Mediated Shifts in the Foliar Fungal Community of an Invasive Grass	4
Impact of Growing Conditions and Potato Cultivars on the Diversity of Endophytic Microbial Communities	4
Dominance of Ciliophora and Chlorophyta Among Phyllosphere Protists of Solanaceous Plants	4
Rethinking the Roles of Pathogens and Mutualists: Exploring the Continuum of Symbiosis in the Context of Microbial Ecology and Evolution	3
The Tomato's Tale: Exploring Taxonomy, Biogeography, Domestication, and Microbiome for Enhanced Resilience	3
The Single-Seed Microbiota Reveals Rare Taxa-Associated Community Robustness	3
A Characterization of a Cool-Climate Organic Vineyard’s Microbiome	3
Exploring Diverse Approaches to Iterative Microbiome Passaging in Soil and Plant Systems	3
Rapid Multilocus Adaptation of Clonal Cabbage Leaf Curl Virus Populations toArabidopsis thaliana	3
Digging into the Lettuce Cold-Specific Root Microbiome in Search of Chilling Stress Tolerance-Conferring Plant-Growth-Promoting Bacteria	3
Newly Isolated Trichoderma spp. Show Multifaceted Biocontrol Strategies to Inhibit Potato Late Blight Causal Agent Phytophthora infestans both In Vitro and In Planta	3
Tare Soil Alters the Composition of the Developing Potato Rhizosphere Microbiome	3
Rhizosphere and Root Community Analysis of Oomycetes Associated with Poor Alfalfa (Medicago sativa) Seedling Establishment	3
Genetically Similar Xanthomonas arboricola pv. pruni Strains and Associated Phages Display Phenotypic and Genotypic Variation Across 35 Years	3
Plant-Guided Microbiome Selection Produces Transient Effects on Insect Performance and Rhizosphere Community Assembly	2
Changes in Bacterial Communities and Functions Associated with Litter Degradation During Forest Succession Caused by Forest Disease	2
Drought Shifts Sorghum Root Metabolite and Microbiome Profiles and Enriches for Pipecolic Acid	2
Host- and Fusarium-Adapted Bacterial Consortia Alter Microbial Community Structures in Arabidopsis Roots and Suppress Fusarium oxysporum	2
A New Oomycete Metabarcoding Method Using the rps10 Gene	2
Phyllosphere, Front and Center: Focus on a Formerly ‘Ecologically Neglected’ Microbial Milieu	2
Potato Soil Core Microbiomes Are Regionally Variable Across the Continental United States	2
Contrasting Nitrogen Fertilization andBrassica napus(Canola) Variety Development Impact Recruitment of the Root-Associated Microbiome	2
Continuous Monoculture Alters the Fungal Community and Accumulates Potential Pathogenic Strains in the Rhizosphere of Codonopsis pilosula	2
Analyses of Fungal Communities from Culture-Dependent and -Independent Studies Reveal Novel Mycobiomes Associated with Globodera and Heterodera Species	2
Abiotic Stress Reorganizes Rhizosphere and Endosphere Network Structure of Sorghum bicolor	2
Establishment and Effect of a Protist Consortium on the Maize Rhizosphere	2
Forest and Plantation Soil Microbiomes Differ in Their Capacity to Suppress Feedback Between Geosmithia morbida and Rhizosphere Pathogens of Juglans nigra Seedlings	2
The Influence of Host Genotypes on the Endophytes in the Leaf Scar Tissues of Apple Trees and Correlation of the Endophytes with Apple Canker (Neonectria ditissima) Development	2
Full Issue PDF	2
Winter Rye Cover Cropping Changes Squash (Cucurbita pepo) Phyllosphere Microbiota and Reduces Pseudomonas syringae Symptoms	2

RNA Viral Communities Are Structured by Host Plant Phylogeny in Oak and Conifer Leaves	2
Apple Genotypes and Soil Properties Shape the Soil Microbiome and Influence the Plant Response to Replant Disease-Affected Soil	2
Biotic and Abiotic Stress Factors Induce Microbiome Shifts and Enrichment of Distinct Beneficial Bacteria in Tomato Roots	2
Endemism and Reemergence Potential of the Ipomovirus Sweet Potato Mild Mottle Virus (FamilyPotyviridae) in Eastern Africa: Half a Century of Mystery	2
Full Issue PDF	2
Full Issue PDF	2
The Bacterial and Viral Communities Associated with Onion Bacterial Bulb Rot	1
Hereditary Leaf Symbiosis in Tropical Plants: Evolution and Function of Vertically-Transmitted Bacterial Symbionts	1
Mycobiome Analysis of Tall Fescue Grass Under Drought Stress Using the Illumina MiSeq and Oxford Nanopore Technology MinION	1
Seasonal Fluctuations in Plant-Parasitic Nematode Vertical Distributions and Their Interactions with Edaphic Factors in Vegetable Fields of South Georgia, U.S.A.	1
Endophyte-Mediated Populus trichocarpa Water Use Efficiency Is Dependent on Time of Day and Plant Water Status	1
Ecological Connectivity of Plant Communities for Red Blotch Disease Dynamics Revealed by the Dietary Profiles and Landscape-Level Movement of Spissistilus festinus	1
Diversity of Bacillaceae on Rice Grown in Acid Sulfate Soils in Vietnam: Taxonomy, Specialized Metabolites, and Inhibitory Effects on Fungal Pathogens	1
Identification of Bacterial Populations and Functional Mechanisms Potentially Involved in Biochar-Facilitated Antagonism of the Soilborne PathogenFusarium oxysporum	1
The Decay and Fungal Succession of Apples with Bitter Rot Across a Vegetation Diversity Gradient	1
A Specific Resistance Gene to Leptosphaeria maculans, Rlm11, Has a Limited Impact on Brassica napus Mycobiota Compared with Plant Compartment or Cropping Season Effects	1
Phyllosphere Bacterial Communities in Wheat and Faba Bean Intercropping: Structural and Functional Mechanisms in Response to Stripe Rust Infection	1
Passaging Phyllosphere Microbial Communities Develop Suppression Towards Bacterial Speck Disease in Tomato	1
RNA-Sequencing-Based Virome Discovery in Florida Citrus Pests	1
Full Issue PDF	1
Incorporating Culture-Independent Methods to Identify Net Syndrome-Associated Fusarium Species in Peanuts	1
Influence of Epichloë on the Microbiota of Established Lolium perenne Pastures in Aotearoa, New Zealand	1
Genome Sequence Source of Bacillus amyloliquefaciens Strain GD4a, a Bacterial Endophyte Associated with Switchgrass Plants	1
Tall Fescue and Endophyte Genetics Influence Vertical Transmission and Seed Characteristics Under Climate Change Scenarios	1
Climatic Clustering and Longitudinal Analysis with Impacts on Food, Bioenergy, and Pandemics	1
Exploring the Role of Fungal Endophytes in the Sudden Death Syndrome of the Invasive Shrub Chrysanthemoides monilifera subsp. rotundata in Australia	1
Characterization of Foliar Fungal Endophyte Communities from White Pine Blister Rust Resistant and Susceptible Pinus flexilis in Natural Stands in the Southern Rocky Mountains	1
Full Issue PDF	1
Assembly of Endophytic Communities of Setaria viridis Plants when Grown in Different Soils and Derived from Different Seeds	1
Predictive Ecology and Management of Phyllosphere Microbial Communities Through Cross-Scale Synthesis	1
Old Foe, New Host: Epidemiology, Genetic Diversity, and Pathogenic Characterization of Maize Streak Virus in Rice Fields from Burkina Faso	1
Grove-Level Analysis of the Titer and Prevalence of ‘Candidatus Liberibacter asiaticus’ and Wolbachia in Diaphorina citri, Vector of Citrus Huanglongbing	1
Soil Type and Associated Microbiome Influence Chitin's Growth Promotion Effect in Lettuce	1
Changes in Fungal and Oomycete Community Composition Following Irrigation Reductions Aimed at Increasing Water Use Efficiency in a Containerized Nursery Crop	1
Phage-Dependent Alteration of Rhizosphere Microbiota in Tomato Plants	1
Coupled Phylogenetic and Functional Enrichment in the Tomato Rhizosphere Microbiome	1
Impact of Inoculation Practices on Microbiota Assembly and Community Stability in a Fabricated Ecosystem	1
Composition of the Microbiomes from Spinach Seeds Infested or Noninfested with Peronospora effusa or Verticillium dahliae	1
Full Issue PDF	1
Acknowledgment of Reviewers, 2024	1
Glyphosate Residues in Soil and Phosphate Fertilizer Affect Foliar Endophytic Microbial Community Composition and Phytohormone Levels in Potato	1
Microbiome Network Connectivity and Composition Linked to Disease Resistance in Strawberry Plants	1