OOIR: Observatory of International Research

Papers

(The TQCC of Synthetic and Systems Biotechnology is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
The biological principles and advanced applications of DSB repair in CRISPR-mediated yeast genome editing	75
Nobachelins, new siderophores from Nocardiopsis baichengensis protecting Caenorhabditis elegans from Pseudomonas aeruginosa infection	70
A hybrid RNA-protein biosensor for high-throughput screening of adenosylcobalamin biosynthesis	62
Promoting the production of challenging proteins via induced expression in CHO cells and modified cell-free lysates harboring T7 RNA polymerase and mutant eIF2α	56
Parallel screening and cheminformatics modeling of flavonoid activated aptasensors	54
Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets	46
Evaluation and optimization of analytical procedure and sample preparation for polar Streptomyces albus J1074 metabolome profiling	44
Quorum sensing inhibition of hordenine analogs on Pseudomonas aeruginosa and Serratia marcescens	43
Biotechnological and food synthetic biology potential of platform strain: Bacillus licheniformis	40
Automated characterization and analysis of expression compatibility between regulatory sequences and metabolic genes in Escherichia coli	37
Degradation strategies of pesticide residue: From chemicals to synthetic biology	37
Research progress of pathway and genome evolution in microbes	37
Single and multiplexed gene repression in solventogenic Clostridium via Cas12a-based CRISPR interference	36
Thank you Reviewers	35
Microbial production of cis,cis-muconic acid from aromatic compounds in engineered Pseudomonas	33
Cost-effective hybrid long-short read assembly delineates alternative GC-rich Streptomyces hosts for natural product discovery	31
Achieving robust synthetic tolerance in industrial E. coli through negative auto-regulation of a DsrA-Hfq module	31
DIProT: A deep learning based interactive toolkit for efficient and effective Protein design	31
Design and construction of microbial cell factories based on systems biology	30
Association between the nasopharyngeal microbiome and metabolome in patients with COVID-19	29
Efficient production of 2′-fucosyllactose in unconventional yeast Yarrowia lipolytica	29
Systemically functional characterization of regiospecific flavonoid O-methyltransferases from Glycine max	27
Surface display of carbonic anhydrase on Escherichia coli for CO2 capture and mineralization	27
Enhanced depolluting capabilities of microbial bioelectrochemical systems by synthetic biology	26
Cofactor manipulation to drive biosynthesis of natural products	26

Design and thermodynamic analysis of a pathway enabling anaerobic production of poly-3-hydroxybutyrate in Escherichia coli	25
WITHDRAWN: Recent Advances in the Microbial Synthesis of Human Hemoglobin	25
CgVeA, a light signaling responsive regulator, is involved in regulation of chaetoglobosin A biosynthesis and conidia development in Chaetomium globosum	24
Synergetic engineering of Escherichia coli for efficient production of l-tyrosine	23
Assessing the physiological properties of baker's yeast based on single-cell Raman spectrum technology	23
Engineering Komagataella phaffii to biosynthesize cordycepin from methanol which drives global metabolic alterations at the transcription level	23
Engineering Yarrowia lipolytica to produce nutritional fatty acids: Current status and future perspectives	22
Explore the dominant factor in prime editing via a view of DNA processing	22
Engineering caveolin-mediated endocytosis in Saccharomyces cerevisiae	21
Identification of crucial roles of transcription factor IhfA on high production of free fatty acids in Escherichia coli	21
Characterization of putative mannoprotein in Kluyveromyces lactis for lactase production	21
Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway	21
Polygalacturonase-inhibiting proteins as an exogenously applied natural solution for prevention of postharvest fungal infections	21
Analysis of the relationship between bile duct and duodenal microbiota reveals that potential dysbacteriosis is the main cause of primary common bile duct stones	20
Advances and perspectives in genetic expression and operation for the oleaginous yeast Yarrowia lipolytica	19
Synthetic biotechnology for C1 bio-refinery	19
Engineering and characterization of dehalogenase enzymes from Delftia acidovorans in bioremediation of perfluorinated compounds	19
Systematic metabolic engineering of Yarrowia lipolytica for efficient production of phytohormone abscisic acid	18
Efficient genome editing in Claviceps purpurea using a CRISPR/Cas9 ribonucleoprotein method	18
CRISPR/Cpf1–FOKI-induced gene editing in Gluconobacter oxydans	17
Plant metabolism and synthetic biology	17
Integrating PCR-free amplification and synergistic sensing for ultrasensitive and rapid CRISPR/Cas12a-based SARS-CoV-2 antigen detection	17
Way to efficient microbial paclitaxel mass production	17
Glycosyltransferases: Mining, engineering and applications in biosynthesis of glycosylated plant natural products	17
Increasing prediction performance of colorectal cancer disease status using random forests classification based on metagenomic shotgun sequencing data	16
Putative functions of EpsK in teichuronic acid synthesis and phosphate starvation in Bacillus licheniformis	16
Metabolic engineering of Bacillus amyloliquefaciens for efficient production of α-glucosidase inhibitor1-deoxynojirimycin	16
Investigation of carbonyl amidation and O-methylation during biosynthesis of the pharmacophore pyridyl of antitumor piericidins	16
Improved l-phenylglycine synthesis by introducing an engineered cofactor self-sufficient system	16
Development of multi-epitope mRNA vaccine against Clostridioides difficile using reverse vaccinology and immunoinformatics approaches	15
One stone two birds: Biosynthesis of 3-hydroxypropionic acid from CO2 and syngas-derived acetic acid in Escherichia coli	15
Protein-protein interface analysis of the non-ribosomal peptide synthetase peptidyl carrier protein and enzymatic domains	15
Transcriptome analysis reveals methanol metabolism variations for the growth damage caused by overexpression of chimeric transactivators in Pichia pastoris	15
Improvement of betanin biosynthesis in Saccharomyces cerevisiae by metabolic engineering	15
Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritima	15
Aptamer-based cell-free detection system to detect target protein	14
Biochemical synthesis of taxanes from mevalonate	14
Applications of protein engineering in the microbial synthesis of plant triterpenoids	14
Engineering Rubisco to enhance CO2 utilization	14
Designing a multi-epitope vaccine against Peptostreptococcus anaerobius based on an immunoinformatics approach	14
A CRISPR/Cas9-based visual toolkit enabling multiplex integration at specific genomic loci in Aspergillus niger	14
PCPD: Plant cytochrome P450 database and web-based tools for structural construction and ligand docking	14
A systematic discussion and comparison of the construction methods of synthetic microbial community	14
CRISPR/Cas12a-based genome editing for cyanophage of Anabeana sp.	14
EMT transcription factors activated circuits: A novel tool to study EMT dynamics and its therapeutic implications	13
O-glycosyltransferases from Homo sapiens contributes to the biosynthesis of Glycyrrhetic Acid 3-O-mono-β-D-glucuronide and Glycyrrhizin in Saccharomyces cerevisiae	13
CO2-elevated cell-free protein synthesis	13
Directed evolution of the fusion enzyme for improving astaxanthin biosynthesis in Saccharomyces cerevisiae	13
Genus-specific secondary metabolome in Allokutzneria and Kibdelosporangium	13
Conversion of acetate and glyoxylate to fumarate by a cell-free synthetic enzymatic biosystem	13

Synthetic biology techniques to tackle heavy metal pollution and poisoning	13
Engineering the thermostability of d-lyxose isomerase from Caldanaerobius polysaccharolyticus via multiple computer-aided rational design for efficient synthesis of d-mannose	12
Laccase is a multitasking protein for synthetic gene circuits in the yeast Saccharomyces cerevisiae	12
Integrated pathway engineering and transcriptome analysis for improved astaxanthin biosynthesis in Yarrowia lipolytica	12
Harnessing microbial heterogeneity for improved biosynthesis fueled by synthetic biology	11
A statistical approach to enhance the productivity of Streptomyces baarensis MH-133 for bioactive compounds	11
Development of synthetic biology tools to engineer Pichia pastoris as a chassis for the production of natural products	11
Mechanistic insights into the orthogonal functionality of an AHL-mediated quorum-sensing circuit in Yersinia pseudotuberculosis	11
Transcriptome-wide analysis of PIP reductase gene family identified a phenylpropene synthase crucial for the biosynthesis of dibenzocyclooctadiene lignans in Schisandra chinensis	11
Probing the growth and mechanical properties of Bacillus subtilis biofilms through genetic mutation strategies	11
Single carbon metabolism – A new paradigm for microbial bioprocesses?	11
Simulating androgen receptor selection in designer yeast	10
Multi-strategy engineering unusual sugar TDP-l-mycarose biosynthesis to improve the production of 3-O-α-mycarosylerythronolide B in Escherichia coli	10
Engineered microbes: Making valuable chemicals from waste gases	10
ECMpy 2.0: A Python package for automated construction and analysis of enzyme-constrained models	10
Advances in the biosynthesis of tetraacetyl phytosphingosine, a key substrate of ceramides	9
Coordinated regulation of two LacI family regulators, GvmR and GvmR2, on guvermectin production in Streptomyces caniferus	9
A novel CRISPR/Cas9 system with high genomic editing efficiency and recyclable auxotrophic selective marker for multiple-step metabolic rewriting in Pichia pastoris	9
Identification of neutral genome integration sites with high expression and high integration efficiency in Fusarium venenatum TB01	9
A flexible, modular and versatile functional part assembly toolkit for gene cluster engineering in Streptomyces	9
Microbial synthesis of bacitracin: Recent progress, challenges, and prospects	9
Biotransformation of ethylene glycol by engineered Escherichia coli	9
New dual functional CYP450 gene involves in isoflavone biosynthesis in Glycine max L.	9
Development of a green Komagataella phaffii cell factory for sustainable production of plant-derived sesquiterpene (–)-α-bisabolol	9
A combined strategy for the overproduction of complex ergot alkaloid agroclavine	9