mSystems

Article	Citations
Announcing the mSystems special collection on microbial dormancy	117
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	105
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	90
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	84
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	79
Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics	73
Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	73
STENSL: Microbial Source Tracking with ENvironment SeLection	71
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	68
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	67
Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	65
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	60
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	58
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	58
Variations in the oral microbiome and metabolome of methamphetamine users	57
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	57
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	53
Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	53
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	49
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	49
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	48
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	48
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	47
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	47
Dispersal shapes compositional and functional diversity in aquatic microbial communities	47

A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	45
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	45
An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	43
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	43
Gut microbiota contribute to high-altitude adaptation in tree sparrows	42
Regulatory networks of FUR and NtcA are intertwined by transcriptional regulators, two-component systems, serine/threonine kinases, and sigma factors in Anabaena	42
Disturbance–diversity relationships of microbial communities change based on growth substrate	42
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	42
Reduced glutathione levels in Enterococcus faecalis trigger metabolic and transcriptional compensatory adjustments during iron exposure	41
Metagenomic polymorphic toxin effector and immunity profiling predicts microbiome development and disease-related dysbiosis	41
A multi-omics analysis unveils functional and regulatory links between hydroxybenzene and aromatic amino acid metabolism in Candida albicans	41
Unraveling the disease pyramid: the role of environmental micro-eukaryotes in amphibian resistance to the deadly fungal pathogen Batrachochytrium dendrobatidis	40
Abrogation of SOS mutagenesis by the E. coli OxyR oxidative stress response	40
Navigating complexity: key considerations for studying fungal-bacterial interactions	40
Unraveling proteomic chaos by independent component analysis—ClpX proficiency promotes the iron and oxygen limitation responses of Staphylococcus aureus	39
A systems-level insight into PHB-driven metabolic adaptation orchestrated by the PHB-binding transcriptional regulator AniA (PhaR)	37
The chicken gut virome: spatial structuring and extensive diversity of 19,778 viral populations	37
Metabolomic profiling of Burkholderia thailandensis infection of airway epithelial cells provides insights into potential therapeutic targets	37
Higher abundance of Faecalibacterium prausnitzii in the gut microbiome is associated with a lower risk of sepsis development among 6,372 individuals foll	36
EMS mutation and SNP detection in intracellular Wolbachia genomes	36
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community	36
Deciphering global patterns of marine microbial community assembly and network stability	36
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research	35
Correction for Boysen et al., “Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”	35
Association of body index with fecal microbiome in children cohorts with ethnic–geographic factor interaction: accurately using a Bayesian zero-inflated negative binomial regression model	35
Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants	35
Cyberlindnera jadinii and Kluyveromyces lactis , two fungi used in food processes, have potential probiotic effects on gut inflammation	35
The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1	35
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae	35
A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance	34
Microbiota-derived indole acetic acid extends lifespan through the AhR-Sirt2 pathway in Drosophila	34
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China	33
Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222	33
Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations	33
Interactive Analysis of Functional Residues in Protein Families	33
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover	33
Mutation in the two-component regulator BaeSR mediates cefiderocol resistance and enhances virulence in Acinetobacter baumannii	33
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology	32
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	32
Exploring the complex interplay between oral Fusobacterium nucleatum infection, periodontitis, and robust microRNA induction, including multiple known on	32
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	32
Human fecal microbiota transplantation attenuates high dietary oxalate-induced renal calcium oxalate crystal depositions in rats via repairing Allobaculum-	32
Influence of heterotrophs on phage infection of marine picocyanobacteria	32
Two solutions for efficient light-harvesting in phototrophic Gemmatimonadota	32
Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature	32
CRISPRi screening reveals E. coli ’s anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR	32
Machine learning and causal inference applied to the gut metagenome-metabolome axis reveals a link between neonatal jaundice and autism spectrum disorder	31
Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecie	31
Integrative multi-omics analysis reveals gut-skin axis mechanisms and novel therapeutic target GALE in atopic dermatitis	31
Metagenomic analysis of fecal microbiomes reveals genetic potential for diverse hydrogen management strategies in marsupials	31

Gut-kidney axis modulation by viable and inactivated Akkermansia muciniphila mitigates avian hyperuricemia through microbial-metabolic crosstalk	30
A data-driven approach for timescale decomposition of biochemical reaction networks	30
Characterizing alterations in the gut microbiota following postpartum weight change	30
Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas	30
Short-chain fatty acid-producing microbes differentiate non-infectious and infectious neutropenic fever in leukemia	30
Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions	30
Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities	30
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2	29
Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children	29
Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia	29
Characterization and Spatial Mapping of the Human Gut Metasecretome	29
N 2 Fixation in Trichodesmium Does Not Require Spatial Segregation from Photosynthesis	29
Microbial sensor variation across biogeochemical conditions in the terrestrial deep subsurface	29
Involvement of Flagellin in Kin Recognition between Bacillus velezensis Strains	28
Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on the Cecal Microbiota of Laying Hens	28
Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome	28
Providing insight into the mechanism of action of cationic lipidated oligomers using metabolomics	28
Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution”	28
Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish	28
Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts	28
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota	27
More than two components: complexities in bacterial phosphosignaling	27
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions	27
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities	27
Bacillus coagulans restores pathogen-induced intestinal dysfunction via acetate–FFAR2–NF-κB–MLCK–MLC axis in Apostichopus japonicus	27
Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study	27
Migration and standing variation in vaginal and rectal yeast populations in recurrent vulvovaginal candidiasis	27
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4 , tet (X4), and	27
Distinct properties of human pathogenic Candida species revealed by systematic comparative phenotypic screening of clinical isolates	27
Community-associated quinolone-resistant and extended-spectrum beta-lactamase-producing Escherichia coli isolates are similar to clinical infection isola	27
Catabolism of acetosyringone and co-metabolic transformation of 2,4,6-trichlorophenol by a novel FAD-dependent monooxygenase	26
Phylo-Spec: a phylogeny-fusion deep learning model advances microbiome status identification	26
Multi-strain analysis of Pseudomonas putida reveals the metabolic and genetic diversity of the species	26
Metagenomic, metabolomic, and sensorial characteristics of fermented Coffea arabica L. var. Castillo beans inoculated with microbial starter cultures	26
Expanding vaginal microbiome pangenomes via a custom MIDAS database reveals Lactobacillus crispatus accessory genes associated with cervical dysplasia	26
From ecology to evolution: plasmid- and colicin-mediated persistence of antibiotic-resistant Escherichia coli in gulls	26
Machine learning-based evaluation of risk factors for carbapenem-resistant Klebsiella pneumoniae dissemination in n	26
Empowering global disease surveillance with CURED: a tool for rapid identification of unique genomic biomarkers	26
Bacterial taxonomic and functional changes following oral lyophilized donor fecal microbiota transplantation in patients with ulcerative colitis	26
Differences in salivary microbiome among children with tonsillar hypertrophy and/or adenoid hypertrophy	25
Assessment of genome evolution in Bifidobacterium adolescentis indicates genetic adaptation to the human gut	25
Note on the Difference between the Principal Balance Analysis with NearestBalance and Constrained Methods	25
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia	25
eIF6 deficiency regulates gut microbiota, decreases systemic inflammation, and alleviates atherosclerosis	25
Regionalization and Shaping Factors for Microbiomes and Core Resistomes in Atmospheric Particulate Matters	25
Metabolic biochemical models of N 2 fixation for sulfide oxidizers, methanogens, and methanotrophs	25
Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity	25
Identification of a Specific Biomarker of Acinetobacter baumannii Global Clone 1 by Machine Learning and PCR Related to Metabolic Fitness of ESKAPE Pathogens	25
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism	25
Dynamics of the Gut Microbiome in Shigella -Infected Children during the First Two Years of Life	25
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings	25
Estimating the size of fields in biomedical sciences	25
2024 Acknowledgment of mSystems Ad Hoc Reviewers	25
Repurposing of the antimalarial agent tafenoquine to combat MRSA	25
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus	24
Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers	24
Bile acid-gut microbiota imbalance in cholestasis and its long-term effect in mice	24
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli	24
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium	24
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease	24
Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism	24
Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success	23
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica	23
Adaptive attenuation of virulence in hypervirulent carbapenem-resistant Klebsiella pneumoniae	23
Sharing of Antimicrobial Resistance Genes between Humans and Food Animals	23
AcaFinder: Genome Mining for Anti-CRISPR-Associated Genes	23
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits	23
Model-informed development of bacteriophage therapy: bridging in vitro and in vivo efficacy against multid	23
Temporal Dynamics of Rare and Abundant Soil Bacterial Taxa from Different Fertilization Regimes Under Various Environmental Disturbances	23
Microbial life-history strategies and genomic traits between pristine and cropland soils	23
Disproportionation of Inorganic Sulfur Compounds by Mesophilic ChemolithoautotrophicCampylobacterota	23
Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow	23
Lab Launches—New Leaders, New Discoveries	23
Global m6A RNA and whole 5mC DNA methylation specifically contribute to cell replicative and premature senescence induced by extrinsic oxidative stress	22
Exploring bet-hedging in Salmonella enterica serovar Typhimurium with a dual reporter strain	22
Systematic evaluation of phenotypic variations induced by prophages in a clinical isolate of Pseudomonas aeruginosa	22
Elucidation of population-based bacterial adaptation to antimicrobial treatment by single-cell sequencing analysis of the gut microbiome of a hospital patient	22
Lactiplantibacillus plantarum 082 ameliorates heat stress-induced testicular injury by modulating the gut microbiota	22
Dry versus wet dormancy: suspended lives of Bacillus subtilis versus Saccharomyces cerevisiae spores	22
Group A streptococcal PerR coordinates iron and zinc homeostasis through Dpr, aiding in bacterial fitness during endothelial cell infection	22

The respiratory microbiome in pulmonary tuberculosis: a meta-analysis reveals niche-specific microbial and functional signatures	22
Detection and characterization of protein methylation in bacteriophages and their host, Cellulophaga baltica , during infection	22
Dissecting two contrasting phytoplankton-symbiont interaction modes based on population dynamics and gene expression patterns	22
Identification of a crucial INO2 allele for enhancing ethanol resistance in an industrial fermentation strain of Saccharomyces cer	22
Soil microbiome interventions for carbon sequestration and climate mitigation	21
Growth hormone combined with estrogen improves intrauterine adhesion fibrosis by downregulating endometrial microbial citraconic acid to target β-catenin protein	21
Taurine attenuates Listeria monocytogenes -induced inflammation and pyroptosis in mouse model by regulating MAPK and NLRP3/caspase-1/GSDMD pathways	21
A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities	21
Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles	21
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	21
Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples	21
Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake	21
A bacterial sensor taxonomy across earth ecosystems for machine learning applications	21
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems	21
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica	21
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity	21
Soil properties and plant functional traits have different importance in shaping rhizosphere soil bacterial and fungal communities in a meadow steppe	21
Cell behaviors underlying Myxococcus xanthus aggregate dispersal	21
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions	21
Localization and symbiotic status of probiotics in the coral holobiont	21
Unveiling the role of phages in shaping the periodontal microbial ecosystem	21
Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997–2020	21
Augmenting bacterial similarity measures using a graph-based genome representation	21
Predicting the Next Superspreader	21
Sodium butyrate inhibits colorectal cancer development by reducing M2 macrophage polarization and PD-L1 expression	21
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics	21
Allium mongolicum Regel flavonoids promote intestinal health in goats by regulating bile acid metabolism and gut microbiota	21
Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation	21
Antibacterial effect of phage cocktails and phage-antibiotic synergy against pathogenic Klebsiella pneumoniae	21
The resistomes of rural and urban pigs and poultry in Ghana	21
The heterogenous and diverse population of prophages in Mycobacterium genomes	21
Reply to Austin and Korem, “Compositional transformations can reasonably introduce phenotype-associated values into sparse features”	21
Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study	21
Screening of exogenous nutrients for pathogenic bacteria and development of highly active bactericides	20
High-throughput chemical genomic screening: a step-by-step workflow from plate to phenotype	20
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale	20
Targeting the gut-ovarian axis: Scutellaria baicalensis improves polycystic ovary syndrome by modulating gut microbiota composition and inhibiting the	20
Neutral plasma-activated solution reverses polymyxin to inhibit polymyxin-resistant Acinetobacter baumannii by promoting the release of ROS and destroyin	20
Multi-level regulation of hindgut homeostasis by volatile fatty acid administration in dairy goats: linking microbial metabolism to epithelial inflammation and barrier function	20
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut	20
Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs	20
S'Wipe: user-friendly stool collection for high-throughput gut metabolomics and multi-omics	20
Viral infection to the raphidophycean alga Heterosigma akashiwo affects both intracellular organic matter composition and dynamics of a coastal prokaryot	20
The dung beetle microbiome complements host metabolism and nutrition	20
Enterohemorrhagic Escherichia coli O157:H7 responds to norepinephrine gradients by tRNA reprogramming and codon-biased translation of virulence genes	20
Machine learning reveals proteome-encoded growth determinants underlying metabolic versatility of Rhodopseudomonas palustris on lignin-derived aromatics	20
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction	20
Plasmid-borne mcr-1 and replicative transposition of episomal and chromosomal bla NDM-1 , bla	19
Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China	19
From insect endosymbiont to phloem colonizer: comparative genomics unveils the lifestyle transition of phytopathogenic Arsenophonus strains	19
The macroecological dynamics of sojourn trajectories in the human gut microbiome	19
Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress	19
Dysbiosis of fecal virome in pediatric Crohn’s disease and its dynamic changes during infliximab therapy	19
A Genomic Survey of the Natural Product Biosynthetic Potential of Actinomycetes Isolated from New Zealand Lichens	19
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture	19
Nutrient Availability and Phage Exposure Alter the Quorum-Sensing and CRISPR-Cas-Controlled Population Dynamics of Pseudomonas aeruginosa	19
Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scale	19
Fiber, microbiomes, and SCFAs: insights from companion animal models to inform personalized nutrition	19
A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes	19
Chlamydial YAP activation in host endocervical epithelial cells mediates pro-fibrotic paracrine stimulation of fibroblasts	19
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies	18
Building a queer- and trans-inclusive microbiology conference	18
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85	18
Antiviral defense systems in the rumen microbiome	18
Molecular Origins of Transcriptional Heterogeneity in Diazotrophic Klebsiella oxytoca	18
Bacterial alarmone (p)ppGpp mediates the pathogenicity of Clavibacter michiganensis via a dual mechanism that affects both enzyme production and the Tat	18
Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition	18
The combination of Clostridium butyricum and Akkermansia muciniphila mitigates DSS-induced colitis and attenuates colitis-associated tumor	18
Microbial genetic screen identifies bacterial genes that compromise Caenorhabditis elegans reproductive fitness	18
Caenorhabditis nematodes influence microbiome and metabolome characteristics of their natural apple substrates over time	18
Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level	18
Wood–Ljungdahl pathway found in novel marine Korarchaeota groups illuminates their evolutionary history	18
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter	18
Genetic requirements for uropathogenic E. coli proliferation in the bladder cell infection cycle	18
Antimicrobial resistance in a protracted war setting: a review of the literature from Palestine	18
Allosteric regulation of pyruvate kinase enables efficient and robust gluconeogenesis by preventing metabolic conflicts and carbon overflow	18
Interactions between Culturable Bacteria Are Predicted by Individual Species’ Growth	18
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis	18
Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae	18
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities	18
Associations between the microbiome and immune responses to an adenovirus-based HIV-1 candidate vaccine are distinct between African and US cohorts	18
Use of single-cell technology to improve our understanding of the role of TLR2 in macrophage– Mycobacterium tuberculosis interaction	18
A CRISPR interference system for engineering biological nitrogen fixation	18
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution	18
The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome	18
Comprehensive characterization of gastrointestinal microbiota dysbiosis in patients with refractory Helicobacter pylori infection	18
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis	18
Taxonomic and metabolic development of the human gut microbiome across life stages: a worldwide metagenomic investigation	17
Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli	17
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs	17
Global distribution of isoprenoid quinones across Bacteria	17
NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data	17
Comparative metagenome-associated analysis of gut microbiota and antibiotic resistance genes in acute gastrointestinal injury patients with the risk of in-hospital mortality	17
Exposure to high altitude leads to disturbances in host metabolic homeostasis: study of the effects of hypoxia-reoxygenation and the associations between the microbiome and metabolome	17
Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities	17