mSystems

Article	Citations
Variations in the oral microbiome and metabolome of methamphetamine users	166
A systems-level insight into PHB-driven metabolic adaptation orchestrated by the PHB-binding transcriptional regulator AniA (PhaR)	94
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	87
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	82
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation	77
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community	73
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	72
Dispersal shapes compositional and functional diversity in aquatic microbial communities	65
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	63
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	61
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	59
Announcing the mSystems special collection on microbial dormancy	59
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	58
Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	56
Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	56
Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	56
More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems	53
Regulatory networks of FUR and NtcA are intertwined by transcriptional regulators, two-component systems, serine/threonine kinases, and sigma factors in Anabaena sp. PCC	53
Unraveling proteomic chaos by independent component analysis—ClpX proficiency promotes the iron and oxygen limitation responses of Staphylococcus aureus	52
A multi-omics analysis unveils functional and regulatory links between hydroxybenzene and aromatic amino acid metabolism in Candida albicans	50
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	48
Metabolomic profiling of Burkholderia thailandensis infection of airway epithelial cells provides insights into potential therapeutic targets	48
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	47
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	46
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	46

Gut microbiota contribute to high-altitude adaptation in tree sparrows	45
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	45
Visualizing the pH in Escherichia coli Colonies via the Sensor Protein mCherryEA Allows High-Throughput Screening of Mutant Libraries	44
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	44
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	43
Disturbance–diversity relationships of microbial communities change based on growth substrate	41
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis	41
A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	40
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	40
An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	39
Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics	39
Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins	39
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype	38
Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice	38
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	38
STENSL: Microbial Source Tracking with ENvironment SeLection	37
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	37
Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations	37
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	37
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	36
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	36
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	36
Correction for Boysen et al., “Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”	36
Human fecal microbiota transplantation attenuates high dietary oxalate-induced renal calcium oxalate crystal depositions in rats via repairing Allobaculum- related gut b	35
Microbiota-derived indole acetic acid extends lifespan through the AhR-Sirt2 pathway in Drosophila	35
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae	35
CRISPRi screening reveals E. coli ’s anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR	33
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research	33
Erratum for Chen et al., “Evolution of Ciprofloxacin Resistance-Encoding Genetic Elements in Salmonella”	33
The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1	33
Cyberlindnera jadinii and Kluyveromyces lactis , two fungi used in food processes, have potential probiotic effects on gut inflammation	33
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China	33
Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecie	32
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	32
Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil	32
Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations	32
Mutation in the two-component regulator BaeSR mediates cefiderocol resistance and enhances virulence in Acinetobacter baumannii	32
Interactive Analysis of Functional Residues in Protein Families	31
Genome-Scale Metabolic Modelling of Lifestyle Changes in Rhizobium leguminosarum	31
Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature	30
Association of body index with fecal microbiome in children cohorts with ethnic–geographic factor interaction: accurately using a Bayesian zero-inflated negative binomial regression model	30
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community	30
Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions	30
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants	30
Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants	30
Microbial Functional Diversity Correlates with Species Diversity along a Temperature Gradient	30
Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222	30
A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance	30
Gut-kidney axis modulation by viable and inactivated Akkermansia muciniphila mitigates avian hyperuricemia through microbial-metabolic crosstalk	29
Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution”	29

Characterizing alterations in the gut microbiota following postpartum weight change	29
Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods	29
Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children	29
Exploring the complex interplay between oral Fusobacterium nucleatum infection, periodontitis, and robust microRNA induction, including multiple known oncogenic miRNAs	29
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover	29
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4 , tet (X4), and	29
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology	29
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2	28
Connections between Exoproteome Heterogeneity and Virulence in the Oral Pathogen Aggregatibacter actinomycetemcomitans	28
Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”	28
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota	28
Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities	28
Metabolic biochemical models of N 2 fixation for sulfide oxidizers, methanogens, and methanotrophs	27
Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish	27
Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker	27
Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome	27
Bacterial taxonomic and functional changes following oral lyophilized donor fecal microbiota transplantation in patients with ulcerative colitis	27
Using Community Ecology Theory and Computational Microbiome Methods To Study Human Milk as a Biological System	27
Machine learning-based evaluation of risk factors for carbapenem-resistant Klebsiella pneumoniae dissemination in n	27
Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts	26
Migration and standing variation in vaginal and rectal yeast populations in recurrent vulvovaginal candidiasis	26
Microbial sensor variation across biogeochemical conditions in the terrestrial deep subsurface	26
Providing insight into the mechanism of action of cationic lipidated oligomers using metabolomics	26
Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas	26
Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study	25
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities	25
Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on the Cecal Microbiota of Laying Hens	25
Characterization and Spatial Mapping of the Human Gut Metasecretome	25
More than two components: complexities in bacterial phosphosignaling	25
Bacillus coagulans restores pathogen-induced intestinal dysfunction via acetate–FFAR2–NF-κB–MLCK–MLC axis in Apostichopus japonicus	25
Growth hormone combined with estrogen improves intrauterine adhesion fibrosis by downregulating endometrial microbial citraconic acid to target β-catenin protein	24
Phylo-Spec: a phylogeny-fusion deep learning model advances microbiome status identification	24
A data-driven approach for timescale decomposition of biochemical reaction networks	24
Involvement of Flagellin in Kin Recognition between Bacillus velezensis Strains	24
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions	24
Global m6A RNA and whole 5mC DNA methylation specifically contribute to cell replicative and premature senescence induced by extrinsic oxidative stress	24
N 2 Fixation in Trichodesmium Does Not Require Spatial Segregation from Photosynthesis	24
Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia	24
Microbial life-history strategies and genomic traits between pristine and cropland soils	23
Soil microbiome interventions for carbon sequestration and climate mitigation	23
AcaFinder: Genome Mining for Anti-CRISPR-Associated Genes	23
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity	23
Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers	23
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli	23
Disproportionation of Inorganic Sulfur Compounds by Mesophilic ChemolithoautotrophicCampylobacterota	23
Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success	22
Estimating the size of fields in biomedical sciences	22
Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity	22
Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow	22
Bile acid-gut microbiota imbalance in cholestasis and its long-term effect in mice	22
2024 Acknowledgment of mSystems Ad Hoc Reviewers	22
Systematic evaluation of phenotypic variations induced by prophages in a clinical isolate of Pseudomonas aeruginosa	22
Note on the Difference between the Principal Balance Analysis with NearestBalance and Constrained Methods	22
Identification of a Specific Biomarker of Acinetobacter baumannii Global Clone 1 by Machine Learning and PCR Related to Metabolic Fitness of ESKAPE Pathogens	22
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus	22
Dissecting two contrasting phytoplankton-symbiont interaction modes based on population dynamics and gene expression patterns	21
eIF6 deficiency regulates gut microbiota, decreases systemic inflammation, and alleviates atherosclerosis	21
Soil properties and plant functional traits have different importance in shaping rhizosphere soil bacterial and fungal communities in a meadow steppe	21
Sodium butyrate inhibits colorectal cancer development by reducing M2 macrophage polarization and PD-L1 expression	21
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia	21
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease	21
A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities	21
Adaptive attenuation of virulence in hypervirulent carbapenem-resistant Klebsiella pneumoniae	21
Regionalization and Shaping Factors for Microbiomes and Core Resistomes in Atmospheric Particulate Matters	21
Model-informed development of bacteriophage therapy: bridging in vitro and in vivo efficacy against multid	21
Identification of a crucial INO2 allele for enhancing ethanol resistance in an industrial fermentation strain of Saccharomyces cer	21
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings	21
Fine-Scale Reconstruction of the Evolution of FII-33 Multidrug Resistance Plasmids Enables High-Resolution Genomic Surveillance	21
Differences in salivary microbiome among children with tonsillar hypertrophy and/or adenoid hypertrophy	21
Temporal Dynamics of Rare and Abundant Soil Bacterial Taxa from Different Fertilization Regimes Under Various Environmental Disturbances	21
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium	21
Repurposing of the antimalarial agent tafenoquine to combat MRSA	21
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica	21
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits	21
Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle	20
Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism	20
Sharing of Antimicrobial Resistance Genes between Humans and Food Animals	20
The resistomes of rural and urban pigs and poultry in Ghana	20
Dynamics of the Gut Microbiome in Shigella -Infected Children during the First Two Years of Life	20
Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes	20

Predicting the Next Superspreader	20
The heterogenous and diverse population of prophages in Mycobacterium genomes	20
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism	20
2021 Acknowledgment of mSystems Ad Hoc Reviewers	20
From insect endosymbiont to phloem colonizer: comparative genomics unveils the lifestyle transition of phytopathogenic Arsenophonus strains	20
Reply to Austin and Korem, “Compositional transformations can reasonably introduce phenotype-associated values into sparse features”	20
Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China	19
The dung beetle microbiome complements host metabolism and nutrition	19
Viral infection to the raphidophycean alga Heterosigma akashiwo affects both intracellular organic matter composition and dynamics of a coastal prokaryot	19
Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples	19
Antibacterial effect of phage cocktails and phage-antibiotic synergy against pathogenic Klebsiella pneumoniae	19
Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress	19
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes	19
Cell behaviors underlying Myxococcus xanthus aggregate dispersal	19
Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997–2020	19
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	19
Augmenting bacterial similarity measures using a graph-based genome representation	19
Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles	19
Neutral plasma-activated solution reverses polymyxin to inhibit polymyxin-resistant Acinetobacter baumannii by promoting the release of ROS and destroyin	19
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction	19
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut	19
Multi-level regulation of hindgut homeostasis by volatile fatty acid administration in dairy goats: linking microbial metabolism to epithelial inflammation and barrier function	19
Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation	19
Unveiling the role of phages in shaping the periodontal microbial ecosystem	19
Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs	18
Genome-resolved insights into the bacterial phylum WOR-3: hydrogenotrophic metabolism and unique carbon fixation via archaeal form III RuBisCO	18
Unexplored diversity and potential functions of extra-chromosomal elements	18
Interactions between Culturable Bacteria Are Predicted by Individual Species’ Growth	18
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils	18
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale	18
Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study	18
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions	18
Race, the Vaginal Microbiome, and Spontaneous Preterm Birth	18
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems	18
Genetic requirements for uropathogenic E. coli proliferation in the bladder cell infection cycle	18
Chlamydial YAP activation in host endocervical epithelial cells mediates pro-fibrotic paracrine stimulation of fibroblasts	18
A CRISPR interference system for engineering biological nitrogen fixation	18
Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scale	18
Localization and symbiotic status of probiotics in the coral holobiont	18
Fiber, microbiomes, and SCFAs: insights from companion animal models to inform personalized nutrition	18
Global Composition of the Bacteriophage Community in Honey Bees	18
A Genomic Survey of the Natural Product Biosynthetic Potential of Actinomycetes Isolated from New Zealand Lichens	18
Comprehensive characterization of gastrointestinal microbiota dysbiosis in patients with refractory Helicobacter pylori infection	18
Global Analysis of Biomineralization Genes in Magnetospirillum magneticum AMB-1	18
The combination of Clostridium butyricum and Akkermansia muciniphila mitigates DSS-induced colitis and attenuates colitis-associated tumor	18
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica	18
Plasmid-borne mcr-1 and replicative transposition of episomal and chromosomal bla NDM-1 , bla	18
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics	18
A bacterial sensor taxonomy across earth ecosystems for machine learning applications	18
High-throughput chemical genomic screening: a step-by-step workflow from plate to phenotype	18
Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake	18
Metabolic remodeling of microorganisms by mobile genetic elements alters mutualistic community composition	17
Apex Predator Nematodes and Meso-Predator Bacteria Consume Their Basal Insect Prey through Discrete Stages of Chemical Transformations	17
A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes	17
Use of single-cell technology to improve our understanding of the role of TLR2 in macrophage– Mycobacterium tuberculosis interaction	17
Caenorhabditis nematodes influence microbiome and metabolome characteristics of their natural apple substrates over time	17
The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome	17
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis	17
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies	17
The Future Is Big—and Small: Remote Sensing Enables Cross-Scale Comparisons of Microbiome Dynamics and Ecological Consequences	17
Wood–Ljungdahl pathway found in novel marine Korarchaeota groups illuminates their evolutionary history	17
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture	17
Building a queer- and trans-inclusive microbiology conference	17
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities	17
Bacterial alarmone (p)ppGpp mediates the pathogenicity of Clavibacter michiganensis via a dual mechanism that affects both enzyme production and the Tat secretion system	17
Nutrient Availability and Phage Exposure Alter the Quorum-Sensing and CRISPR-Cas-Controlled Population Dynamics of Pseudomonas aeruginosa	17
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter	17
Molecular Origins of Transcriptional Heterogeneity in Diazotrophic Klebsiella oxytoca	17
Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level	17
Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition	17
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution	16
Interactions between native soil microbiome and a synthetic microbial community reveals bacteria with persistent traits	16
Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus	16
Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae	16
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis	16
NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data	16
Differential genome organization revealed by comparative topological analysis of Mycobacterium tuberculosis strains H37Rv and H37Ra	16
Allosteric regulation of pyruvate kinase enables efficient and robust gluconeogenesis by preventing metabolic conflicts and carbon overflow	16
BaeR and H-NS control CRISPR-Cas-mediated immunity and virulence in Acinetobacter baumannii	16
Interrogation of Essentiality in the Reconstructed Haemophilus influenzae Metabolic Network Identifies Lipid Metabolism Antimicrobial Targets: Preclinical Evaluation of a FabH β-Ketoacyl-ACP Synthase	16
GplR1, an unusual TetR-like transcription factor in Mycobacterium abscessus, controls the production of cell wall glycopeptidolipids, colony morphology,	16
Genetic and Transcriptomic Characteristics of RhlR-Dependent Quorum Sensing in Cystic Fibrosis Isolates of Pseudomonas aeruginosa	16
Comparative metagenome-associated analysis of gut microbiota and antibiotic resistance genes in acute gastrointestinal injury patients with the risk of in-hospital mortality	16
Interspecies relationships of natural amoebae and bacteria with C. elegans create environments propitious for multigenerational diapause	16
Antimicrobial resistance in a protracted war setting: a review of the literature from Palestine	16
Short-Chain Fatty Acids Reduced Renal Calcium Oxalate Stones by Regulating the Expression of Intestinal Oxalate Transporter SLC26A6	16
Genomic and functional characterization of a Butyricicoccus porcorum strain isolated from human gut microbiota	16
Antitumor Activities of tRNA-Derived Fragments and tRNA Halves from Non-pathogenic Escherichia coli Strains on Colorectal Cancer and Their Structure-Activity Relationship	16
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85	16
Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes	16
Antiviral defense systems in the rumen microbiome	16
Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples	15
Gut microbiome diversity within Clostridia is negatively associated with human obesity	15
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs	15
Revealing the Characteristics of Glucose- and Lactate-Based Chain Elongation for Caproate Production by Caproicibacterium lactatifermentans through Transcriptomic, Bioen	15