mSystems

Article	Citations
Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model	127
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	116
Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	105
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	92
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	90
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	84
Dispersal shapes compositional and functional diversity in aquatic microbial communities	82
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	80
Linking 16S rRNA Gene Classification to amoA Gene Taxonomy Reveals Environmental Distribution of Ammonia-Oxidizing Archaeal Clades in Peatland Soils	69
Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	69
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	62
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	62
An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	60
Announcing the mSystems special collection on microbial dormancy	60
Archaea Are Rare and Uncommon Members of the Mammalian Skin Microbiome	59
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	58
Disturbance–diversity relationships of microbial communities change based on growth substrate	58
More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems	57
STENSL: Microbial Source Tracking with ENvironment SeLection	56
Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics	56
Evolution of VIM-1-Producing Klebsiella pneumoniae Isolates from a Hospital Outbreak Reveals the Genetic Bases of the Loss of the Urease-Positive Identification Character	54
Visualizing the pH in Escherichia coli Colonies via the Sensor Protein mCherryEA Allows High-Throughput Screening of Mutant Libraries	53
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation	53
Variations in the oral microbiome and metabolome of methamphetamine users	52
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	52

A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	47
Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	47
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis	46
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community	46
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	46
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype	45
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	45
Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins	44
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	44
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	44
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	43
Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice	43
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	42
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	42
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	42
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	41
Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations	41
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	40
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	40
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	40
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae	39
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research	39
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants	38
Association of body index with fecal microbiome in children cohorts with ethnic–geographic factor interaction: accurately using a Bayesian zero-inflated negative binomial regression model	38
Mutation in the two-component regulator BaeSR mediates cefiderocol resistance and enhances virulence in Acinetobacter baumannii	38
Genome-Scale Metabolic Modelling of Lifestyle Changes in Rhizobium leguminosarum	38
Microbial Functional Diversity Correlates with Species Diversity along a Temperature Gradient	38
Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil	38
Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations	37
Microbiota-derived indole acetic acid extends lifespan through the AhR-Sirt2 pathway in Drosophila	37
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China	37
Cyberlindnera jadinii and Kluyveromyces lactis , two fungi used in food processes, have potential probiotic effects on gut inflammation	37
Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222	36
Association between Human Genetic Variants and the Vaginal Bacteriome of Pregnant Women	36
Population Genomics of emm4 Group A Streptococcus Reveals Progressive Replacement with a Hypervirulent Clone in North America	35
Metabolic Differentiation of Co-occurring Accumulibacter Clades Revealed through Genome-Resolved Metatranscriptomics	35
Role of the Discriminator Sequence in the Supercoiling Sensitivity of Bacterial Promoters	35
Marine Community Metabolomes Carry Fingerprints of Phytoplankton Community Composition	35
Interactive Analysis of Functional Residues in Protein Families	34
A Complex Microbial Interplay Underlies Recurrent Vulvovaginal Candidiasis Pathobiology	34
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology	34
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community	34
Expanding the Staphylococcus aureus SarA Regulon to Small RNAs	34
Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants	33
Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets	33
Erratum for Chen et al., “Evolution of Ciprofloxacin Resistance-Encoding Genetic Elements in Salmonella”	33
Predicting Microbiome Metabolism and Interactions through Integrating Multidisciplinary Principles	33
Correction for Boysen et al., “Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”	33
Evolution in a Community Context: towards Understanding the Causes and Consequences of Adaptive Evolution in the Human Gut Microbiota over Short Time Scales	32
Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods	32

A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance	32
The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1	32
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	31
Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecies cell fusion	31
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover	31
Characterizing alterations in the gut microbiota following postpartum weight change	30
Microbial sensor variation across biogeochemical conditions in the terrestrial deep subsurface	30
Connections between Exoproteome Heterogeneity and Virulence in the Oral Pathogen Aggregatibacter actinomycetemcomitans	30
Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions	30
Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas	29
Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts	29
Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study	29
Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities	29
Quantitative Proteomics Reveals that Hsp90 Inhibition Dynamically Regulates Global Protein Synthesis in Leishmania mexicana	29
Providing insight into the mechanism of action of cationic lipidated oligomers using metabolomics	29
Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”	29
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota	28
Emergence of Caenorhabditis elegans as a Model Organism for Dissecting the Gut–Brain Axis	28
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions	28
Accessory Genomic Epidemiology of Cocirculating Acinetobacter baumannii Clones	28
More than two components: complexities in bacterial phosphosignaling	27
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4 , tet (X4), and	27
Involvement of Flagellin in Kin Recognition between Bacillus velezensis Strains	27
Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia	27
Characterization and Spatial Mapping of the Human Gut Metasecretome	27
Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children	27
A data-driven approach for timescale decomposition of biochemical reaction networks	27
Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome	27
Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish	26
Using Community Ecology Theory and Computational Microbiome Methods To Study Human Milk as a Biological System	26
Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries	26
Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on the Cecal Microbiota of Laying Hens	26
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus	26
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2	26
Bacillus coagulans restores pathogen-induced intestinal dysfunction via acetate–FFAR2–NF-κB–MLCK–MLC axis in Apostichopus japonicus	26
Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution”	26
Systems Analysis of Gut Microbiome Influence on Metabolic Disease in HIV-Positive and High-Risk Populations	26
Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker	26
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities	25
Estimating the size of fields in biomedical sciences	25
Repurposing of the antimalarial agent tafenoquine to combat MRSA	25
Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing	25
A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities	25
N 2 Fixation in Trichodesmium Does Not Require Spatial Segregation from Photosynthesis	25
Lineage-Specific Growth Curves Document Large Differences in Response of Individual Groups of Marine Bacteria to the Top-Down and Bottom-Up Controls	25
Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity	25
Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow	24
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity	24
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli	24
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia	24
Regionalization and Shaping Factors for Microbiomes and Core Resistomes in Atmospheric Particulate Matters	24
Identification of a Specific Biomarker of Acinetobacter baumannii Global Clone 1 by Machine Learning and PCR Related to Metabolic Fitness of ESKAPE Pathogens	24
Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success	24
Genome-Wide Identification of Ralstonia solanacearum Genes Required for Survival in Tomato Plants	24
Note on the Difference between the Principal Balance Analysis with NearestBalance and Constrained Methods	24
2024 Acknowledgment of mSystems Ad Hoc Reviewers	24
Fine-Scale Reconstruction of the Evolution of FII-33 Multidrug Resistance Plasmids Enables High-Resolution Genomic Surveillance	24
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings	24
Hidden Treasures: Microbial Natural Product Biosynthesis off the Beaten Path	24
Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism	23
Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle	23
Plasmids Shape the Current Prevalence of tmexCD1-toprJ1 among Klebsiella pneumoniae in Food Production Chains	23
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus	23
AMiGA: Software for Automated Analysis of Microbial Growth Assays	23
Adaptive attenuation of virulence in hypervirulent carbapenem-resistant Klebsiella pneumoniae	23
Microbial life-history strategies and genomic traits between pristine and cropland soils	23
The Future of Virology is Synthetic	23
eIF6 deficiency regulates gut microbiota, decreases systemic inflammation, and alleviates atherosclerosis	23
Inactivation of Nitrite-Dependent Nitric Oxide Biosynthesis Is Responsible for Overlapped Antibiotic Resistance between Naturally and Artificially Evolved Pseudomonas aeruginosa	23
Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers	23
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease	23
Bile acid-gut microbiota imbalance in cholestasis and its long-term effect in mice	22
Recurrent Vulvovaginal Candidiasis: a Dynamic Interkingdom Biofilm Disease of Candida and Lactobacillus	22
Soil microbiome interventions for carbon sequestration and climate mitigation	22
Differences in salivary microbiome among children with tonsillar hypertrophy and/or adenoid hypertrophy	22
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits	22
Metabolic Features of Ganjang (a Korean Traditional Soy Sauce) Fermentation Revealed by Genome-Centered Metatranscriptomics	22
High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Inci	22
Dynamics of the Gut Microbiome in Shigella -Infected Children during the First Two Years of Life	22
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica	22

Disproportionation of Inorganic Sulfur Compounds by Mesophilic ChemolithoautotrophicCampylobacterota	21
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism	21
Temporal Dynamics of Rare and Abundant Soil Bacterial Taxa from Different Fertilization Regimes Under Various Environmental Disturbances	21
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems	21
2021 Acknowledgment of mSystems Ad Hoc Reviewers	21
Metagenome-Wide Analysis of Rural and Urban Surface Waters and Sediments in Bangladesh Identifies Human Waste as a Driver of Antibiotic Resistance	21
Facial Skin Microbiota-Mediated Host Response to Pollution Stress Revealed by Microbiome Networks of Individual	21
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium	21
A Genomic Survey of the Natural Product Biosynthetic Potential of Actinomycetes Isolated from New Zealand Lichens	21
Predicting the Next Superspreader	21
AcaFinder: Genome Mining for Anti-CRISPR-Associated Genes	21
Sharing of Antimicrobial Resistance Genes between Humans and Food Animals	21
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions	21
Towards the Characterization and Engineering of Bacteriophages in the Gut Microbiome	21
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale	21
Correction for Demory et al., “Linking Light-Dependent Life History Traits with Population Dynamics for Prochlorococcus and Cyanophage”	20
Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles	20
Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study	20
A bacterial sensor taxonomy across earth ecosystems for machine learning applications	20
Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997–2020	20
Plasmid-borne mcr-1 and replicative transposition of episomal and chromosomal bla NDM-1 , bla	20
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics	20
Augmenting bacterial similarity measures using a graph-based genome representation	20
Building Natural Product Libraries Using Quantitative Clade-Based and Chemical Clustering Strategies	20
Fiber, microbiomes, and SCFAs: insights from companion animal models to inform personalized nutrition	20
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica	20
Metagenomics Unveils Posidonia oceanica “Banquettes” as a Potential Source of Novel Bioactive Compounds and Carbohydrate Active Enzymes (CAZymes)	19
Cell behaviors underlying Myxococcus xanthus aggregate dispersal	19
Antibacterial effect of phage cocktails and phage-antibiotic synergy against pathogenic Klebsiella pneumoniae	19
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils	19
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut	19
Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities	19
Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation	19
Predicting Antimicrobial Resistance Using Partial Genome Alignments	19
Global Composition of the Bacteriophage Community in Honey Bees	19
Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake	19
The heterogenous and diverse population of prophages in Mycobacterium genomes	19
Unveiling the role of phages in shaping the periodontal microbial ecosystem	19
Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples	19
From insect endosymbiont to phloem colonizer: comparative genomics unveils the lifestyle transition of phytopathogenic Arsenophonus strains	19
Molecular Evolution and Adaptation of Livestock-Associated Methicillin-Resistant Staphylococcus aureus (LA-MRSA) Sequence Type 9	19
Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress	19
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	19
Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes	19
The resistomes of rural and urban pigs and poultry in Ghana	19
Localization and symbiotic status of probiotics in the coral holobiont	19
Oral Epithelial Cells Distinguish betweenCandidaSpecies with High or Low Pathogenic Potential through MicroRNA Regulation	19
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction	19
Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China	19
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes	19
Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs	19
Life Cycle Stage-Specific Accessibility of Leishmania donovani Chromatin at Transcription Start Regions	19
Use of single-cell technology to improve our understanding of the role of TLR2 in macrophage– Mycobacterium tuberculosis interaction	18
A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes	18
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis	18
Chlamydial YAP activation in host endocervical epithelial cells mediates pro-fibrotic paracrine stimulation of fibroblasts	18
The cvn8 Conservon System Is a Global Regulator of Specialized Metabolism in Streptomyces coelicolor during Interspecies Interactions	18
Developing Functional Genomics Platforms for Fungi	18
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities	18
Race, the Vaginal Microbiome, and Spontaneous Preterm Birth	18
Antiviral defense systems in the rumen microbiome	18
Wood–Ljungdahl pathway found in novel marine Korarchaeota groups illuminates their evolutionary history	18
Interrogation of Essentiality in the Reconstructed Haemophilus influenzae Metabolic Network Identifies Lipid Metabolism Antimicrobial Targets: Preclinical Evaluation of a FabH β-Ketoacyl-ACP Synthase	18
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution	18
Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency	18
Building a queer- and trans-inclusive microbiology conference	18
Caenorhabditis nematodes influence microbiome and metabolome characteristics of their natural apple substrates over time	18
Carbohydrate Metabolism Affects Macrophage-Mediated Killing of Enterococcus faecalis	18
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture	18
Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level	18
Molecular Origins of Transcriptional Heterogeneity in Diazotrophic Klebsiella oxytoca	18
A CRISPR interference system for engineering biological nitrogen fixation	17
Global Analysis of Biomineralization Genes in Magnetospirillum magneticum AMB-1	17
Allosteric regulation of pyruvate kinase enables efficient and robust gluconeogenesis by preventing metabolic conflicts and carbon overflow	17
Interactions between Culturable Bacteria Are Predicted by Individual Species’ Growth	17
Nutrient Availability and Phage Exposure Alter the Quorum-Sensing and CRISPR-Cas-Controlled Population Dynamics of Pseudomonas aeruginosa	17
Antibiotics Shift the Temperature Response Curve of Escherichia coli Growth	17
Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii	17
Antitumor Activities of tRNA-Derived Fragments and tRNA Halves from Non-pathogenic Escherichia coli Strains on Colorectal Cancer and Their Structure-Activity Relationship	17
Genetic and Transcriptomic Characteristics of RhlR-Dependent Quorum Sensing in Cystic Fibrosis Isolates of Pseudomonas aeruginosa	17
The combination of Clostridium butyricum and Akkermansia muciniphila mitigates DSS-induced colitis and attenuates colitis-associated tumor	17
The Future Is Big—and Small: Remote Sensing Enables Cross-Scale Comparisons of Microbiome Dynamics and Ecological Consequences	17
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85	17
Extending the Proteomic Characterization of Candida albicans Exposed to Stress and Apoptotic Inducers through Data-Independent Acquisition Mass Spectrometry	17
Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae	17
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter	17
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies	17
Genetic requirements for uropathogenic E. coli proliferation in the bladder cell infection cycle	17
Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus	17
Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition	17
The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome	17
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis	17
Apex Predator Nematodes and Meso-Predator Bacteria Consume Their Basal Insect Prey through Discrete Stages of Chemical Transformations	17
Bridging the Gap between Analytical and Microbial Sciences in Microbiome Research	16
Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples	16