mSystems

Article	Citations
Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins	151
Serine/threonine protein kinase mediates rifampicin resistance in Brucella melitensis through interacting with ribosomal protein RpsD and affecting antioxidant capacity	123
Association of intratumoral microbiome diversity with hepatocellular carcinoma prognosis	117
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	114
A call for healing and unity	104
Nutraceuticals Induced Changes in the Broiler Gastrointestinal Tract Microbiota	97
Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis	89
Reply to Bratchenko and Bratchenko, “Overestimation of the classification model for Raman spectroscopy data of biological samples”	89
Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References	83
Systems Biology behind Immunoprotection of Both Sheep and Goats after Sungri/96 PPRV Vaccination	78
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	76
Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment	75
Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations	67
Potential Role of Lysine Acetylation in Antibiotic Resistance of Escherichia coli	66
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	61
A quorum-sensing regulatory cascade for siderophore-mediated iron homeostasis in Chromobacterium violaceum	59
Metabolic network construction reveals probiotic-specific alterations in the metabolic activity of a synthetic small intestinal community	58
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs	57
Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	57
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	56
Catching SARS-CoV-2 by Sequence Hybridization: a Comparative Analysis	55
Microbial solutions must be deployed against climate catastrophe	55
STENSL: Microbial Source Tracking with ENvironment SeLection	55
Investigating the Unique Ability of Trichodesmium To Fix Carbon and Nitrogen Simultaneously Using MiMoSA	55
A Community Effort: Combining Functional Amplicon Sequencing and Metagenomics Reveals Potential Biosynthetic Gene Clusters Associated with Protective Phenotypes in Rhizosphere Microbiomes	53

Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation	52
Phylogenomic Characterization of a Novel Corynebacterium Species Associated with Fatal Diphtheritic Stomatitis in Endangered Yellow-Eyed Penguins	52
Ecophysiology of the Cosmopolitan OM252 Bacterioplankton ( Gammaproteobacteria )	51
Ecogenomics and Adaptation Strategies of Southern Ocean Viral Communities	50
MicroRNA-Mediated Regulation of Initial Host Responses in a Symbiotic Organ	49
Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O 2 Cyanobacterial Mat Community	48
Growth Substrate and Prophage Induction Collectively Influence Metabolite and Lipid Profiles in a Marine Bacterium	47
Quantifying the Evolutionary Constraints and Potential of Hepatitis C Virus NS5A Protein	46
Cultivating Healthy Connections: Exploring and Engineering the Microbial Flow That Shapes Microbiomes	45
The Split Personality of Beauveria bassiana: Understanding the Molecular Basis of Fungal Parasitism and Mutualism	44
Elucidation of the Pathogenicity-Associated Regulatory Network in Xanthomonas oryzae pv. oryzae	44
Predicting the Presence and Abundance of Bacterial Taxa in Environmental Communities through Flow Cytometric Fingerprinting	44
Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets	43
Extracellular Vesicles in Teasing Apart Complex Plant-Microbiota Links: Implications for Microbiome-Based Biotechnology	43
Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds	43
SubTap, a Versatile 3D Printed Platform for Eavesdropping on Extracellular Interactions	42
An Evolutionary Paradigm Favoring Cross Talk between Bacterial Two-Component Signaling Systems	42
Bacteria-Stimulated Metamorphosis: an Ocean of Insights from Investigating a Transient Host-Microbe Interaction	42
Phylogenomic Diversity Elucidates Mechanistic Insights into Lyme Borreliae-Host Association	40
2022 Acknowledgment of mSystems Ad Hoc Reviewers	40
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	40
Untargeted Fecal Metabolomic Analyses across an Industrialization Gradient Reveal Shared Metabolites and Impact of Industrialization on Fecal Microbiome-Metabolome Interactions	40
Giant Virus-Eukaryote Interactions as Ecological and Evolutionary Driving Forces	40
Philosophical Skepticism Concerning the Neutral Theory or Randomness: Misplaced or Misconceived? A Reply to Madison, “Stochasticity and Randomness in Community Assembly: Real or As-If?”	40
Interaction between Microbes and Host in Sow Vaginas in Early Pregnancy	39
Quantifying Microbial Activity In Situ : the Link between Cells and Cycles	39
Transcriptomics-Driven Characterization of LUZ100, a T7-like Pseudomonas Phage with Temperate Features	39
A High-Content Microscopy Screening Identifies New Genes Involved in Cell Width Control in Bacillus subtilis	38
Spatiotemporal Dynamics of Coastal Viral Community Structure and Potential Biogeochemical Roles Affected by an Ulva prolifera Green Tide	38
Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation	37
Evolution of VIM-1-Producing Klebsiella pneumoniae Isolates from a Hospital Outbreak Reveals the Genetic Bases of the Loss of the Urease-Positive Identification Character	37
Quantitative Proteomics Reveals Metabolic Reprogramming in Host Cells Induced by Trophozoites and Intermediate Subunit of Gal/GalNAc Lectins from Entamoeba histolytica	37
Revealing the Characteristics of Glucose- and Lactate-Based Chain Elongation for Caproate Production by Caproicibacterium lactatifermentans through Transcriptomic, Bioen	37
The Number and Type of Chaperone-Usher Fimbriae Reflect Phylogenetic Clade Rather than Host Range in Salmonella	36
What Lies Beneath? Taking the Plunge into the Murky Waters of Phage Biology	36
From genome to evolution: investigating type II methylotrophs using a pangenomic analysis	36
Individuality of the Extremely Premature Infant Gut Microbiota Is Driven by Ecological Drift	36
Flavomycin restores colistin susceptibility in multidrug-resistant Gram-negative bacteria	36
The timing of transcription of RpoS-dependent genes varies across multiple stresses in Escherichia coli K-12	35
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	35
Identification of distinct impacts of CovS inactivation on the transcriptome of acapsular group A streptococci	35
Genome-Resolved Metagenomics Informs the Functional Ecology of Uncultured Acidobacteria in Redox Oscillated Sphagnum Peat	35
Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli	35
Metabolic Network Models of the Gardnerella Pangenome Identify Key Interactions with the Vaginal Environment	35
Pangenome reconstruction of Lactobacillaceae metabolism predicts species-specific metabolic traits	35
A systemic approach to identify non-abundant immunogenic proteins in Lyme disease pathogens	34
Filamentous Bacteriophages and the Competitive Interaction between Pseudomonas aeruginosa Strains under Antibiotic Treatment: a Modeling Study	34
Multi-omics investigation of Porphyromonas gingivalis exacerbating acute kidney injury through the gut-kidney axis	34
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	33
Comparative Genomic and Metabolomic Analysis of Termitomyces Species Provides Insights into the Terpenome of the Fungal Cultivar and the Characteristic Odor of the Fungu	33

Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	33
A sequential one-pot approach for rapid and convenient characterization of putative restriction-modification systems	33
Computational Modeling of the Chlamydial Developmental Cycle Reveals a Potential Role for Asymmetric Division	33
Early life exposure to broccoli sprouts confers stronger protection against enterocolitis development in an immunological mouse model of inflammatory bowel disease	32
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	32
Fecal microbial gene transfer contributes to the high-grain diet-induced augmentation of aminoglycoside resistance in dairy cattle	32
Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals	32
PyAMPA: a high-throughput prediction and optimization tool for antimicrobial peptides	31
Predicting the final metabolic profile based on the succession-related microbiota during spontaneous fermentation of the starter for Chinese liquor making	31
Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods	31
Combinatorial control of Pseudomonas aeruginosa biofilm development by quorum-sensing and nutrient-sensing regulators	31
The phage shock protein (PSP) envelope stress response: discovery of novel partners and evolutionary history	31
Integrated metagenomic and metaproteomic analyses reveal bacterial micro-ecological mechanisms in coral bleaching	31
Potential of training of anti- Staphylococcus aureus therapeutic phages against Staphylococcus epidermidis multidrug-resistant isolates is	30
Functional analysis of cyclic diguanylate-modulating proteins in Vibrio fischeri	30
Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses	30
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	30
Soil diazotrophs sustain nitrogen fixation under high nitrogen enrichment via adjustment of community composition	30
Proteomic and transcriptomic analysis of selenium utilization in Methanococcus maripaludis	30
NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data	30
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	29
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	29
Surgical Treatment for Colorectal Cancer Partially Restores Gut Microbiome and Metabolome Traits	28
Interplay between bacterial 5′-NAD-RNA decapping hydrolase NudC and DEAD-box RNA helicase CsdA in stress responses	28
Cervicovaginal DNA Virome Alterations Are Associated with Genital Inflammation and Microbiota Composition	28
Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	28
A Single Intranasal Dose of Bacterial Therapeutics to Calves Confers Longitudinal Modulation of the Nasopharyngeal Microbiota: a Pilot Study	28
Variations in the oral microbiome and metabolome of methamphetamine users	28
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria	27
The European livestock resistome	27
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	27
Extreme environments simplify reassembly of communities of arbuscular mycorrhizal fungi	27
Host–gut microbiota interactions shape parasite infections in farmed Atlantic salmon	27
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	27
A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer	27
Dual RNA sequencing of Helicobacter pylori and host cell transcriptomes reveals ontologically distinct host-pathogen interaction	27
Antimicrobial and antibiofilm activity of human recombinant H1 histones against bacterial infections	26
Integrated Omics Approaches Revealed the Osmotic Stress-Responsive Genes and Microbiota in Gill of Marine Medaka	26
Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial interspecific competition	26
Dispersal shapes compositional and functional diversity in aquatic microbial communities	26
Visualizing the pH in Escherichia coli Colonies via the Sensor Protein mCherryEA Allows High-Throughput Screening of Mutant Libraries	26
Characteristics and immune functions of the endogenous CRISPR-Cas systems in myxobacteria	26
Lack of abundant core virome in Culex mosquitoes from a temperate climate region despite a mosquito species-specific virome	26
A multi-omic assessment of the mechanisms of intestinal microbes used to treat diarrhea in early-weaned lambs	26
Machine learning-based classification reveals distinct clusters of non-coding genomic allelic variations associated with Erm-mediated antibiotic resistance	25
Discovery of the Streamlined Haloarchaeon Halorutilus salinus , Comprising a New Order Widespread in Hypersaline Environments across the World	25
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	25
Dynamics of the viral community on the surface of a French smear-ripened cheese during maturation and persistence across production years	25
Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities	25
Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence	25
Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation	25
A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	25
Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia	25
Species-Specific Endotoxin Stimulus Determines Toll-Like Receptor 4- and Caspase 11-Mediated Pathway Activation Characteristics	24
Bacterial community function increases leaf growth in a pitcher plant experimental system	24
Economic impact of metagenomic next-generation sequencing versus traditional bacterial culture for postoperative central nervous system infections using a decision analysis mode: study protocol for a	24
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	24
Interspecies relationships of natural amoebae and bacteria with C. elegans create environments propitious for multigenerational diapause	24
Disturbance–diversity relationships of microbial communities change based on growth substrate	24
ArtSymbioCyc, a metabolic network database collection dedicated to arthropod symbioses: a case study, the tripartite cooperation in Sipha maydis	24
Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples	24
Phage SEP1 hijacks Staphylococcus epidermidis stationary cells’ metabolism to replicate	24
More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems	23
The gut microbiome in end-stage lung disease and lung transplantation	23
Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data	23
The direct and indirect drivers shaping RNA viral communities in grassland soils	23
The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations	23
Diversity, composition, and networking of saliva microbiota distinguish the severity of COVID-19 episodes as revealed by an analysis of 16S rRNA variable V1-V3 region sequences	23
Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model	23
Genomic analysis of antibiotic resistance genes and mobile genetic elements in eight strains of nontyphoid Salmonella	23
Dietary L-arabinose-induced gut dysbiosis exacerbates Salmonella infection outcome	23
Gut microbiome diversity and biogeography for Chinese bumblebee Bombus pyrosoma	23
Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale	23
The Stability of Phyto-Zooplanktonic Networks Varied with Zooplanktonic Sizes in Chinese Coastal Ecosystem	23
High-Content Imaging to Phenotype Antimicrobial Effects on Individual Bacteria at Scale	23
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	23
Deciphering Metabolic Currencies That Support Marine Microbial Networks	22
Feeling hormonal? Insights into bacterial auxin sensing and its physiological effects	22
Gut Microbiome Alterations Associated with Diabetes in Mexican Americans in South Texas	22
Patterns and Drivers of nirK -Type and nirS -Type Denitrifier Community Assembly along an Elevation Gradient	22

Announcing the mSystems special collection on microbial dormancy	22
Host-associated microbes mitigate the negative impacts of aquatic pollution	22
Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems	22
E. coli Toxin YjjJ (HipH) Is a Ser/Thr Protein Kinase That Impacts Cell Division, Carbon Metabolism, and Ribosome Assembly	22
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	22
Charting the Lipopeptidome of Nonpathogenic Pseudomonas	22
Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs	22
A survey of fecal virome and bacterial community of the diarrhea-affected cattle in northeast China reveals novel disease-associated ecological risk factors	22
FluG and FluG-like FlrA Coregulate Manifold Gene Sets Vital for Fungal Insect-Pathogenic Lifestyle but Not Involved in Asexual Development	21
Erratum for Hu et al., “Effects of ‘Healthy’ Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats”	21
CRISPR-Cas-Guided Mutagenesis of Chromosome and Virulence Plasmid in Shigella flexneri by Cytosine Base Editing	21
Erratum for Shu et al., “Transcriptomic-Guided Phosphonate Utilization Analysis Unveils Evidence of Clathrin-Mediated Endocytosis and Phospholipid Synthesis in the Model Diatom, Phaeodactylum tricornu	21
Erratum for Quinn et al., “Bridging the Gap between Analytical and Microbial Sciences in Microbiome Research”	21
The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method	21
Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”	21
Erratum for Wang et al., “Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhib	21
Community- and genome-based evidence for a shaping influence of redox potential on bacterial protein evolution	20
Association of tumor microbiome with survival in resected early-stage PDAC	20
Correction for Anderson et al., “Building Natural Product Libraries Using Quantitative Clade-Based and Chemical Clustering Strategies”	20
DNA Extraction and Host Depletion Methods Significantly Impact and Potentially Bias Bacterial Detection in a Biological Fluid	20
Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments	20
Erratum for Brüwer et al., “ In situ cell division and mortality rates of SAR11, SAR86, Bacteroidetes , and Aurantivirga	20
Epigenetic programming of host lipid metabolism associated with resistance to TST/IGRA conversion after exposure to Mycobacterium tuberculosis	20
Identification and Differentiation of Pseudomonas Species in Field Samples Using an rpoD Amplicon Sequencing Methodology	20
The Microbiota-Gut-Brain Axis in Sepsis-Associated Encephalopathy	20
Bridging the Gap between Analytical and Microbial Sciences in Microbiome Research	20
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	20
Comparative metagenome-associated analysis of gut microbiota and antibiotic resistance genes in acute gastrointestinal injury patients with the risk of in-hospital mortality	20
Multi-omics analysis reveals associations between gut microbiota and host transcriptome in colon cancer patients	20
Integrating sequence composition information into microbial diversity analyses with k-mer frequency counting	20
COVID-19 Pandemic in Lebanon: One Year Later, What Have We Learnt?	20
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	20
Chasing Ghosts: Race, Racism, and the Future of Microbiome Research	20
Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics	20
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	19
Bacteria-Oil Microaggregates Are an Important Mechanism for Hydrocarbon Degradation in the Marine Water Column	19
Diverse Viruses in Deep-Sea Hydrothermal Vent Fluids Have Restricted Dispersal across Ocean Basins	19
Long-Term Effects of Developmental Exposure to Oxycodone on Gut Microbiota and Relationship to Adult Behaviors and Metabolism	19
A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the Saccharomyces Genus in Fermentation	19
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis	19
Archaea Are Rare and Uncommon Members of the Mammalian Skin Microbiome	19
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation	19
Bacterial Epigenomics: Coming of Age	19
Phylogenomic Analyses of Snodgrassella Isolates from Honeybees and Bumblebees Reveal Taxonomic and Functional Diversity	19
Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome	19
Linking 16S rRNA Gene Classification to amoA Gene Taxonomy Reveals Environmental Distribution of Ammonia-Oxidizing Archaeal Clades in Peatland Soils	19
Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles	19
Taxonomic and metabolic development of the human gut microbiome across life stages: a worldwide metagenomic investigation	19
An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	19
Gut Microbiome Structure and Association with Host Factors in a Korean Population	19
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling	19
Phages-bacteria interactions underlying the dynamics of polyhydroxyalkanoate-producing mixed microbial cultures via meta-omics study	18
Identification of Novel Viruses and Their Microbial Hosts from Soils with Long-Term Nitrogen Fertilization and Cover Cropping Management	18
Comprehensive Scanning of Prophages in Lactobacillus : Distribution, Diversity, Antibiotic Resistance Genes, and Linkages with CRISPR-Cas Systems	18
Adaptive laboratory evolution reveals regulators involved in repressing biofilm development as key players in Bacillus subtilis root colonization	18
The Future of Bacteriophage Therapy Will Promote Antimicrobial Susceptibility	18
More Robust Co-Occurrence Patterns and Stronger Dispersal Limitations of Bacterial Communities in Wet than Dry Seasons of Riparian Wetlands	18
The Infectious Dose Shapes Vibrio cholerae Within-Host Dynamics	18
Comparative Molecular and Immunoregulatory Analysis of Extracellular Vesicles from Candida albicans and Candida auris	18
Refined Quantification of Infection Bottlenecks and Pathogen Dissemination with STAMPR	18
Gut microbiome diversity within Clostridia is negatively associated with human obesity	18
Fecal Microbiome Transplantation from Children with Autism Spectrum Disorder Modulates Tryptophan and Serotonergic Synapse Metabolism and Induces Altered Behaviors in Germ-Free Mice	18
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community	18
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype	18
Oral microbial communities in children, caregivers, and associations with salivary biomeasures and environmental tobacco smoke exposure	18
Microbiome Restructuring: Dominant Coral Bacterium Endozoicomonas Species Respond Differentially to Environmental Changes	18
Gut microbiota-derived gamma-aminobutyric acid improves host appetite by inhibiting satiety hormone secretion	17
Urban Wildlife Crisis: Australian Silver Gull Is a Bystander Host to Widespread Clinical Antibiotic Resistance	17
Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches	17
Florfenicol administration in piglets co-selects for multiple antimicrobial resistance genes	17
MDITRE: Scalable and Interpretable Machine Learning for Predicting Host Status from Temporal Microbiome Dynamics	17
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	17
Metagenomic Discovery of “ Candidatus Parvarchaeales”-Related Lineages Sheds Light on Adaptation and Diversification from Neutral-Thermal to Acidic-Mesothermal Environme	17
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	17
Elucidating the Beta-Diversity of the Microbiome: from Global Alignment to Local Alignment	17
Gene Coexpression Connectivity Predicts Gene Targets Underlying High Ionic-Liquid Tolerance in Yarrowia lipolytica	17
Global Distribution of mcr Gene Variants in 214K Metagenomic Samples	17
Multi-omics mechanical analysis of gut microbiota, carboxylic acids, and cardiac gene expression interaction triggering diabetic cardiomyopathy	17
Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria	17
The ability in managing reactive oxygen species affects Escherichia coli persistence to ampicillin after nutrient shifts	17
Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil	17
The host transcriptional response to superinfection by influenza A virus and Streptococcus pneumoniae	17
Phylogenetic Analysis and Virulence Characteristics of Methicillin-Resistant Staphylococcus aureus ST45 in China: a Hyper-Virulent Clone Associated with Bloodstream Infections	17
Competitive Transmission of Carbapenem-Resistant Klebsiella pneumoniae in a Newly Opened Intensive Care Unit	17
Distinct Responses of Rare and Abundant Microbial Taxa to In Situ Chemical Stabilization of Cadmium-Contaminated Soil	17
The Slowdown of Growth Rate Controls the Single-Cell Distribution of Biofilm Matrix Production via an SinI-SinR-SlrR Network	17
Host Factors Associated with Gut Mycobiome Structure	17
Metabolomics and metagenomics reveal the impact of γδ T inhibition on gut microbiota and metabolism in periodontitis-promoting OSCC	17
Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg	17
Correction for Kwan et al., “Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes”	17
Distribution and Genomic Variation of Thermophilic Cyanobacteria in Diverse Microbial Mats at the Upper Temperature Limits of Photosynthesis	17
Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes	17
Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling	17
Microbiota Perturbation or Elimination Can Inhibit Normal Development and Elicit a Starvation-Like Response in an Omnivorous Model Invertebrate	17
Evolutionary Ecology of Natural Comammox Nitrospira Populations	17