OOIR: Observatory of International Research

Papers

(The H4-Index of mSystems is 48. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases	480
2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission	259
Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype Worsening	180
SARS-CoV-2 and ORF3a: Nonsynonymous Mutations, Functional Domains, and Viral Pathogenesis	174
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes	155
Gut Microbiota and Metabolome Alterations Associated with Parkinson’s Disease	151
High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County	98
Soil Carbon, Nitrogen, and Phosphorus Cycling Microbial Populations and Their Resistance to Global Change Depend on Soil C:N:P Stoichiometry	92
Precise Species Identification for Enterobacter : a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii	92
Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors	92
Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus	89
Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles	89
Deciphering the Structural Diversity and Classification of the Mobile Tigecycline Resistance Gene tet (X)-Bearing Plasmidome among Bacteria	84
Shotgun Metagenomics of Gut Microbiota in Humans with up to Extreme Longevity and the Increasing Role of Xenobiotic Degradation	82
Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives	81
Phylogenetic Distribution of Plastic-Degrading Microorganisms	81
Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling	80
Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants	78
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes	77
Space Is More Important than Season when Shaping Soil Microbial Communities at a Large Spatial Scale	70
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition	69
High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids	69
Dominant Bacterial Phyla from the Human Gut Show Widespread Ability To Transform and Conjugate Bile Acids	67
Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria	67
Pivotal Roles for pH, Lactate, and Lactate-Utilizing Bacteria in the Stability of a Human Colonic Microbial Ecosystem	66

High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Inci	65
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome	65
Energetic Basis of Microbial Growth and Persistence in Desert Ecosystems	64
Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications	64
Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson’s Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder	63
Administration of Exogenous Melatonin Improves the Diurnal Rhythms of the Gut Microbiota in Mice Fed a High-Fat Diet	63
Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes	62
Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment	61
The Gut Microbial Diversity of Newly Diagnosed Diabetics but Not of Prediabetics Is Significantly Different from That of Healthy Nondiabetics	61
Correlations between α-Linolenic Acid-Improved Multitissue Homeostasis and Gut Microbiota in Mice Fed a High-Fat Diet	59
RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery	57
DOE JGI Metagenome Workflow	56
Alterations in the Gut Microbiome in the Progression of Cirrhosis to Hepatocellular Carcinoma	55
The Gut Microbiome and Individual-Specific Responses to Diet	55
Gestational Diabetes Mellitus Is Associated with Reduced Dynamics of Gut Microbiota during the First Half of Pregnancy	55
Genomic and Chemical Diversity of Bacillus subtilis Secondary Metabolites against Plant Pathogenic Fungi	55
Comparative Genomic Analysis of Rapidly Evolving SARS-CoV-2 Reveals Mosaic Pattern of Phylogeographical Distribution	54
Impact of Glyphosate on the Honey Bee Gut Microbiota: Effects of Intensity, Duration, and Timing of Exposure	52
Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria	50
Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment	48
Emerging Transcriptional and Genomic Mechanisms Mediating Carbapenem and Polymyxin Resistance in Enterobacteriaceae : a Systematic Review of Current Reports	48
Fecal Microbiome Transplantation from Children with Autism Spectrum Disorder Modulates Tryptophan and Serotonergic Synapse Metabolism and Induces Altered Behaviors in Germ-Free Mice	48
Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean	48