SoftwareX

Article	Citations
FS-Studio: An extensive and efficient feature selection experimentation tool for Weka Explorer	112
APOTHEOSIS: An efficient approximate similarity search system	110
decideXpert: Collaborative system using AHP-TOPSIS and fuzzy techniques for multicriteria group decision-making	68
GraphOptima: A graph layout optimization framework for visualizing large networks	56
LeXInt: GPU-accelerated exponential integrators package	55
pyRoCS: A Python package to evaluate the resilience of complex systems	52
LOBEFIT: LEO satellite broadcast ephemeris fitting open-source software based on automatic differentiation technique	48
The IDL tool suite: Specifying and analyzing inter-parameter dependencies in web APIs	43
PyDicer: An open-source python library for conversion and analysis of radiotherapy DICOM data	42
CacheSim: A cache simulation framework for evaluating caching algorithms on resource-constrained edge devices	37
OpenVR: Teleoperation for manipulation	36
EduGuard RetainX: An advanced analytical dashboard for predicting and improving student retention in tertiary education	36
NAVI Assistant: A tool to integrate chatbots into EUD Solutions	34
Multtestlib: A Python package for performing unit tests using multiprocessing	33
WiN-GUI Version 2: A graphical tool for neuron-based encoding	32
shinyHugePlot: An R package for displaying the features of data with a huge sample size	31
GPFniCS: A generalised phase field method to model fracture	30
MetaCluster: An open-source Python library for metaheuristic-based clustering problems	27
Hybrid adaptive battery parameter estimation approach for equivalent circuit model toolbox	25
Web-NDefA: Open-source and web-based online platform for 3-D deformation analysis of geodetic networks	25
AKFruitYield: Modular benchmarking and video analysis software for Azure Kinect cameras for fruit size and fruit yield estimation in apple orchards	23
RankspeQ: An R package platform for genotype characterization and performance-ranking based on MultispeQ measurements	22
rockphypy: An extensive Python library for rock physics modeling	22
Daily Video: A tool for quality of experience (QoE) in long-term context research	21
KMstability: R tools to report the stability and precision of Kaplan–Meier estimates as well as measures of follow-up in time-to-event studies	20

VELCRO: A visual-based programming tool for effortless deep learning model construction	20
MetricHunter: A software metric dataset generator utilizing SourceMonitor upon public GitHub repositories	19
GCPU_OpticalFlow: A GPU accelerated Python software for strain measurement	19
Blink: An educational software debugger for Scratch	18
In-Cognitive: A web-based Python application for fuzzy cognitive map design, simulation, and uncertainty analysis based on the Monte Carlo method	18
MAWA: Enhancing mobile web browsing through web augmentation for improved user experience	18
pyGLLE: A Python toolkit for solving the generalized Lugiato–Lefever equation	17
mics-library: A Python package for reproducible studies on the Multiple Indicator Cluster Survey	17
A modular LabVIEW application frame for Knudsen Effusion Mass Spectrometry instrument control	17
SOUL: Scala Oversampling and Undersampling Library for imbalance classification	17
PanNDE: A modular architecture for high-performance NDE simulation	17
New, flexible and open-source fisheries self-reporting app: The Shiny4SelfReport	16
SCSV_IPS: A software for the estimation of the shear coefficient of spin viscosity during the movement of a ferrofluid under the effect of an external rotating magnetic field	15
An open-source application software to determine the preconsolidation pressure of soils in incremental loading oedometer testing: pySigmaP	15
tx2_fcnn_node: An open-source ROS compatible tool for monocular depth reconstruction	15
Toolbox to simulate and mitigate COVID-19 propagation	15
Executable HTML	14
McDAPS: A multi-channel physiological signals display and analysis system for clinical researchers	14
Adapting LIGO workflows to run in the Open Science Grid	14
Gym-preCICE: Reinforcement learning environments for active flow control	14
Video quality metrics toolkit: An open source software to assess video quality	14
pyGNMF: A Python library for implementation of generalised non-negative matrix factorisation method	13
JMetaBFOP: A tool for solving global optimization problems	13
CACPPAF, a COMSOL application to characterize polyelectrolyte properties of actin filaments	13
Open-source skull reconstruction with MONAI	13
LiveDewStream: A stream processing platform for running in-lab distributed deep learning inferences on smartphone clusters at the edge	13
Motion planning for triple-axis spectrometers	13
Stplanpy: A sustainable transportation planner for Python	12
PyOPAsolver: A python based tool for ordinal priority approach operations and normalization	12
CVIK: A Matlab-based cluster validity index toolbox for automatic data clustering	12
GPR: A Python implementation of an extremely simple classifier based on fuzzy logic and gene expression programming	12
SootLib: A soot model library for combustion simulation	12
Visualizing Abaqus output database in ParaView: A universal converter in Python and C++	12
Smyrida: A web application for process mining and interactive visualization	12
Update 2.0 to rheed++: A complex computer model for dynamical one-beam calculations of RHEED intensity oscillations	11
Morphogenesis of Isobenefit urbanism: Isobenefit-cities simulator	11
CityZones: A geospatial multi-tier software tool to compute urban risk zones	11
PowerDynamics.jl—An experimentally validated open-source package for the dynamical analysis of power grids	11
OpenIPDM: A probabilistic framework for estimating the deterioration and effect of interventions on bridges	11
The SiLA 2 Manager for rapid device integration and workflow automation	11
ACME (Agile Crop Model Ensemble): A package to generate and run large virtual experiments with ensembles of crop simulation models	11
Editorial Board	11
SST v1.0.0 with C API: Pluggable security solution for the Internet of Things	11
PÉEK: A cloud-based application for automatic electrocardiogram pre-diagnosis	11
Stop@: A framework for scalable and noise-resistant stop-move segmentation of large datasets of trajectories in outdoor and indoor spaces	11
Drop Project: An automatic assessment tool for programming assignments	10
Exploiting Simu5G for generating datasets for training and testing AI models for 5G/6G network applications	10
AllInOne Pre-processing: A comprehensive preprocessing framework in plant field phenotyping	10
EBSDPolygonizer: Enabling realistic microstructural modelling	10
JaxSGMC: Modular stochastic gradient MCMC in JAX	10

ennemi: Non-linear correlation detection with mutual information	10
Roborueda: Python-based GUI to control a wheelchair and monitor user posture	10
ADITU: A mesh-free formulation for the solution of Helmholtz equation in bounded and unbounded domains	10
LeXInt: Package for exponential integrators employing Leja interpolation	10
Q-Facies: A tool for the quantitative interpretation of groundwater hydrochemical facies	10
MOOSE Optimization Module: Physics-constrained optimization	10
CLUSplus: A decision tree-based framework for predicting structured outputs	10
TreeSim: An object-oriented individual tree simulator and 3D visualization tool in Python	10
OpenFL-XAI: Federated learning of explainable artificial intelligence models in Python	10
OpenImpala: OPEN source IMage based PArallisable Linear Algebra solver	10
iBluff: An open-source R package for geomorphic analysis of coastal bluffs/cliffs	9
NCC: An R-package for analysis and simulation of platform trials with non-concurrent controls	9
MNEflow: Neural networks for EEG/MEG decoding and interpretation	9
Taming the Panda with Python: A powerful duo for seamless robotics programming and integration	9
juSPH: A Julia-based open-source package of parallel Smoothed Particle Hydrodynamics (SPH) for dam break problems	9
PYCASO: Python module for calibration of cameras by Soloff’s method	9
SPARC: Simulation Package for Ab-initio Real-space Calculations	9
IDOL: A web application for mixed integer linear multiobjective optimization	9
BOXVIA: Bayesian optimization executable and visualizable application	9
ELC: Software and tutorial for finite-element modeling of electrochemical desalination	9
DockerChannel: A framework for evaluating information leakages of Docker containers	9
Thermofeel: A python thermal comfort indices library	9
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud	9
Saihu: A common interface of worst-case delay analysis tools for time-sensitive networks	8
TD-COF: A new method for detecting tandem duplications in next generation sequencing data	8
HOST: Harmonic oscillator seasonal-trend model for analyzing the reoccurring nature of extreme events	8
iCorrVision-2D: An integrated python-based open-source Digital Image Correlation software for in-plane measurements (Part 1)	8
PPWSim: Privacy preserving wireless sensor network simulator	8
HICA: A MATLAB-based hierarchical image clustering algorithm for classifying parts suitable for additive and traditional manufacturing technologies	8
AquaGS: An integrated GUI pipeline for genomic selection in aquaculture breeding	8
Chaak: Urban Hydrological Impact modeling	8
CyEnGNet—App: A new Cytoscape app for the reconstruction of large co-expression networks using an ensemble approach	8
RPaSDT—Rumor Propagation and Source Detection Toolkit	8
TermX: The semantic interoperability, knowledge management and sharing platform	8
DeepWealth: A generalizable open-source deep learning framework using satellite images for well-being estimation	8
mango: A modular python-based agent simulation framework	8
A directed greybox fuzzing tool for continuous integration	8
A Python-based tool for constructing observables from the DSN’s closed-loop archival tracking data files	8
Identifying safety–critical concerns in unmanned aerial vehicle software platforms with SALIENT	7
EvalNE: A framework for network embedding evaluation	7
RCE: An Integration Environment for Engineering and Science	7
PyECOM: A Python tool for analyzing and simulating Energy Communities	7
Dental loop SnP: Speech and phonetic pattern recognition	7
Web-based surface plasmon resonance signal processing system for fast analyte analysis	7
JuBat: A Julia-based framework for battery modelling using finite element method	7
Unidimensional forced convection generalized Graetz solutions	7
FastRealBoostBins: An ensemble classifier for fast predictions implemented in Python via numba.jit and numba.cuda	7
Image2DEM: A geometrical digital twin generator for the detailed structural analysis of existing masonry infrastructure stock	7
life: A flexible, high performance library for the numerical solution of complex finite element problems	7
STUDIO: A Python graphical tool for analyzing street user observations from video data	7
A Robot Operating System (ROS) package for mapping flow fields in rivers via Particle Image Velocimetry (PIV)	7
baskexact: An R package for analytical calculation of basket trial operating characteristics	7
OpenSeesPyView: Python programming-based visualization and post-processing tool for OpenSeesPy	7
MultiFEBE: A multi-domain finite element–boundary element solver for linear mixed-dimensional mechanical problems	7
EmintWeb: Creation of embedded web applications in C++ for specific systems	7
GeoWeightedModel : An R-Shiny package for Geographically Weighted Models	7
Version 0.2 - CrackDect: Detecting crack densities in images of fiber-reinforced polymers	6
pySuStaIn: A Python implementation of the Subtype and Stage Inference algorithm	6
histolab: A Python library for reproducible Digital Pathology preprocessing with automated testing	6
An application for solving minimization problems using the Harmony search algorithm	6
Hydrogen Permeation and Absorption Tool (HyPAT v2.0): An update to facilitate analyses of data from hydrogen absorption experiments	6
CNV-Z; a new tool for detecting copy number variation in next generation sequencing data	6
MWSegEval—An image analysis toolbox for microwave breast images	6
Open community platform for hearing aid algorithm research: open Master Hearing Aid (openMHA)	6
PND: Physics-informed neural-network software for molecular dynamics applications	6
Corrigendum to “BioNES: A plug-and-play MATLAB-based tool to use NES games for multimodal biofeedback” [SoftwareX 19 (2022) 101184]	6
Update 3.1 to FonaDyn — a system for real-time analysis of the electroglottogram, over the voice range	6
RegionTPMS — Region based triply periodic minimal surfaces (TPMS) for 3-D printed multiphase bone scaffolds with exact porosity values	6
cmaRs: A powerful predictive data mining package in R	6
TROVA: TRansport Of water VApor	6
Dreamento: an open-source dream engineering toolbox for sleep EEG wearables	6
SimCES platform for modular simulation: Featuring platform independence, container ecosystem, and development toolkit	6
OptiGUI DataCollector: A graphical user interface for automating the data collecting process in optical and photonics labs	6
Automatic dataset builder for Machine Learning applications to satellite imagery	6
Beachmeter – a simple tool for semi-automatic beach morphodynamics measurement	6
Version [1.2]- [pyrepo-mcda - Reference Objects based MCDA Software Package]	6
Version [1.1]- [Handling decision-making in intuitionistic fuzzy environment: PyIFDM package]	6
genieclust: Fast and robust hierarchical clustering	6
I-STL2MOOSE: From STL data to integrated volumetrical meshes for MOOSE	6
SACETraj: An AutoCAD Catmull-Rom Spline Trajectory Interpolator	6

2BarG—A program to process split Hopkinson (Kolsky) bar test results	6
CoFly: An automated, AI-based open-source platform for UAV precision agriculture applications	6
Applying positivity constraints to q-space trajectory imaging: The QTI+ implementation	6
WACline: A Software Product Line to harness heterogeneity in Web Annotation	6
DynaProg: Deterministic Dynamic Programming solver for finite horizon multi-stage decision problems	6
Version [1.1]- [Crispyn — A Python library for determining criteria significance with objective weighting methods]	6
PTRAIL — A python package for parallel trajectory data preprocessing	5
microStabilize: In-plane microstructure stabilization in optical microscopy via normalized correlation coefficient matching method	5
The Forest Conservation Evaluation Tool: Accessible impact evaluation for Latin America	5
Release 2.0 — NEMSIM-RT: A real-time distributed spiking neural network simulator	5
Excursiona: A collaborative mobile application for excursions in nature	5
HISAPS: High-order smoothing spline with automatic parameter selection and shape constraints	5
IMCP: A Python package for imbalanced and multiclass data classifier performance comparison	5
FMD: A parallel library for performing classical molecular dynamics simulations	5
COMBEAMS: A numerical tool for the structural verification of steel-concrete composite beams	5
PACU: Precision agriculture computational utilities	5
BiometricIdentity dApp: Decentralized biometric authentication based on fuzzy commitment and blockchain	5
PSPSO: A package for parameters selection using particle swarm optimization	5
MarineEpi: A GUI-based Matlab toolbox to simulate marine pathogen transmission	5
CombinatorixPy: Advancing mixture descriptors for computational chemistry	5
FRESA.CAD::ILAA: Estimating the exploratory residualization transform	5
Corrigendum to “CDB-AP: An application for coincidence Doppler broadening spectroscopy analysis” [SoftwareX 23 (2023) 101475]	5
Numba-MPI v1.0: Enabling MPI communication within Numba/LLVM JIT-compiled Python code	5
pyFDM: A Python library for uncertainty decision analysis methods	5
GCBICT: Green Coffee Bean Identification Command-line Tool	5
AISLE: A matchmaking tool for pairing SMEs with digital solutions	5
Update (3.0) to LyapXool: Quadratic programming	5
LEI2JSON: Schema-based validation and conversion of livestock event information	5
AMLBID: An auto-explained Automated Machine Learning tool for Big Industrial Data	5
Fast shallow water-wave solver for plane inclined beaches	5
Frouros: An open-source Python library for drift detection in machine learning systems	5
Cloud2FEM: A finite element mesh generator based on point clouds of existing/historical structures	5
PyWindAM: A Python software for wind field analysis and cloud-based data management	5
Version 1.3-BANSHEE—A MATLAB toolbox for Non-Parametric Bayesian Networks	5
Subgroups: A Python library for Subgroup Discovery	5
schlably: A Python framework for deep reinforcement learning based scheduling experiments	5
EcgScorer: An open source MATLAB toolbox for ECG signal quality assessment	5
LIC: An R package for optimal subset selection for distributed data	5
“Version 1.3.0 pyfao56: FAO-56 evapotranspiration in Python”	5
Input/Output Library for Higher-Order Computational Fluid Dynamics Data	5
MSCPDPLab: A MATLAB toolbox for transfer learning based multi-source cross-project defect prediction	5
Kernel Tuning Toolkit	5
ag5Tools: An R package for downloading and extracting agrometeorological data from the AgERA5 database	4
Imaging framework: An interoperable and extendable connector for image-related Java frameworks	4
OpenMechanochem: A Python module for mechanochemical simulations	4
Ranflood: A mitigation tool based on the principles of data flooding against ransomware	4
direpack: A Python 3 package for state-of-the-art statistical dimensionality reduction methods	4
SMART-TeleLoad: A new graphic user interface to generate affective loads for teleoperation	4
GPRlab: A ground penetrating radar data processing and analysis software based on MATLAB	4
REFRAME–A software framework for managing reactive dependencies in object-oriented applications	4
EasyEIS: A software tool to perform electrochemical impedance spectroscopy using a source measure unit	4
MaMiCo 2.0: An enhanced open-source framework for high-performance molecular-continuum flow simulation	4
ShakerMaker: A framework that simplifies the simulation of seismic ground-motions	4
DECiM: Determination of equivalent circuit models	4
Krypton: Nonlinear Parabolized Stability Equation solver for transonic flow in curvilinear coordinates	4
FDT: A python toolkit for fake image and video detection	4
Editorial Board	4
omicR: A tool to facilitate BLASTn alignments for sequence data	4
Sas-temper: Software for fitting small-angle scattering data that provides automated reproducibility characterization	4
SMS-Builder: An adaptive software tool for building systematic mapping studies	4
YADPF: A reusable deterministic dynamic programming implementation in MATLAB	4
eeglib: A Python module for EEG feature extraction	4
EMPIRE: An open-source model based on multi-horizon programming for energy transition analyses	4
An open-source framework for publishing/subscribing IEC 61850 R-GOOSE and R-SV	4
ODMeans: An R package for global and local cluster detection for Origin–Destination GPS data	4
LiPTool: A tool for learning-based autonomous index placement in databases	4
WITio: A MATLAB data evaluation toolbox to script broader insights into big data from WITec microscopes	4
MatHH: A Matlab-based Hyper-Heuristic framework	4
SLSL-QPSO: Quantum-behaved particle swarm optimization with short-lived swarm layers	4
The StaDyn programming language	4
Grant drafting support with guided generative AI software	4
PKgui: A GUI software for Polubarinova-Kochina’s solutions of steady unconfined groundwater flow	4
VEqMon2D—Equations of motion generation tool of 2D vehicles with Matlab	4
RealModel: A system for modeling and visualizing sedimentary rocks	4
QuITO: Numerical software for constrained nonlinear optimal control problems	4
TimeAwareBPMN-js: An editor and temporal verification tool for Time-Aware BPMN processes	4
MicroVIP: Microscopy image simulation on the Virtual Imaging Platform	4
FEniCS–preCICE: Coupling FEniCS to other simulation software	4
CitySolution: A complaining task distributive mobile application for smart city corporation using deep learning	4
GraSPI: Extensible software for the graph-based quantification of morphology in organic electronics	4
BBR: An open-source standard workflow based on biophysical crop parameters for automatic Botrytis cinerea assessment in vineyards	4
Acrossim: A toolkit for cross-platform integration of CFD simulation data in computer graphics	4
Analysing the resilience of agricultural production systems with ResiPy, the Python production resilience estimation package	4
WebRISC-V: A 32/64-bit RISC-V pipeline simulation tool	4
NEFBDAA — .NET Environment for Building Dynamic Angular Applications	4
Deepness: Deep neural remote sensing plugin for QGIS	4
Raman Selection Rules Calculator: A simplified selection rules calculator for Raman spectroscopy experiment	4
CoastalImageLib: An open- source Python package for creating common coastal image products	4
swSim: Solid wave simulation	4
DFT-MF: Enhanced deepfake detection using mouth movement and transfer learning	4
AGAT: Building and evaluating binary partition trees for image segmentation	4
SiTree: A framework to implement single-tree simulators	3
highRES-Europe: The high spatial and temporal Resolution Electricity System model for Europe	3
PowerSystems.jl — A power system data management package for large scale modeling	3
edgar: An R package for the U.S. SEC EDGAR retrieval and parsing of corporate filings	3