Neurophotonics

Article	Citations
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	104
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	77
The Ten Commandments of Everyday Leadership	54
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	49
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	45
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	41
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	35
Review of cocaine-induced brain vascular and cellular function changes measured in vivo with optical imaging	35
Advances in computer-generated holography for targeted neuronal modulation	33
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	32
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	27
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	25
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	23
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	22
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	22
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	21
Shedding light on functional near-infrared spectroscopy and open science practices	21
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	21
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	20
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	20
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	20
Special Section Guest Editorial: Frontiers in Neurophotonics	20
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	19
Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina	19
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	19

Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	17
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	16
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	16
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	15
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	15
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	15
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	15
Zika virus encephalitis causes transient reduction of functional cortical connectivity	15
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	14
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	14
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	14
Semiautomated analysis of an optical ATP indicator in neurons	14
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	14
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	13
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	13
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	13
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	13
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	12
2023 List of Reviewers	12
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	12
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	12
Characterizing vascular function in mouse models of Alzheimer’s disease, atherosclerosis, and mixed Alzheimer’s and atherosclerosis	12
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	12
Introduction to the shared near infrared spectroscopy format	12
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	11
Precision of time-resolved near-infrared spectroscopy-based measurements of cerebral oxygenation in preterm infants	11
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	11
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	10
Taste for discovery: a conversation with neuroscientist Serge Charpak	10
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	10
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	10
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	10
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	10
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	10
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	10
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	9
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	9
Warriors of Science: Ukraine’s Academic Endeavors	9
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	9
Consistency of children’s hemodynamic responses during spontaneous speech	9
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	9
Visible-light optical coherence tomography and its applications	9
Diversity is our Strength	9
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	8
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	8
Fiber photometry-based investigation of brain function and dysfunction	8
Quantitative analysis of lipofuscin in neurodegenerative diseases using serial sectioning two-photon microscopy and fluorescence lifetime imaging microscopy	8
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	8
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	8
Deep learning in fNIRS: a review	7

Recent advances in bioluminescent probes for neurobiology	7
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	7
2024 List of Reviewers	7
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	7
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	7
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	7
Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals	7
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	7
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	7
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	7
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	7
Diffuse correlation spectroscopy: current status and future outlook	7
Brain imaging across scales: an interview with Prof. Mark Schnitzer	7
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	7
Assaying activity-dependent arteriole and capillary responses in brain slices	7
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	7
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	6
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	6
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	6
Multimode fiber endoscopes for computational brain imaging	6
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	6
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	6
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	6
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	5
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	5
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	5
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	5
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	5
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
Population imaging of internal state circuits relevant to psychiatric disease: a review	5
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	5
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	5
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Spatiotemporal patterns of spontaneous brain activity: a mini-review	5
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	5
Special Section Guest Editorial: Computational Approaches for Neuroimaging	5
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	5
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	5
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	5
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	5
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
2022 List of Reviewers	4
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	4
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	4
A low-cost FPGA-based approach for pile-up corrected high-speed in vivo FLIM imaging	4
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
Optical constraints on two-photon voltage imaging	4
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	4
Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model	4
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	4
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	4
Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli	4
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	4
Multifocal microscopy for functional imaging of neural systems	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	4
devfOLD: a toolbox for designing age-specific fNIRS channel placement	4
Seizure event detection using intravital two-photon calcium imaging data	4
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	4
Psychedelics and fNIRS neuroimaging: exploring new opportunities	4
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	4
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	3
Special Section Guest Editorial: Molecular Neurophotonics	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Comparison of diffuse correlation spectroscopy, interferometric diffusing wave spectroscopy, and speckle contrast optical spectroscopy for blood flow monitoring	3
FiPhA: an open-source platform for fiber photometry analysis	3
Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array	3

Contractile apparatus in CNS capillary pericytes	3
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	3
Stimulation intensities influence the effects of spinal cord stimulation in disorders of consciousness: an fNIRS study	3
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	3
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
Linking brain activity across scales with simultaneous opto- and electrophysiology	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	3
Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice	3
Connecting the dots between cell populations, whole-brain activity, and behavior	3
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	2
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	2
Transcranial photobiomodulation (808 nm) attenuates pentylenetetrazole-induced seizures by suppressing hippocampal neuroinflammation, astrogliosis, and microgliosis in peripubertal rats	2
Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption	2
Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy	2
Engineering luminopsins with improved coupling efficiencies	2
fNIRS-derived neurocognitive ratio as a biomarker for neuropsychiatric diseases	2
Emerging technologies toward the integration of multiple functionalities on non-planar implantable neurophotonics probes	2
Review on data analysis methods for mesoscale neural imaging in vivo	2
Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	2
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	2
Expansion microscopy reveals neural circuit organization in genetic animal models	2
Brain-wide 3D neuron detection and mapping with deep learning	2
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	2
Photon transport through the entire adult human head	2
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination	2
Cerebrovascular reactivity to carbon dioxide tension in newborns: data from combined time-resolved near-infrared spectroscopy and diffuse correlation spectroscopy	2
Vertebrate behavioral thermoregulation: knowledge and future directions	2
Evaluation of compact pulsed lasers for two-photon microscopy using a simple method for measuring two-photon excitation efficiency	2
Motion artifact correction for resting-state neonatal functional near-infrared spectroscopy through adaptive estimation of physiological oscillation denoising	2
Developing customized NIRS-EEG for infant sleep research: methodological considerations	2
Introduction to the Special Issue “Understanding Brain Disease with Live Imaging”	2
Addressing annotation and data scarcity when designing machine learning strategies for neurophotonics	2
How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS?	2
Arterial-wall origin and transient dynamics of flow- and vaso-motion activities in the awake mouse brain revealed by laser speckle contrast imaging	2
DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging	2
Special Section Guest Editorial: Thirty Years of Functional Near-Infrared Spectroscopy	2
Human brain tissue identification using coherent anti-Stokes Raman scattering spectroscopy and diffuse reflectance spectroscopy for deep brain stimulation surgery	2
Navigating neurophotonics, words of wisdom: an interview with Professor David Kleinfeld	2
Self-administered transcranial direct current stimulation treatment of knee osteoarthritis alters pain-related fNIRS connectivity networks	2