Neurophotonics

Article	Citations
Best practices for fNIRS publications	95
NIRS-KIT: a MATLAB toolbox for both resting-state and task fNIRS data analysis	70
Quantitative comparison of correction techniques for removing systemic physiological signal in functional near-infrared spectroscopy studies	61
Direct assessment of extracerebral signal contamination on optical measurements of cerebral blood flow, oxygenation, and metabolism	41
Optical imaging and spectroscopy for the study of the human brain: status report	41
Short-channel regression in functional near-infrared spectroscopy is more effective when considering heterogeneous scalp hemodynamics	40
Disrupted functional brain connectivity networks in children with attention-deficit/hyperactivity disorder: evidence from resting-state functional near-infrared spectroscopy	38
Analysis methods for measuring passive auditory fNIRS responses generated by a block-design paradigm	33
Improved accuracy of cerebral blood flow quantification in the presence of systemic physiology cross-talk using multi-layer Monte Carlo modeling	29
Superconducting nanowire single-photon sensing of cerebral blood flow	29
Deep learning in fNIRS: a review	27
Suite of methods for assessing inner retinal temporal dynamics across spatial and temporal scales in the living human eye	27
Implantable photonic neural probes for light-sheet fluorescence brain imaging	26
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	26
High-sensitivity multispeckle diffuse correlation spectroscopy	25
Subcellular resolution three-dimensional light-field imaging with genetically encoded voltage indicators	20
Comparison of short-channel separation and spatial domain filtering for removal of non-neural components in functional near-infrared spectroscopy signals	20
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	19
Errata: Best practices for fNIRS publications	19
Neurophotonic Tools for Microscopic Measurements and Manipulation: Status Report	17
Systematic review of combined functional near-infrared spectroscopy and transcranial direct-current stimulation studies	16
Evaluating a new generation of wearable high-density diffuse optical tomography technology via retinotopic mapping of the adult visual cortex	16
Optimization of time domain diffuse correlation spectroscopy parameters for measuring brain blood flow	15
Longitudinal effect of transcranial direct current stimulation on knee osteoarthritis patients measured by functional infrared spectroscopy: a pilot study	15
Aberration correction in stimulated emission depletion microscopy to increase imaging depth in living brain tissue	14

Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	14
Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy	14
Frontal cerebral oxygenation asymmetry: intersubject variability and dependence on systemic physiology, season, and time of day	14
Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters	13
Overview of extracellular vesicle characterization techniques and introduction to combined reflectance and fluorescence confocal microscopy to distinguish extracellular vesicle subpopulations	13
Design and validation of a mechanically flexible and ultra-lightweight high-density diffuse optical tomography system for functional neuroimaging of newborns	13
Identifying optimal parameters for infrared neural stimulation in the peripheral nervous system	12
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	12
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	12
Group-level cortical functional connectivity patterns using fNIRS: assessing the effect of bilingualism in young infants	12
In vivo photoacoustic guidance of stem cell injection and delivery for regenerative spinal cord therapies	11
Polychromatic digital holographic microscopy: a quasicoherent-noise-free imaging technique to explore the connectivity of living neuronal networks	11
Transcranial photobiomodulation (808 nm) attenuates pentylenetetrazole-induced seizures by suppressing hippocampal neuroinflammation, astrogliosis, and microgliosis in peripubertal rats	11
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	11
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	10
Using near-infrared spectroscopy and a random forest regressor to estimate intracranial pressure	10
Video-based motion-resilient reconstruction of three-dimensional position for functional near-infrared spectroscopy and electroencephalography head mounted probes	10
Horizontal-scanning attenuated total reflection terahertz imaging for biological tissues	10
Concurrent OCT and OCT angiography of retinal neurovascular degeneration in the 5XFAD Alzheimer’s disease mice	10
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	10
Measuring neuronal activity with diffuse correlation spectroscopy: a theoretical investigation	9
On fractality of functional near-infrared spectroscopy signals: analysis and applications	9
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	9
Quantitative birefringence microscopy for imaging the structural integrity of CNS myelin following circumscribed cortical injury in the rhesus monkey	9
Diffuse correlation spectroscopy: current status and future outlook	9
Enhanced spatiotemporal resolution imaging of neuronal activity using joint electroencephalography and diffuse optical tomography	9
Characterizing reproducibility of cerebral hemodynamic responses when applying short-channel regression in functional near-infrared spectroscopy	9
How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS?	9
Resting-state brain networks in neonatal hypoxic-ischemic brain damage: a functional near-infrared spectroscopy study	8
Immune–vascular mural cell interactions: consequences for immune cell trafficking, cerebral blood flow, and the blood–brain barrier	8
Cranial window for longitudinal and multimodal imaging of the whole mouse cortex	8
Investigating developmental changes in scalp-to-cortex correspondence using diffuse optical tomography sensitivity in infancy	8
Spatiotemporal patterns of spontaneous brain activity: a mini-review	8
Performance comparison of systemic activity correction in functional near-infrared spectroscopy for methods with and without short distance channels	8
Interferometric diffuse optics: recent advances and future outlook	7
Multivariate Kalman filter regression of confounding physiological signals for real-time classification of fNIRS data	7
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	7
Photonics tools begin to clarify astrocyte calcium transients	7
Functional brain connectivity related to surgical skill dexterity in physical and virtual simulation environments	7
Task-related brain activity and functional connectivity in upper limb dystonia: a functional magnetic resonance imaging (fMRI) and functional near-infrared spectroscopy (fNIRS) study	7
Simultaneous two-photon activation and imaging of neural activity based on spectral–temporal modulation of supercontinuum light	7
Using anatomically defined regions-of-interest to adjust for head-size and probe alignment in functional near-infrared spectroscopy	7
Monitoring the motor cortex hemodynamic response function in freely moving walking subjects: a time-domain fNIRS pilot study	7
INS-fOCT: a label-free, all-optical method for simultaneously manipulating and mapping brain function	7
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	6
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	6
devfOLD: a toolbox for designing age-specific fNIRS channel placement	6
Fiberoptic array for multiple channel infrared neural stimulation of the brain	6
Using functional near-infrared spectroscopy to study the early developing brain: future directions and new challenges	6
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	6

Depth-targeted intracortical microstroke by two-photon photothrombosis in rodent brain	6
Advances in computer-generated holography for targeted neuronal modulation	6
Anisotropic light scattering from myelinated axons in the spinal cord	6
Influence of source–detector separation on diffuse correlation spectroscopy measurements of cerebral blood flow with a multilayered analytical model	6
Simple methodology to visualize whole-brain microvasculature in three dimensions	6
Current opinions on the present and future use of functional near-infrared spectroscopy in psychiatry	6
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	5
Pupil engineering for extended depth-of-field imaging in a fluorescence miniscope	5
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	5
Using preregistration as a tool for transparent fNIRS study design	5
Microglia activation visualization via fluorescence lifetime imaging microscopy of intrinsically fluorescent metabolic cofactors	5
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	5
Diamond nanopillar arrays for quantum microscopy of neuronal signals	5
Contractile apparatus in CNS capillary pericytes	5
Deformable mirror-based axial scanning for two-photon mammalian brain imaging	5
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	5
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	5
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	5
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	5
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	5
Psychedelics and fNIRS neuroimaging: exploring new opportunities	5
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	5
Acute administration of methylphenidate differentially affects cortical processing of emotional facial expressions in attention-deficit hyperactivity disorder children as studied by functional near-in	5
Review of data processing of functional optical microscopy for neuroscience	5
Cerebral hemodynamic monitoring of Parkinson’s disease patients with orthostatic intolerance during head-up tilt test	5
Infrared inhibition impacts on locally initiated and propagating action potentials and the downstream synaptic transmission	4
Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	4
Correction of global physiology in resting-state functional near-infrared spectroscopy	4
Regional analysis of cerebral hemodynamic changes during the head-up tilt test in Parkinson’s disease patients with orthostatic intolerance	4
Differential effects of photobiomodulation interval schedules on brain cytochrome c-oxidase and proto-oncogene expression	4
Isotonic ion replacement can lower the threshold for selective infrared neural inhibition	4
Functional near-infrared spectroscopy in pediatric clinical research: Different pathophysiologies and promising clinical applications	4
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	4
High-speed quantitative optical imaging of absolute metabolism in the rat cortex	4
Blood vessel tail artifacts suppression in optical coherence tomography angiography	4
Influence of oversimplifying the head anatomy on cerebral blood flow measurements with diffuse correlation spectroscopy	4
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	4
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	4
In vivo detection of murine glioblastoma through Raman and reflectance fiber-probe spectroscopies	4
Cerebrovascular reactivity measured in awake mice using diffuse correlation spectroscopy	4
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	4
Functional neuroimaging of sensorimotor cortices in postmenopausal women with type II diabetes	4
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	3
Semiautomated analysis of an optical ATP indicator in neurons	3
Open-source statistical and data processing tools for wide-field optical imaging data in mice	3
Guiding functional near-infrared spectroscopy optode-layout design using individual (f)MRI data: effects on signal strength	3
Two-in-one system and behavior-specific brain synchrony during goal-free cooperative creation: an analytical approach combining automated behavioral classification and the event-related generalized li	3
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	3
Reinforced thinned-skull window for repeated imaging of the neonatal mouse brain	3
In vivo voltage-sensitive dye imaging of mouse cortical activity with mesoscopic optical tomography	3
Predicting poststroke dyskinesia with resting-state functional connectivity in the motor network	3
Signal regression in frequency-domain diffuse optical tomography to remove superficial signal contamination	3
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	3
Spatially resolved estimation of metabolic oxygen consumption from optical measurements in cortex	3
FDISCO+: a clearing method for robust fluorescence preservation of cleared samples	3
Improving laser standards for three-photon microscopy	3
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	3
Fiber-based lactate recordings with fluorescence resonance energy transfer sensors by applying an magnetic resonance-informed correction of hemodynamic artifacts	3
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	3
High-precision neural stimulation through optoacoustic emitters	2
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	2
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	2
Can pain under anesthesia be measured? Pain-related brain function using functional near-infrared spectroscopy during knee surgery	2
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	2
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	2
Introduction to the shared near infrared spectroscopy format	2
Interpolated functional manifold for functional near-infrared spectroscopy analysis at group level	2
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	2
Statistical approaches to temporal and spatial autocorrelation in resting-state functional connectivity in mice measured with optical intrinsic signal imaging	2
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	2
High-speed optical coherence tomography angiography for the measurement of stimulus-induced retrograde vasodilation of cerebral pial arteries in awake mice	2
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	2
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	2
Shedding light on functional near-infrared spectroscopy and open science practices	2
Parallel factor analysis for multidimensional decomposition of functional near-infrared spectroscopy data	2
Toward an integrative neurovascular framework for studying brain networks	2
Review on data analysis methods for mesoscale neural imaging in vivo	2
Precision of time-resolved near-infrared spectroscopy-based measurements of cerebral oxygenation in preterm infants	2
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	2
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	2

Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	2
Connecting the dots between cell populations, whole-brain activity, and behavior	2
Revealing the spatiotemporal requirements for accurate subject identification with resting-state functional connectivity: a simultaneous fNIRS-fMRI study	2
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	2
Reproducibility of infant fNIRS studies: a meta-analytic approach	2
Imaging dendritic spines in the hippocampus of a living mouse by 3D-stimulated emission depletion microscopy	2
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	2
Correlating functional near-infrared spectroscopy with underlying cortical regions of 0-, 1-, and 2-year-olds using theoretical light propagation analysis	2
MOCA: a systematic toolbox for designing and assessing modular functional near-infrared brain imaging probes	2
Applications of near-infrared spectroscopy in neurocritical care	2
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	2
Evaluation of residual cognition in patients with disorders of consciousness based on functional near-infrared spectroscopy	2
Computational optics for high-throughput imaging of neural activity	2
Differentiation of primary central nervous system lymphoma from glioblastoma using optical coherence tomography based on attention ResNet	2
Optimizing a two-layer method for hybrid diffuse correlation spectroscopy and frequency-domain diffuse optical spectroscopy cerebral measurements in adults	2
Comparison of functional activation responses from the auditory cortex derived using multi-distance frequency domain and continuous wave near-infrared spectroscopy	2