Neurophotonics

Article	Citations
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	107
The Ten Commandments of Everyday Leadership	83
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	56
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	51
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	49
Transport in the brain studied with in vivo two-photon microscopy: the impact of spatial and temporal resolution	45
Advances in computer-generated holography for targeted neuronal modulation	36
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	35
Review of cocaine-induced brain vascular and cellular function changes measured in vivo with optical imaging	34
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	33
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	28
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	27
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	24
Shedding light on functional near-infrared spectroscopy and open science practices	23
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	23
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	22
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	22
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	21
Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina	21
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	21
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	21
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	21
Special Section Guest Editorial: Frontiers in Neurophotonics	20
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	19
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	19

Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	18
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	16
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	16
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	16
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	16
Zika virus encephalitis causes transient reduction of functional cortical connectivity	16
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	15
Maternal anxiety shapes prediction error responses in the infant brain	15
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	15
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	14
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	14
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	14
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	14
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	14
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	14
Semiautomated analysis of an optical ATP indicator in neurons	14
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	13
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	13
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	12
Real-time monitoring of wavelet-based neurovascular coupling in neonates with hypoxic ischemic encephalopathy using an hourly time window	12
2023 List of Reviewers	12
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	12
Characterizing vascular function in mouse models of Alzheimer’s disease, atherosclerosis, and mixed Alzheimer’s and atherosclerosis	12
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	12
Emerging panorama of functional near-infrared spectroscopy in Latin America	12
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	11
Precision of time-resolved near-infrared spectroscopy-based measurements of cerebral oxygenation in preterm infants	11
Introduction to the shared near infrared spectroscopy format	11
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	11
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	11
Consistency of children’s hemodynamic responses during spontaneous speech	10
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	10
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	10
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	10
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	10
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	10
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	9
Diffuse correlation spectroscopy: current status and future outlook	9
Warriors of Science: Ukraine’s Academic Endeavors	9
Taste for discovery: a conversation with neuroscientist Serge Charpak	9
Deep learning in fNIRS: a review	9
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	9
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	9
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	9
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	9
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	9
Recent advances in bioluminescent probes for neurobiology	8
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	8
Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals	8
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	8

Visible-light optical coherence tomography and its applications	8
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	8
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	7
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	7
Quantitative analysis of lipofuscin in neurodegenerative diseases using serial sectioning two-photon microscopy and fluorescence lifetime imaging microscopy	7
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	7
Assaying activity-dependent arteriole and capillary responses in brain slices	7
2024 List of Reviewers	7
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	7
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	7
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	7
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	7
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	7
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	7
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	7
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	7
Fiber photometry-based investigation of brain function and dysfunction	7
Brain network evolution in late preterm to term infants: a near-infrared spectroscopy imaging study	7
Brain imaging across scales: an interview with Prof. Mark Schnitzer	7
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	7
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger	6
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	6
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	6
Multimode fiber endoscopes for computational brain imaging	6
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	6
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	6
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	6
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	6
Population imaging of internal state circuits relevant to psychiatric disease: a review	5
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	5
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	5
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	5
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	5
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	5
Spatiotemporal patterns of spontaneous brain activity: a mini-review	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	5
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	5
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	5
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	5
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	4
Functional specialization for language processing in inferior frontal regions during early childhood: evidence from functional near-infrared spectroscopy individual functional channels of interest app	4
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	4
Linking brain activation to clinical outcomes: an fNIRS study in cochlear implant users and normal hearing individuals	4
Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli	4
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	4
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
Optical constraints on two-photon voltage imaging	4
2022 List of Reviewers	4
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	4
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	4
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	4
Seizure event detection using intravital two-photon calcium imaging data	4
High-density multidistance fNIRS enhances detection of brain activity during a word-color Stroop task	4
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	4
Special Section Guest Editorial: Computational Approaches for Neuroimaging	4
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	4
Multifocal microscopy for functional imaging of neural systems	4
devfOLD: a toolbox for designing age-specific fNIRS channel placement	4
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	4
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Linking brain activity across scales with simultaneous opto- and electrophysiology	3
Special Section Guest Editorial: Molecular Neurophotonics	3
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	3
Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice	3
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
Connecting the dots between cell populations, whole-brain activity, and behavior	3

Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	3
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	3
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
Psychedelics and fNIRS neuroimaging: exploring new opportunities	3
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	3
Comparison of diffuse correlation spectroscopy, interferometric diffusing wave spectroscopy, and speckle contrast optical spectroscopy for blood flow monitoring	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Contractile apparatus in CNS capillary pericytes	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
A low-cost FPGA-based approach for pile-up corrected high-speed in vivo FLIM imaging	3
Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model	3
Stimulation intensities influence the effects of spinal cord stimulation in disorders of consciousness: an fNIRS study	3
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	3
FiPhA: an open-source platform for fiber photometry analysis	3
Introduction to the Special Issue “Understanding Brain Disease with Live Imaging”	3
Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Robust photogrammetric scalp morphology estimation for functional optical neuroimaging	2
Navigating neurophotonics, words of wisdom: an interview with Professor David Kleinfeld	2
Vertebrate behavioral thermoregulation: knowledge and future directions	2
Cerebrovascular reactivity to carbon dioxide tension in newborns: data from combined time-resolved near-infrared spectroscopy and diffuse correlation spectroscopy	2
Transcranial photobiomodulation (808 nm) attenuates pentylenetetrazole-induced seizures by suppressing hippocampal neuroinflammation, astrogliosis, and microgliosis in peripubertal rats	2
Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption	2
Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	2
Human brain tissue identification using coherent anti-Stokes Raman scattering spectroscopy and diffuse reflectance spectroscopy for deep brain stimulation surgery	2
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	2
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	2
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	2
Photon transport through the entire adult human head	2
Addressing annotation and data scarcity when designing machine learning strategies for neurophotonics	2
Emerging technologies toward the integration of multiple functionalities on non-planar implantable neurophotonics probes	2
Self-administered transcranial direct current stimulation treatment of knee osteoarthritis alters pain-related fNIRS connectivity networks	2
Brain-wide 3D neuron detection and mapping with deep learning	2
Motion artifact correction for resting-state neonatal functional near-infrared spectroscopy through adaptive estimation of physiological oscillation denoising	2
Special Section Guest Editorial: Thirty Years of Functional Near-Infrared Spectroscopy	2
Developing customized NIRS-EEG for infant sleep research: methodological considerations	2
DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging	2
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination	2
Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy	2
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	2
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	2
Expansion microscopy reveals neural circuit organization in genetic animal models	2
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	2
Arterial-wall origin and transient dynamics of flow- and vaso-motion activities in the awake mouse brain revealed by laser speckle contrast imaging	2