Neurophotonics

Article	Citations
Welcome New Members of the Neurophotonics Editorial Board!	93
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	69
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	64
The Ten Commandments of Everyday Leadership	46
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	42
Advances in computer-generated holography for targeted neuronal modulation	38
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	36
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	35
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	33
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	29
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	28
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	27
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	25
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	22
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	21
Correlating functional near-infrared spectroscopy with underlying cortical regions of 0-, 1-, and 2-year-olds using theoretical light propagation analysis	21
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	20
Shedding light on functional near-infrared spectroscopy and open science practices	20
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	20
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	20
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	19
Special Section Guest Editorial: Frontiers in Neurophotonics	19
Investigating developmental changes in scalp-to-cortex correspondence using diffuse optical tomography sensitivity in infancy	18
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	18
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	18

Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	17
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	17
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	17
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	17
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	17
Zika virus encephalitis causes transient reduction of functional cortical connectivity	16
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	16
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	15
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	14
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	14
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	14
Semiautomated analysis of an optical ATP indicator in neurons	13
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	13
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	12
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	12
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	12
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	12
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	12
2023 List of Reviewers	11
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	11
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	11
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	11
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	11
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	10
Introduction to the shared near infrared spectroscopy format	10
Precision of time-resolved near-infrared spectroscopy-based measurements of cerebral oxygenation in preterm infants	10
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	9
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	9
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	8
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	8
Diversity is our Strength	8
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	8
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	8
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	8
Consistency of children’s hemodynamic responses during spontaneous speech	8
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	8
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	8
Warriors of Science: Ukraine’s Academic Endeavors	8
Taste for discovery: a conversation with neuroscientist Serge Charpak	8
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	7
Fiber photometry-based investigation of brain function and dysfunction	7
Recent advances in bioluminescent probes for neurobiology	7
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	7
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	7
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	7
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	7
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	7
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	7
Visible-light optical coherence tomography and its applications	7
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	7

Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	6
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	6
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	6
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	6
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	6
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	6
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	6
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	6
Assaying activity-dependent arteriole and capillary responses in brain slices	6
Diffuse correlation spectroscopy: current status and future outlook	6
2024 List of Reviewers	6
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	6
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	6
Deep learning in fNIRS: a review	6
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	5
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	5
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	5
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	5
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	5
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	5
Multimode fiber endoscopes for computational brain imaging	5
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger	5
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	5
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	5
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Population imaging of internal state circuits relevant to psychiatric disease: a review	4
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	4
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
2022 List of Reviewers	4
Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy	4
Spatiotemporal patterns of spontaneous brain activity: a mini-review	4
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	4
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	4
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	4
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	4
Psychedelics and fNIRS neuroimaging: exploring new opportunities	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	4
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	4
Optical constraints on two-photon voltage imaging	4
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	4
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	4
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	4
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
Special Section Guest Editorial: Computational Approaches for Neuroimaging	4
Optimization of time domain diffuse correlation spectroscopy parameters for measuring brain blood flow	4
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	4
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	4
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	4
devfOLD: a toolbox for designing age-specific fNIRS channel placement	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	3
Seizure event detection using intravital two-photon calcium imaging data	3
Linking brain activity across scales with simultaneous opto- and electrophysiology	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	3
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	3
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	3
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Special Section Guest Editorial: Molecular Neurophotonics	3
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	3
Contractile apparatus in CNS capillary pericytes	3
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	3
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	3
Multifocal microscopy for functional imaging of neural systems	3
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	3
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Guiding functional near-infrared spectroscopy optode-layout design using individual (f)MRI data: effects on signal strength	2
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	2

Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	2
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	2
Motion artifact correction for resting-state neonatal functional near-infrared spectroscopy through adaptive estimation of physiological oscillation denoising	2
fNIRS-derived neurocognitive ratio as a biomarker for neuropsychiatric diseases	2
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	2
Addressing annotation and data scarcity when designing machine learning strategies for neurophotonics	2
Superconducting nanowire single-photon sensing of cerebral blood flow	2
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	2
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	2
Self-administered transcranial direct current stimulation treatment of knee osteoarthritis alters pain-related fNIRS connectivity networks	2
Expansion microscopy reveals neural circuit organization in genetic animal models	2
Transcranial photobiomodulation (808 nm) attenuates pentylenetetrazole-induced seizures by suppressing hippocampal neuroinflammation, astrogliosis, and microgliosis in peripubertal rats	2
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	2
Human brain tissue identification using coherent anti-Stokes Raman scattering spectroscopy and diffuse reflectance spectroscopy for deep brain stimulation surgery	2
Functional brain connectivity related to surgical skill dexterity in physical and virtual simulation environments (Erratum)	2
Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption	2
FiPhA: an open-source platform for fiber photometry analysis	2
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	2
Connecting the dots between cell populations, whole-brain activity, and behavior	2
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	2
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	2
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	2
Concurrent OCT and OCT angiography of retinal neurovascular degeneration in the 5XFAD Alzheimer’s disease mice	2
Emerging technologies toward the integration of multiple functionalities on non-planar implantable neurophotonics probes	2
Vertebrate behavioral thermoregulation: knowledge and future directions	2