Neurophotonics

Article	Citations
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	65
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	49
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	43
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	34
Toward dynamic, anisotropic, high-resolution, and functional measurement in the brain extracellular space	33
Encoding of self-initiated actions in axon terminals of the mesocortical pathway	33
Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy	29
Evaluation of compact pulsed lasers for two-photon microscopy using a simple method for measuring two-photon excitation efficiency	28
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	27
2021 List of Reviewers	27
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	22
Current opinions on the present and future use of functional near-infrared spectroscopy in psychiatry	22
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	22
Navigating neurophotonics, words of wisdom: an interview with Professor David Kleinfeld	21
Quantitative evaluation of biomechanical properties of optic nerve head by using acoustic radiation force optical coherence elastography	19
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	19
2022 List of Reviewers	18
The Ten Commandments of Everyday Leadership	18
Special Section Guest Editorial: Computational Approaches for Neuroimaging	16
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	16
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	16
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	15
Isotonic ion replacement can lower the threshold for selective infrared neural inhibition	15
Welcome New Members of the Neurophotonics Editorial Board!	15
Photonic neural probe enabled microendoscopes for light-sheet light-field computational fluorescence brain imaging	15

Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	14
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	14
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	14
iVR-fNIRS: studying brain functions in a fully immersive virtual environment	14
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	14
Engineering luminopsins with improved coupling efficiencies	13
Applications of near-infrared spectroscopy in neurocritical care	13
Design and validation of a mechanically flexible and ultra-lightweight high-density diffuse optical tomography system for functional neuroimaging of newborns	13
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	13
How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS?	12
Optical constraints on two-photon voltage imaging	11
Using near-infrared spectroscopy and a random forest regressor to estimate intracranial pressure	11
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination	11
Optical imaging and spectroscopy for the study of the human brain: status report	11
Fiberoptic array for multiple channel infrared neural stimulation of the brain	11
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	11
Developing customized NIRS-EEG for infant sleep research: methodological considerations	11
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	10
Review on data analysis methods for mesoscale neural imaging in vivo	10
DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging	10
Advances in computer-generated holography for targeted neuronal modulation	10
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	9
Recent advances in bioluminescent probes for neurobiology	9
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	9
Simple methodology to visualize whole-brain microvasculature in three dimensions	9
Multifocal microscopy for functional imaging of neural systems	9
Depth-targeted intracortical microstroke by two-photon photothrombosis in rodent brain	8
Upcoming Neurophotonics Status Report	8
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	8
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	8
Consistency of children’s hemodynamic responses during spontaneous speech	8
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	8
Advancing the path to in-vivo imaging in freely moving mice via multimode-multicore fiber based holographic endoscopy	8
Diversity is our Strength	8
Rebellion, curiosity, and perseverance: a conversation with Maria Angela Franceschini	7
Taste for discovery: a conversation with neuroscientist Serge Charpak	7
Warriors of Science: Ukraine’s Academic Endeavors	7
Psychedelics and fNIRS neuroimaging: exploring new opportunities	7
Comparing the segmentation of quantitative phase images of neurons using convolutional neural networks trained on simulated and augmented imagery	7
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	7
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	7
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	6
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	6
Two-dimensional electro-optical multiphoton microscopy	6
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	6
Comparison of short-channel separation and spatial domain filtering for removal of non-neural components in functional near-infrared spectroscopy signals	6
Toward peripheral nerve mechanical characterization using Brillouin imaging spectroscopy	6
Early changes in spatiotemporal dynamics of remapped circuits and global networks predict functional recovery after stroke in mice	6
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	6
Influence of oversimplifying the head anatomy on cerebral blood flow measurements with diffuse correlation spectroscopy	6

Low-cost, smartphone-based instant three-dimensional registration system for infant functional near-infrared spectroscopy applications	6
Model-based correction of rapid thermal confounds in fluorescence neuroimaging of targeted perturbation	6
Multisensory naturalistic decoding with high-density diffuse optical tomography	6
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	6
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	6
High throughput detection of capillary stalling events with Bessel beam two-photon microscopy	5
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	5
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	5
Can pain under anesthesia be measured? Pain-related brain function using functional near-infrared spectroscopy during knee surgery	5
Seizure event detection using intravital two-photon calcium imaging data	5
Diffuse correlation spectroscopy: current status and future outlook	5
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	5
Parallel factor analysis for multidimensional decomposition of functional near-infrared spectroscopy data	5
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	5
Shedding light on functional near-infrared spectroscopy and open science practices	5
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	5
Wavelength-swept spontaneous Raman spectroscopy system improves fiber-based collection efficiency for whole brain tissue classification	5
Correlating functional near-infrared spectroscopy with underlying cortical regions of 0-, 1-, and 2-year-olds using theoretical light propagation analysis	5
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	5
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	5
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	5
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	5
Multiphoton imaging of hippocampal neural circuits: techniques and biological insights into region-, cell-type-, and pathway-specific functions	4
Fiber photometry-based investigation of brain function and dysfunction	4
devfOLD: a toolbox for designing age-specific fNIRS channel placement	4
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	4
Comparison of functional activation responses from the auditory cortex derived using multi-distance frequency domain and continuous wave near-infrared spectroscopy	4
Assaying activity-dependent arteriole and capillary responses in brain slices	4
“There’s plenty of room at the bottom”: deep brain imaging with holographic endo-microscopy	4
Brain space image reconstruction of functional near-infrared spectroscopy using a Bayesian adaptive fused sparse overlapping group lasso model	4
Shining light on the noradrenergic system	4
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	4
Cerebral baseline optical and hemodynamic properties in pediatric population: a large cohort time-domain near-infrared spectroscopy study	4
Blood vessel tail artifacts suppression in optical coherence tomography angiography	4
Erratum: Improved accuracy of cerebral blood flow quantification in the presence of systemic physiology cross-talk using multi-layer Monte Carlo modeling	4
Fiber-based lactate recordings with fluorescence resonance energy transfer sensors by applying an magnetic resonance-informed correction of hemodynamic artifacts	4
Programmable scanning diffuse speckle contrast imaging of cerebral blood flow	4
Deep learning in fNIRS: a review	4
Disentangling the impact of motion artifact correction algorithms on functional near-infrared spectroscopy–based brain network analysis	4
High-precision neural stimulation through optoacoustic emitters	4
Influence of source–detector separation on diffuse correlation spectroscopy measurements of cerebral blood flow with a multilayered analytical model	4
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	4
Mapping multi-regional functional connectivity of astrocyte-neuronal networks during behaviors	3
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	3
Two-in-one system and behavior-specific brain synchrony during goal-free cooperative creation: an analytical approach combining automated behavioral classification and the event-related generalized li	3
Pulse train gating to improve signal generation for in vivo two-photon fluorescence microscopy	3
Chronic multiscale resolution of mouse brain networks using combined mesoscale cortical imaging and subcortical fiber photometry	3
Signal regression in frequency-domain diffuse optical tomography to remove superficial signal contamination	3
Group-level cortical functional connectivity patterns using fNIRS: assessing the effect of bilingualism in young infants	3
Functional near-infrared spectroscopy-based prefrontal cortex oxygenation during working memory tasks in sickle cell disease	3
Contractile apparatus in CNS capillary pericytes	3
Comparing different motion correction approaches for resting-state functional connectivity analysis with functional near-infrared spectroscopy data	3
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
Two-photon imaging of excitatory and inhibitory neural response to infrared neural stimulation	3
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	3
Pupil engineering for extended depth-of-field imaging in a fluorescence miniscope	3
Investigating developmental changes in scalp-to-cortex correspondence using diffuse optical tomography sensitivity in infancy	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Performance comparison of systemic activity correction in functional near-infrared spectroscopy for methods with and without short distance channels	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	3
Standardized 3D test object for multi-camera calibration during animal pose capture	3
Closed-loop experiments and brain machine interfaces with multiphoton microscopy	3
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
Illuminating the brain: an interview with Karl Deisseroth	3
Characterizing reproducibility of cerebral hemodynamic responses when applying short-channel regression in functional near-infrared spectroscopy	2
Special Section Guest Editorial: Frontiers in Neurophotonics	2
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	2
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	2
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	2
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	2
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	2
Special Section Guest Editorial: Molecular Neurophotonics	2
Guiding functional near-infrared spectroscopy optode-layout design using individual (f)MRI data: effects on signal strength	2
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	2
Understanding the nervous system: lessons from Frontiers in Neurophotonics	2
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	2
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	2

Customizable optode attachments to improve hair clearance timing and inclusiveness in functional near-infrared spectroscopy research	2
Short-separation regression incorporated diffuse optical tomography image reconstruction modeling for high-density functional near-infrared spectroscopy	2
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	2
Linking brain activity across scales with simultaneous opto- and electrophysiology	2
Imaging dendritic spines in the hippocampus of a living mouse by 3D-stimulated emission depletion microscopy	2
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	2
Seizure network characterization by functional connectivity mapping and manipulation	2
Agreement in cerebrovascular reactivity assessed with diffuse correlation spectroscopy across experimental paradigms improves with short separation regression	2
Special Section Guest Editorial: Open-source neurophotonic tools for neuroscience	2
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	2
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	2