Neurophotonics

Article	Citations
NIRS-KIT: a MATLAB toolbox for both resting-state and task fNIRS data analysis	105
Best practices for fNIRS publications	104
Quantitative comparison of correction techniques for removing systemic physiological signal in functional near-infrared spectroscopy studies	69
Optical imaging and spectroscopy for the study of the human brain: status report	63
Short-channel regression in functional near-infrared spectroscopy is more effective when considering heterogeneous scalp hemodynamics	48
Direct assessment of extracerebral signal contamination on optical measurements of cerebral blood flow, oxygenation, and metabolism	47
Analysis methods for measuring passive auditory fNIRS responses generated by a block-design paradigm	46
Deep learning in fNIRS: a review	41
Superconducting nanowire single-photon sensing of cerebral blood flow	33
Implantable photonic neural probes for light-sheet fluorescence brain imaging	32
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	32
Improved accuracy of cerebral blood flow quantification in the presence of systemic physiology cross-talk using multi-layer Monte Carlo modeling	31
High-sensitivity multispeckle diffuse correlation spectroscopy	28
Comparison of short-channel separation and spatial domain filtering for removal of non-neural components in functional near-infrared spectroscopy signals	27
Neurophotonic Tools for Microscopic Measurements and Manipulation: Status Report	27
Errata: Best practices for fNIRS publications	27
Continuous blood flow visualization with laser speckle contrast imaging during neurovascular surgery	26
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	22
Diffuse correlation spectroscopy: current status and future outlook	21
Evaluating a new generation of wearable high-density diffuse optical tomography technology via retinotopic mapping of the adult visual cortex	20
Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy	20
Overview of extracellular vesicle characterization techniques and introduction to combined reflectance and fluorescence confocal microscopy to distinguish extracellular vesicle subpopulations	19
Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality	18
Optimization of time domain diffuse correlation spectroscopy parameters for measuring brain blood flow	18
Design and validation of a mechanically flexible and ultra-lightweight high-density diffuse optical tomography system for functional neuroimaging of newborns	17

Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	16
Aberration correction in stimulated emission depletion microscopy to increase imaging depth in living brain tissue	16
Deep learning-based motion artifact removal in functional near-infrared spectroscopy	15
Reducing false discoveries in resting-state functional connectivity using short channel correction: an fNIRS study	15
Concurrent OCT and OCT angiography of retinal neurovascular degeneration in the 5XFAD Alzheimer’s disease mice	15
Group-level cortical functional connectivity patterns using fNIRS: assessing the effect of bilingualism in young infants	14
How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS?	14
Identifying optimal parameters for infrared neural stimulation in the peripheral nervous system	14
Using near-infrared spectroscopy and a random forest regressor to estimate intracranial pressure	14
Quantitative birefringence microscopy for imaging the structural integrity of CNS myelin following circumscribed cortical injury in the rhesus monkey	14
Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters	14
Polychromatic digital holographic microscopy: a quasicoherent-noise-free imaging technique to explore the connectivity of living neuronal networks	13
Current opinions on the present and future use of functional near-infrared spectroscopy in psychiatry	13
Transcranial photobiomodulation (808 nm) attenuates pentylenetetrazole-induced seizures by suppressing hippocampal neuroinflammation, astrogliosis, and microgliosis in peripubertal rats	13
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	13
Spatiotemporal patterns of spontaneous brain activity: a mini-review	13
Characterizing reproducibility of cerebral hemodynamic responses when applying short-channel regression in functional near-infrared spectroscopy	13
Using functional near-infrared spectroscopy to study the early developing brain: future directions and new challenges	12
Cranial window for longitudinal and multimodal imaging of the whole mouse cortex	11
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	11
Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra	11
Measuring neuronal activity with diffuse correlation spectroscopy: a theoretical investigation	11
devfOLD: a toolbox for designing age-specific fNIRS channel placement	11
Enhanced spatiotemporal resolution imaging of neuronal activity using joint electroencephalography and diffuse optical tomography	11
Performance comparison of systemic activity correction in functional near-infrared spectroscopy for methods with and without short distance channels	11
Systemic physiology augmented functional near-infrared spectroscopy hyperscanning: a first evaluation investigating entrainment of spontaneous activity of brain and body physiology between subjects	11
Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data	11
Immune–vascular mural cell interactions: consequences for immune cell trafficking, cerebral blood flow, and the blood–brain barrier	10
Simultaneous two-photon activation and imaging of neural activity based on spectral–temporal modulation of supercontinuum light	10
Photonics tools begin to clarify astrocyte calcium transients	9
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	9
Contractile apparatus in CNS capillary pericytes	9
Resting-state brain networks in neonatal hypoxic-ischemic brain damage: a functional near-infrared spectroscopy study	9
Task-related brain activity and functional connectivity in upper limb dystonia: a functional magnetic resonance imaging (fMRI) and functional near-infrared spectroscopy (fNIRS) study	9
Interferometric diffuse optics: recent advances and future outlook	9
Influence of source–detector separation on diffuse correlation spectroscopy measurements of cerebral blood flow with a multilayered analytical model	9
Using preregistration as a tool for transparent fNIRS study design	8
Monitoring the motor cortex hemodynamic response function in freely moving walking subjects: a time-domain fNIRS pilot study	8
Simple methodology to visualize whole-brain microvasculature in three dimensions	8
Using anatomically defined regions-of-interest to adjust for head-size and probe alignment in functional near-infrared spectroscopy	8
Advances in studying whole mouse brain vasculature using high-resolution 3D light microscopy imaging	8
Fiberoptic array for multiple channel infrared neural stimulation of the brain	8
Behavioral and physiological monitoring for awake neurovascular coupling experiments: a how-to guide	8
Investigating developmental changes in scalp-to-cortex correspondence using diffuse optical tomography sensitivity in infancy	8
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	7
Hybrid fiber optic-fMRI for multimodal cell-specific recording and manipulation of neural activity in rodents	7
Depth-targeted intracortical microstroke by two-photon photothrombosis in rodent brain	7
Infrared inhibition impacts on locally initiated and propagating action potentials and the downstream synaptic transmission	7
High-precision neural stimulation through optoacoustic emitters	7
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	7

Functional brain connectivity related to surgical skill dexterity in physical and virtual simulation environments	7
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	7
Advances in computer-generated holography for targeted neuronal modulation	7
Validation of the Openwater wearable optical system: cerebral hemodynamic monitoring during a breath-hold maneuver	6
Blood vessel tail artifacts suppression in optical coherence tomography angiography	6
Pupil engineering for extended depth-of-field imaging in a fluorescence miniscope	6
Chronic co-implantation of ultraflexible neural electrodes and a cranial window	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Multivariate Kalman filter regression of confounding physiological signals for real-time classification of fNIRS data	6
Regional analysis of cerebral hemodynamic changes during the head-up tilt test in Parkinson’s disease patients with orthostatic intolerance	6
Influence of oversimplifying the head anatomy on cerebral blood flow measurements with diffuse correlation spectroscopy	6
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	6
Optimizing a two-layer method for hybrid diffuse correlation spectroscopy and frequency-domain diffuse optical spectroscopy cerebral measurements in adults	6
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	6
Review of data processing of functional optical microscopy for neuroscience	6
Differential effects of photobiomodulation interval schedules on brain cytochrome c-oxidase and proto-oncogene expression	6
Applications of near-infrared spectroscopy in neurocritical care	6
Functional near-infrared spectroscopy in pediatric clinical research: Different pathophysiologies and promising clinical applications	6
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	5
Techniques for visualizing fibroblast-vessel interactions in the developing and adult CNS	5
Two-in-one system and behavior-specific brain synchrony during goal-free cooperative creation: an analytical approach combining automated behavioral classification and the event-related generalized li	5
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	5
Open-source statistical and data processing tools for wide-field optical imaging data in mice	5
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	5
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	5
Psychedelics and fNIRS neuroimaging: exploring new opportunities	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Improving laser standards for three-photon microscopy	5
fNIRS brain measures of ongoing nociception during surgical incisions under anesthesia	5
Deformable mirror-based axial scanning for two-photon mammalian brain imaging	5
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	5
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	4
Isotonic ion replacement can lower the threshold for selective infrared neural inhibition	4
Reinforced thinned-skull window for repeated imaging of the neonatal mouse brain	4
Real-time tracking of brain oxygen gradients and blood flow during functional activation	4
Revealing the spatiotemporal requirements for accurate subject identification with resting-state functional connectivity: a simultaneous fNIRS-fMRI study	4
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	4
Correction of global physiology in resting-state functional near-infrared spectroscopy	4
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	4
Functional neuroimaging of sensorimotor cortices in postmenopausal women with type II diabetes	4
Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy	4
MOCA: a systematic toolbox for designing and assessing modular functional near-infrared brain imaging probes	4
Toolbox for studying neurovascular coupling in vivo, with a focus on vascular activity and calcium dynamics in astrocytes	4
FDISCO+: a clearing method for robust fluorescence preservation of cleared samples	4
Comparison of cerebral metabolic rate of oxygen, blood flow, and bispectral index under general anesthesia	4
In vivo detection of murine glioblastoma through Raman and reflectance fiber-probe spectroscopies	4
Guiding functional near-infrared spectroscopy optode-layout design using individual (f)MRI data: effects on signal strength	4
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	4
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	4
Introduction to the shared near infrared spectroscopy format	4
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	4
Semiautomated analysis of an optical ATP indicator in neurons	4
Cerebrovascular reactivity measured in awake mice using diffuse correlation spectroscopy	4
High-speed quantitative optical imaging of absolute metabolism in the rat cortex	4
Signal regression in frequency-domain diffuse optical tomography to remove superficial signal contamination	4
Imaging dendritic spines in the hippocampus of a living mouse by 3D-stimulated emission depletion microscopy	3
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
Parallel factor analysis for multidimensional decomposition of functional near-infrared spectroscopy data	3
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	3
Photonic neural probe enabled microendoscopes for light-sheet light-field computational fluorescence brain imaging	3
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	3
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	3
In vivo voltage-sensitive dye imaging of mouse cortical activity with mesoscopic optical tomography	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Fiber-based lactate recordings with fluorescence resonance energy transfer sensors by applying an magnetic resonance-informed correction of hemodynamic artifacts	3
Seizure event detection using intravital two-photon calcium imaging data	3
Can pain under anesthesia be measured? Pain-related brain function using functional near-infrared spectroscopy during knee surgery	3
Review on data analysis methods for mesoscale neural imaging in vivo	3
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	3
Evaluation of residual cognition in patients with disorders of consciousness based on functional near-infrared spectroscopy	3
Differentiation of primary central nervous system lymphoma from glioblastoma using optical coherence tomography based on attention ResNet	3
Predicting poststroke dyskinesia with resting-state functional connectivity in the motor network	3
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	3
High-speed optical coherence tomography angiography for the measurement of stimulus-induced retrograde vasodilation of cerebral pial arteries in awake mice	3
Shedding light on functional near-infrared spectroscopy and open science practices	3
Correlating functional near-infrared spectroscopy with underlying cortical regions of 0-, 1-, and 2-year-olds using theoretical light propagation analysis	3
Comparing synthetic refocusing to deconvolution for the extraction of neuronal calcium transients from light fields	3
Special Section Guest Editorial: Thirty Years of Functional Near-Infrared Spectroscopy	3
Longitudinal in vivo imaging of perineuronal nets	3
Statistical approaches to temporal and spatial autocorrelation in resting-state functional connectivity in mice measured with optical intrinsic signal imaging	3

Connecting the dots between cell populations, whole-brain activity, and behavior	3
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	2
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	2
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	2
High throughput detection of capillary stalling events with Bessel beam two-photon microscopy	2
Toward an integrative neurovascular framework for studying brain networks	2
Model-based correction of rapid thermal confounds in fluorescence neuroimaging of targeted perturbation	2
Low throughput screening in neuroscience: using light to study central synapses one at a time	2
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	2
Resolution-enhanced multi-core fiber imaging learned on a digital twin for cancer diagnosis	2
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	2
Interpolated functional manifold for functional near-infrared spectroscopy analysis at group level	2
Multiphoton imaging of hippocampal neural circuits: techniques and biological insights into region-, cell-type-, and pathway-specific functions	2
Comparison of functional activation responses from the auditory cortex derived using multi-distance frequency domain and continuous wave near-infrared spectroscopy	2
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	2
Precision of time-resolved near-infrared spectroscopy-based measurements of cerebral oxygenation in preterm infants	2
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	2
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	2
Shining light on the noradrenergic system	2
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	2
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	2
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	2
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	2
Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	2
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	2
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	2
Tools and tutorial on practical ray tracing for microscopy	2
Toward peripheral nerve mechanical characterization using Brillouin imaging spectroscopy	2
Computational optics for high-throughput imaging of neural activity	2
Toward dynamic, anisotropic, high-resolution, and functional measurement in the brain extracellular space	2