Neurophotonics

Article	Citations
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	131
The Ten Commandments of Everyday Leadership	120
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	70
Advances in computer-generated holography for targeted neuronal modulation	62
Fluorescent sensors for intracellular signaling in the brain: imaging neurons, glia, and vascular cells	51
Phantom for standardization in functional near-infrared spectroscopy, part 1: implementation and usage	50
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	46
Transport in the brain studied with in vivo two-photon microscopy: the impact of spatial and temporal resolution	42
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	37
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	30
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	28
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	27
Review of cocaine-induced brain vascular and cellular function changes measured in vivo with optical imaging	27
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	26
Rapid axially scanned and de-scanned line-scan confocal microscopy with a tunable acoustic gradient index of refraction lens for high-speed volumetric in vivo imaging	25
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	24
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	24
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	24
Voltage imaging in zebrafish using high-speed light-sheet microscopy	23
Shedding light on functional near-infrared spectroscopy and open science practices	22
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	21
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	20
Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina	18
Special Section Guest Editorial: Frontiers in Neurophotonics	17
Investigating the effect of channel pruning on functional near-infrared spectroscopy data collected from children aged 5 to 24 months	17

Two-point calibration protocol for the Förster Resonance Energy Transfer indicator Pyronic in neurons	17
Cerebral blood flow and energy demand: imaging insights into neurovascular function	17
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	17
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	16
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	16
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	16
Mapping functional connectivity in the pigeon brain with wide-field optical imaging	15
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	15
Technical development of two-photon optogenetic stimulation and its potential application to brain–machine interfaces	15
Improving interference control without conflict exposure: prefrontal fNIRS-decoded neurofeedback training	15
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	15
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	14
Zika virus encephalitis causes transient reduction of functional cortical connectivity	14
Curiosity as compass: a conversation with David Attwell	14
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	14
Maternal anxiety shapes prediction error responses in the infant brain	14
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	14
Semiautomated analysis of an optical ATP indicator in neurons	13
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	13
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	13
Cellular-resolution OCT reveals layer-specific retinal mosaics and ganglion cell degeneration in mouse retina in vivo	11
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	11
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	11
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	11
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	11
Secret ingredients that can boost the flavor of your ideas	11
Voltage imaging as a window into neural computation	11
Real-time monitoring of wavelet-based neurovascular coupling in neonates with hypoxic ischemic encephalopathy using an hourly time window	11
Emerging panorama of functional near-infrared spectroscopy in Latin America	11
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	11
On curiosity, neuroscience, and building interdisciplinary bridges: a conversation with Dr. Anna Roe	10
Depth-sensitive assessment of cerebral blood flow and low-frequency oscillations after traumatic brain injury in mice using time-domain diffuse correlation spectroscopy	10
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	10
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	10
2023 List of Reviewers	10
Tonotopic organization in the basal region of the ventromedial nucleus of the thalamus revealed by fiber photometry recording	9
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	9
Introduction to the Neurophotonics Special Issue “Imaging Brain Metabolism and Neuroenergetics”	9
Warriors of Science: Ukraine’s Academic Endeavors	9
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	9
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	9
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	9
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	9
Characterizing vascular function in mouse models of Alzheimer’s disease, atherosclerosis, and mixed Alzheimer’s and atherosclerosis	9
Tone disruptions in Mandarin post-stroke aphasia: an fNIRS study on Broca’s area using the auditory oddball paradigm	9
Introduction to the shared near infrared spectroscopy format	9
Taste for discovery: a conversation with neuroscientist Serge Charpak	9
Recent advances in bioluminescent probes for neurobiology	8
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	8
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	8

Fiber photometry-based investigation of brain function and dysfunction	8
Brain imaging across scales: an interview with Prof. Mark Schnitzer	8
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	8
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	8
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	8
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	7
Quantitative analysis of lipofuscin in neurodegenerative diseases using serial sectioning two-photon microscopy and fluorescence lifetime imaging microscopy	7
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	7
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	7
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	7
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	7
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	7
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	7
Diffuse correlation spectroscopy: current status and future outlook	7
2024 List of Reviewers	7
Combining membrane potential and calcium imaging in brain slices using the voltage-sensitive dye ElectroFluor630 and the calcium indicator Calbryte520	7
Visible-light optical coherence tomography and its applications	7
Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	7
Deep learning in fNIRS: a review	7
Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals	7
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	6
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	6
Reproducibility of a time-resolved NIRS, multidistance diffuse correlation spectroscopy system: towards noninvasive longitudinal neuromonitoring	6
Open-source modular field-programmable gate array system for two-photon mesoscope enabling multiarea, multidepth neural activity recording and lifetime imaging	6
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Cellular multipoint adaptive technology for two-photon mesoscope	6
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	6
Brain network evolution in late preterm to term infants: a near-infrared spectroscopy imaging study	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	6
Data-driven wavelet coherence approach to assess neurovascular coupling in neonatal hypoxic–ischemic encephalopathy	6
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	6
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	6
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	6
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	6
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	6
NIRS frequency analysis to evaluate cerebrovascular reactivity after acute brain injury	6
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	6
Multimode fiber endoscopes for computational brain imaging	6
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	5
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	5
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	5
2025 List of Reviewers	5
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	5
Population imaging of internal state circuits relevant to psychiatric disease: a review	5
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	5
Special Section Guest Editorial: Computational Approaches for Neuroimaging	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	5
Improving neuroimaging headgear placement robustness using facial-landmark-guided augmented reality	5
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	5
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	5
Significant interactions in infant operculum regions when exposed to a bilingual environment: a resting-state fNIRS study	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	5
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	5
Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	4
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	4
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	4
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	4
Seizure event detection using intravital two-photon calcium imaging data	4
Multifocal microscopy for functional imaging of neural systems	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	4
Functional specialization for language processing in inferior frontal regions during early childhood: evidence from functional near-infrared spectroscopy individual functional channels of interest app	4
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	4
A low-cost FPGA-based approach for pile-up corrected high-speed in vivo FLIM imaging	4
Inducing and monitoring photothrombotic stroke in anesthetic neuroprotection-free mice using functional photoacoustic microscopy	4
Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
High-density multidistance fNIRS enhances detection of brain activity during a word-color Stroop task	4
2022 List of Reviewers	4
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
Linking brain activation to clinical outcomes: an fNIRS study in cochlear implant users and normal hearing individuals	4
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	4

Shape of the hemodynamic response function in deaf infants eligible for cochlear implantation	4
Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli	4
Psychedelics and fNIRS neuroimaging: exploring new opportunities	4
Optical constraints on two-photon voltage imaging	4
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	4
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Introduction to the Special Issue “Understanding Brain Disease with Live Imaging”	3
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
FiPhA: an open-source platform for fiber photometry analysis	3
How to design real-world functional near-infrared spectroscopy studies: a primer	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
Desensitization of opsin responses during all-optical interrogation depends on imaging parameters	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
Comparison of diffuse correlation spectroscopy, interferometric diffusing wave spectroscopy, and speckle contrast optical spectroscopy for blood flow monitoring	3
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	3
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Linking brain activity across scales with simultaneous opto- and electrophysiology	3
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	3
Stimulation intensities influence the effects of spinal cord stimulation in disorders of consciousness: an fNIRS study	3
Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice	3
Special Section Guest Editorial: Molecular Neurophotonics	3
Diurnal differences in cerebral microvascular blood flow and oxygen delivery across brain regions in awake mice	3
Expansion microscopy reveals neural circuit organization in genetic animal models	3
Illuminating neurodegeneration: a future perspective on near-infrared spectroscopy in dementia research	2
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination	2
How much do time-domain functional near-infrared spectroscopy (fNIRS) moments improve estimation of brain activity over traditional fNIRS?	2
Robust photogrammetric scalp morphology estimation for functional optical neuroimaging	2
Vertebrate behavioral thermoregulation: knowledge and future directions	2
Anisotropic light propagation in human brain white matter	2
fNIRS in global child health research: insights from failure mode and effects analysis on a longitudinal project in Bangladesh	2
Cerebrovascular reactivity to carbon dioxide tension in newborns: data from combined time-resolved near-infrared spectroscopy and diffuse correlation spectroscopy	2
Self-administered transcranial direct current stimulation treatment of knee osteoarthritis alters pain-related fNIRS connectivity networks	2
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	2
DL-QC-fNIRS: a deep learning tool for automated quality control in functional near-infrared spectroscopy signals	2
Millimetric scale two-photon Bessel-Gauss beam light sheet microscopy with three-axis isotropic resolution using an axicon lens	2
In vivo two-photon microscopy for studies of neurovascular coupling in rodents: a beginner’s guide	2
Photon transport through the entire adult human head	2
Engineering luminopsins with improved coupling efficiencies	2
Depth-resolved fiber photometry of amyloid plaque signals in freely behaving Alzheimer’s disease mice	2
Depth-sensitive cerebral blood flow and low-frequency oscillations for consciousness assessment using time-domain diffuse correlation spectroscopy	2
DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging	2
Emerging technologies toward the integration of multiple functionalities on non-planar implantable neurophotonics probes	2
Arterial-wall origin and transient dynamics of flow- and vaso-motion activities in the awake mouse brain revealed by laser speckle contrast imaging	2
Sensitive and specific fNIRS-based approach for awareness detection in disorders of consciousness: proof of principle in healthy adults	2
Motion artifact correction for resting-state neonatal functional near-infrared spectroscopy through adaptive estimation of physiological oscillation denoising	2
Special Section Guest Editorial: Thirty Years of Functional Near-Infrared Spectroscopy	2
Rebellion, curiosity, and perseverance: a conversation with Maria Angela Franceschini	2
Developing customized NIRS-EEG for infant sleep research: methodological considerations	2
Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase	2
Evaluation of compact pulsed lasers for two-photon microscopy using a simple method for measuring two-photon excitation efficiency	2
HRfunc: a tool for modeling hemodynamic response variability in fNIRS	2
Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults	2
Addressing annotation and data scarcity when designing machine learning strategies for neurophotonics	2
Brain-wide 3D neuron detection and mapping with deep learning	2
Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption	2
Human brain tissue identification using coherent anti-Stokes Raman scattering spectroscopy and diffuse reflectance spectroscopy for deep brain stimulation surgery	2
Comparative validation of speckle contrast optical spectroscopy against diffuse correlation spectroscopy for monitoring human cerebral blood flow	2