Neurophotonics

Article	Citations
Taking the lid off ambitions for optical imaging of the human brain: a conversation with Clare Elwell	128
The Ten Commandments of Everyday Leadership	112
Special Section Guest Editorial: Imaging Neuroimmune, Neuroglial, and Neurovascular Interfaces	67
Advances in computer-generated holography for targeted neuronal modulation	61
Phantom for standardization in functional near-infrared spectroscopy, part 1: implementation and usage	49
Fluorescent sensors for intracellular signaling in the brain: imaging neurons, glia, and vascular cells	49
Evaluation of cerebral microcirculation in a mouse model of systemic inflammation	44
Observation of cortical state–based learning in infants in a functional near-infrared spectroscopy paradigm	37
Transport in the brain studied with in vivo two-photon microscopy: the impact of spatial and temporal resolution	36
Rapid axially scanned and de-scanned line-scan confocal microscopy with a tunable acoustic gradient index of refraction lens for high-speed volumetric in vivo imaging	30
Spiral laser scanning photoacoustic microscopy for functional brain imaging in rats	28
Review of cocaine-induced brain vascular and cellular function changes measured in vivo with optical imaging	27
Early screening model for mild cognitive impairment based on resting-state functional connectivity: a functional near-infrared spectroscopy study	26
Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study	26
Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy–based connectivity: a pilot study	24
Voltage imaging in zebrafish using high-speed light-sheet microscopy	24
Portable six-channel laser speckle system for simultaneous measurement of cerebral blood flow and volume with potential applications in characterization of brain injury	24
Shedding light on functional near-infrared spectroscopy and open science practices	23
Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults	22
Dynamic infrared imaging of cerebrospinal fluid tracer influx into the brain	22
Systematic review of fNIRS studies reveals inconsistent chromophore data reporting practices	21
Altered functional connectivity after pilocarpine-induced seizures revealed by intrinsic optical signals imaging in awake mice	20
Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study	19
Investigating the effect of channel pruning on functional near-infrared spectroscopy data collected from children aged 5 to 24 months	18
Two-point calibration protocol for the Förster Resonance Energy Transfer indicator Pyronic in neurons	17

Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones	17
Special Section Guest Editorial: Frontiers in Neurophotonics	17
Combined optical coherence tomography and electroretinography system for imaging neurovascular coupling in the human retina	17
Cerebral blood flow and energy demand: imaging insights into neurovascular function	16
Special Section Guest Editorial: Hybrid Photonic/X Neurointerfaces	16
Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals	16
Implantable photonic nano-modulators open perspectives for advanced optical interfaces with deep brain areas	15
Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo	15
Technical development of two-photon optogenetic stimulation and its potential application to brain–machine interfaces	15
Maternal anxiety shapes prediction error responses in the infant brain	15
Improving interference control without conflict exposure: prefrontal fNIRS-decoded neurofeedback training	15
In vivo volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography	15
Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy	15
Mapping functional connectivity in the pigeon brain with wide-field optical imaging	14
Quantitative simulation of near-infrared light treatment for Alzheimer’s disease using patient-individualized optical-parametric phantoms	14
ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging	14
Zika virus encephalitis causes transient reduction of functional cortical connectivity	14
Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach	14
Semiautomated analysis of an optical ATP indicator in neurons	13
Acute hypoxia elicits prefrontal oxygenation asymmetry in young adults	13
Imaging of post-synaptic membrane trafficking in neuronal dendrites: progress, limitations, and new developments	13
Unbiased analysis of mouse brain endothelial networks from two- or three-dimensional fluorescence images	12
Secret ingredients that can boost the flavor of your ideas	11
Emerging panorama of functional near-infrared spectroscopy in Latin America	11
Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity	11
Cellular-resolution OCT reveals layer-specific retinal mosaics and ganglion cell degeneration in mouse retina in vivo	11
Real-time monitoring of wavelet-based neurovascular coupling in neonates with hypoxic ischemic encephalopathy using an hourly time window	11
Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice	11
Voltage imaging as a window into neural computation	10
Depth-sensitive assessment of cerebral blood flow and low-frequency oscillations after traumatic brain injury in mice using time-domain diffuse correlation spectroscopy	10
On curiosity, neuroscience, and building interdisciplinary bridges: a conversation with Dr. Anna Roe	10
Chasing cortical behavior: designing multiphoton microscopes for imaging neuronal populations in freely moving rodents	10
Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo	10
2023 List of Reviewers	10
All-optical observation on activity-dependent nanoscale dynamics of myelinated axons	10
Reproducibility of infant fNIRS studies: a meta-analytic approach (Erratum)	10
Tonotopic organization in the basal region of the ventromedial nucleus of the thalamus revealed by fiber photometry recording	9
Pulsatile microvascular cerebral blood flow waveforms change with intracranial compliance and age	9
Light, questions, probes: Valentina Emiliani on combining disciplines for neurophotonics	9
Tone disruptions in Mandarin post-stroke aphasia: an fNIRS study on Broca’s area using the auditory oddball paradigm	9
Characterizing vascular function in mouse models of Alzheimer’s disease, atherosclerosis, and mixed Alzheimer’s and atherosclerosis	9
Machines, mathematics, and modules: the potential to provide real-time metrics for pain under anesthesia	9
Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation in vivo	9
Introduction to the shared near infrared spectroscopy format	9
Optical attenuation coefficient decorrelation-based optical coherence tomography angiography for microvascular evaluation of Alzheimer’s disease on mice	9
Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media	8
Warriors of Science: Ukraine’s Academic Endeavors	8
Brain imaging across scales: an interview with Prof. Mark Schnitzer	8
Erratum: Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	8
Visible-light optical coherence tomography and its applications	8

Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging	8
Introduction to the Neurophotonics Special Issue “Imaging Brain Metabolism and Neuroenergetics”	8
Taste for discovery: a conversation with neuroscientist Serge Charpak	8
Diffuse correlation spectroscopy: current status and future outlook	8
Microprisms enable enhanced throughput and resolution for longitudinal tracking of neuronal ensembles in deep brain structures	8
Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain	7
2024 List of Reviewers	7
Neurophotonics beyond the surface: unmasking the brain’s complexity exploiting optical scattering	7
Quantitative analysis of lipofuscin in neurodegenerative diseases using serial sectioning two-photon microscopy and fluorescence lifetime imaging microscopy	7
GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals	7
Recent advances in bioluminescent probes for neurobiology	7
How the heterogeneity of the severely injured brain affects hybrid diffuse optical signals: case examples and guidelines	7
Fiber photometry-based investigation of brain function and dysfunction	7
DDeep3M+: adaptive enhancement powered weakly supervised learning for neuron segmentation	7
Deep learning in fNIRS: a review	7
Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery	7
Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults	7
Wide-field fluorescence navigation system for efficient miniature multiphoton imaging in freely behaving animals	7
Zebrafish brain atlases: a collective effort for a tiny vertebrate brain	7
Recent advances and challenges in the use of CRISPR/Cas9 genome editing for understanding neuronal cell biology	6
Brain network evolution in late preterm to term infants: a near-infrared spectroscopy imaging study	6
Assaying activity-dependent arteriole and capillary responses in brain slices	6
Computer vision–guided open-source active commutator for neural imaging in freely behaving animals	6
NIRS frequency analysis to evaluate cerebrovascular reactivity after acute brain injury	6
Investigation of functional near-infrared spectroscopy signal quality and development of the hemodynamic phase correlation signal	6
Reproducibility of a time-resolved NIRS, multidistance diffuse correlation spectroscopy system: towards noninvasive longitudinal neuromonitoring	6
Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording	6
Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease	6
Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications	6
Cellular multipoint adaptive technology for two-photon mesoscope	6
In vivo characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography	6
Repeated transcranial photobiomodulation improves working memory of healthy older adults: behavioral outcomes of poststimulation including a three-week follow-up	6
Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers	6
Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain	6
Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice	6
Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension	6
Multimode fiber endoscopes for computational brain imaging	6
Real-time tracking of brain oxygen gradients and blood flow during functional activation	5
Distinguishing motion artifacts during optical fiber-based in-vivo hemodynamics recordings from brain regions of freely moving rodents	5
Open-source modular field-programmable gate array system for two-photon mesoscope enabling multiarea, multidepth neural activity recording and lifetime imaging	5
Cerebrovascular impedance estimation with near-infrared and diffuse correlation spectroscopy	5
Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory	5
Conceptual framework for neuronal ensemble identification and manipulation related to behavior using calcium imaging	5
Improving neuroimaging headgear placement robustness using facial-landmark-guided augmented reality	5
Significant interactions in infant operculum regions when exposed to a bilingual environment: a resting-state fNIRS study	5
Intrinsic, widefield optical imaging of hemodynamics in rodent models of Alzheimer’s disease and neurological injury	5
Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice	5
Antibody-based in vivo leukocyte label for two-photon brain imaging in mice	5
Changes in functional neuroimaging measures as novices gain proficiency on the fundamentals of laparoscopic surgery suturing task	5
Low-cost physiology and behavioral monitor for intravital imaging in small mammals	5
It takes two (seconds): decreasing encoding time for two-choice functional near-infrared spectroscopy brain–computer interface communication	5
Population imaging of internal state circuits relevant to psychiatric disease: a review	5
2025 List of Reviewers	5
Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature	5
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll	5
Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain	5
Adaptive optics, microscopy, and beyond: an interview with Professor Na Ji	5
Feasibility study of functional near-infrared spectroscopy in the ventral visual pathway for real-life applications	5
Parkinson’s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: a functional near-infrar	5
Co-localized optode-electrode design for multimodal functional near infrared spectroscopy and electroencephalography	5
Modulation of neuronal dynamics by sustained and activity-dependent continuous-wave near-infrared laser stimulation	5
BioLuminescent OptoGenetics in the choroid plexus: integrated opto- and chemogenetic control in vivo	4
Inducing and monitoring photothrombotic stroke in anesthetic neuroprotection-free mice using functional photoacoustic microscopy	4
Multifocal microscopy for functional imaging of neural systems	4
Building bridges: simultaneous multimodal neuroimaging approaches for exploring the organization of brain networks	4
Polarization optical coherence tomography optoretinography: verifying light-induced photoreceptor outer segment shrinkage and subretinal space expansion	4
Automatic and label-free detection of meningioma in dura mater using the combination of multiphoton microscopy and image analysis	4
Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches	4
The fNIRS glossary project: a consensus-based resource for functional near-infrared spectroscopy terminology	4
Cortical functional connectivity and topology based on complex network graph theory analysis during acute pain stimuli	4
Acquisition time for functional near-infrared spectroscopy resting-state functional connectivity in assessing autism	4
Effects of red blood cell transfusion on cerebral hemodynamics of preterm neonates	4
Functional specialization for language processing in inferior frontal regions during early childhood: evidence from functional near-infrared spectroscopy individual functional channels of interest app	4
Optical constraints on two-photon voltage imaging	4
High-density multidistance fNIRS enhances detection of brain activity during a word-color Stroop task	4
Potential of plasmonics and nanoscale light–matter interactions for the next generation of optical neural interfaces	4
Linking brain activation to clinical outcomes: an fNIRS study in cochlear implant users and normal hearing individuals	4
Method for optimizing imaging parameters to record neuronal and cellular activity at depth with bioluminescence	4
Characterizing the blood–brain barrier and gut barrier with super-resolution imaging: opportunities and challenges	4
Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model	4

Study of the brain function characteristics in children with cerebral palsy during walking using functional near-infrared spectroscopy	4
2022 List of Reviewers	4
Special Section Guest Editorial: Computational Approaches for Neuroimaging	4
HyperOptoNet: a MATLAB-based toolbox for inter-brain neuronal synchrony analysis using fNIRS hyperscanning	4
Psychedelics and fNIRS neuroimaging: exploring new opportunities	4
Brain-wide 3D neuron detection and mapping with deep learning	3
Ex vivo capillary-parenchymal arteriole approach to study brain pericyte physiology	3
Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction	3
Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice	3
FiPhA: an open-source platform for fiber photometry analysis	3
Enhancing diffuse correlation spectroscopy pulsatile cerebral blood flow signal with near-infrared spectroscopy photoplethysmography	3
Comparison of diffuse correlation spectroscopy, interferometric diffusing wave spectroscopy, and speckle contrast optical spectroscopy for blood flow monitoring	3
Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geo	3
How to design real-world functional near-infrared spectroscopy studies: a primer	3
Seizure event detection using intravital two-photon calcium imaging data	3
Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?	3
Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex	3
Expansion microscopy reveals neural circuit organization in genetic animal models	3
Reproducibility of infant fNIRS studies: a meta-analytic approach	3
Diurnal differences in cerebral microvascular blood flow and oxygen delivery across brain regions in awake mice	3
Special Section Guest Editorial: Molecular Neurophotonics	3
Introduction to the Special Issue “Understanding Brain Disease with Live Imaging”	3
Shape of the hemodynamic response function in deaf infants eligible for cochlear implantation	3
Enhanced synaptic protein visualization by multicolor super-resolution expansion microscopy	3
Capturing a rising star: the emerging role of astrocytes in neural circuit wiring and plasticity–lessons from the visual system	3
Stimulation intensities influence the effects of spinal cord stimulation in disorders of consciousness: an fNIRS study	3
Transcranial optical monitoring for detecting intracranial pressure alterations in children with benign external hydrocephalus: a proof-of-concept study	3
DL-QC-fNIRS: a deep learning tool for automated quality control in functional near-infrared spectroscopy signals	3
Cerebral blood flow monitoring using a deep learning implementation of the two-layer diffuse correlation spectroscopy analytical model with a 512 × 512 SPAD array	3
Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective	3
Fiber-based in vivo imaging: unveiling avenues for exploring mechanisms of synaptic plasticity and neuronal adaptations underlying behavior	3
Desensitization of opsin responses during all-optical interrogation depends on imaging parameters	3
Obtaining artifact-corrected signals in fiber photometry via isosbestic signals, robust regression, and dF/F calculations	3
NiReject: toward automated bad channel detection in functional near-infrared spectroscopy	3
A low-cost FPGA-based approach for pile-up corrected high-speed in vivo FLIM imaging	3
Linking brain activity across scales with simultaneous opto- and electrophysiology	3