Applications in Plant Sciences

Papers
(The TQCC of Applications in Plant Sciences is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
62
mvh: An R tool to assemble and organize virtual herbaria from openly available specimen images45
Issue Information45
Identifying cryptic fern gametophytes using DNA barcoding: A review36
Analysis of plant metabolomics data using identification‐free approaches30
25
Issue Information24
Looking to the past to inform the future: What eDNA from herbarium specimens can tell us about plant–animal interactions23
Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies21
Harnessing aquatic plant growth forms to apply European nutrient‐enrichment bioindicators to Canadian waters21
Calceolariaceae809: A bait set for targeted sequencing of nuclear loci19
Infrared spectroscopy for ploidy estimation: An example in two species of Veronica using fresh and herbarium specimens19
A unified framework to investigate and interpret hybrid and allopolyploid biodiversity across biological scales18
Truly the best of both worlds: Merging lineage‐specific and universal probe kits to maximize phylogenomic inference17
Ancient DNA extraction methods for herbarium specimens: When is it worth the effort?17
Optimizing efficient PCR‐amplifiable DNA extraction from herbarium specimens17
A roadmap of phylogenomic methods for studying polyploid plant genera16
From theory to practice: New innovations and their application in conservation biology16
Use of electrolyte leakage to assess floral damage after freezing15
RootBot: High‐throughput root stress phenotyping robot15
A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae14
Data‐driven guidelines for phylogenomic analyses using SNP data13
Ethanol preservation and pretreatments facilitate quality DNA extractions in recalcitrant plant species12
Capturing and managing genetic diversity in ex situ collections of threatened tropical trees: A case study in Karomia gigas11
hybpiper‐nf and paragone‐nf: Containerization and additional options for target capture assembly and paralog resolution11
Simulating pollen flow and field sampling constraints helps revise seed sampling recommendations for conserving genetic diversity11
Issue Information11
Issue Information11
10
10
Issue Information10
Making sense of complexity: Advances in bioinformatics for plant biology9
Issue Information9
Seed dormancy and germination of the endangered exceptional Hawaiian lobelioid Brighamia rockii8
Algae to angiosperms: Autofluorescence for rapid visualization of plant anatomy among diverse taxa8
Single‐nucleotide polymorphisms that uniquely identify cultivars of avocado (Persea americana)7
Step‐by‐step protocol for the isolation and transient transformation of hornwort protoplasts7
Stable isotope mixing models demonstrate the role of an invasive plant in wetland songbird food webs7
Correction to Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes7
The best of both worlds: Combining lineage‐specific and universal bait sets in target‐enrichment hybridization reactions7
7
A protocol for the generation of Arachis hypogaea composite plants: A valuable tool for the functional study of mycorrhizal symbiosis7
An optimized RNA extraction method for diverse leaves of Hawaiian Metrosideros, a hypervariable tree species complex6
The ecology and physiology of fern gametophytes: A methodological synthesis6
Calculation of the ovule number in the genus Salix: A method for taxa differentiation6
Evaluation of floral volatile patterns in the genus Narcissus using gas chromatography–coupled ion mobility spectrometry6
Advancing the science and practice of rare plant conservation with the Center for Plant Conservation Reintroduction Database6
Supporting long‐term sustainability of ex situ collections using a pedigree‐based population management approach5
Does sorting by color using visible and high‐energy violet light improve classification of taxa in honey bee pollen pellets?5
Charting the course for new discoveries in polyploid lineages5
Photographic analysis of field‐monitored fern gametophyte development and response to environmental stress5
Conservation Action Tracker: A tool to identify and monitor conservation actions for tree species5
Efficient imaging and computer vision detection of two cell shapes in young cotton fibers5
A dormant resource for genome size estimation in ferns: C‐value inference of the Ophioglossaceae using herbarium specimen spores5
An open‐source LED lamp for use with the LI‐6800 photosynthesis system5
A simple and cost‐effective method for studying anoxia tolerance in plants5
Polyploidy and the evolution of phenotypic integration: Network analysis reveals relationships among anatomy, morphology, and physiology5
Bringing genomics to the field: An integrative approach to seed sourcing for forest restoration5
Optimizing the lysis step in CTAB DNA extractions of silica‐dried and herbarium leaf tissues4
Variant calling in polyploids for population and quantitative genetics4
Issue Information4
Issue Information4
4
Orchid fruit and root movement analyzed using 2D photographs and a bioinformatics pipeline for processing sequential 3D scans4
Tailoring convolutional neural networks for custom botanical data4
4
A comprehensive illustrated protocol for clearing, mounting, and imaging leaf venation networks4
A metabarcoding protocol targeting two DNA regions to analyze root‐associated fungal communities in ferns and lycophytes4
Hijacking a rapid and scalable metagenomic method reveals subgenome dynamics and evolution in polyploid plants4
Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics4
Building capacity in the conservation of exceptional plant species4
Acknowledgment of Reviewers4
0.24977707862854