Biomedical Optics Express

Papers
(The TQCC of Biomedical Optics Express is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-07-01 to 2024-07-01.)
ArticleCitations
Label-free plasmonic immunosensor for cortisol detection in a D-shaped optical fiber89
Deep learning-based cell identification and disease diagnosis using spatio-temporal cellular dynamics in compact digital holographic microscopy63
Technical considerations in the Verasonics research ultrasound platform for developing a photoacoustic imaging system56
High-speed adaptive optics line-scan OCT for cellular-resolution optoretinography52
HER2 biosensing through SPR-envelope tracking in plasmonic optical fiber gratings51
Optical coherence tomography-based tissue dynamics imaging for longitudinal and drug response evaluation of tumor spheroids50
Multi-scale GCN-assisted two-stage network for joint segmentation of retinal layers and discs in peripapillary OCT images48
Machine learning-based LIBS spectrum analysis of human blood plasma allows ovarian cancer diagnosis48
ML-SIM: universal reconstruction of structured illumination microscopy images using transfer learning48
End-to-end Res-Unet based reconstruction algorithm for photoacoustic imaging47
High-speed and widefield handheld swept-source OCT angiography with a VCSEL light source47
Gold nanoparticle enhanced detection of EGFR with a terahertz metamaterial biosensor44
Convolutional neural network for resolution enhancement and noise reduction in acoustic resolution photoacoustic microscopy44
Quasi-distributed fiber optic sensor-based control system for interstitial laser ablation of tissue: theoretical and experimental investigations44
Evaluating β-amyloidosis progression in Alzheimer’s disease with Mueller polarimetry43
Terahertz dielectric spectroscopy of human brain gliomas and intact tissues ex vivo: double-Debye and double-overdamped-oscillator models of dielectric response43
Comparative study of the influence of imaging resolution on linear retardance parameters derived from the Mueller matrix42
Respiratory and heart rate monitoring using an FBG 3D-printed wearable system41
AV-Net: deep learning for fully automated artery-vein classification in optical coherence tomography angiography41
Smartphone-based optical spectroscopic platforms for biomedical applications: a review [Invited]41
Choosing a model for laser speckle contrast imaging40
Photoacoustic computed tomography for functional human brain imaging [Invited]40
Multicolor structured illumination microscopy and quantitative control of polychromatic light with a digital micromirror device38
Photoacoustic-guided surgery from head to toe [Invited]38
Multi-resolution open-top light-sheet microscopy to enable efficient 3D pathology workflows37
Impact of skin tone on photoacoustic oximetry and tools to minimize bias37
High-throughput 3D imaging of single cells with light-sheet fluorescence microscopy on chip35
Real-time, wide-field and high-quality single snapshot imaging of optical properties with profile correction using deep learning34
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy34
Hybrid mesh and voxel based Monte Carlo algorithm for accurate and efficient photon transport modeling in complex bio-tissues34
Three-dimensional dynamics optical coherence tomography for tumor spheroid evaluation33
Towards in-vivo label-free detection of brain tumor margins with epi-illumination tomographic quantitative phase imaging32
Imaging of vitreous cortex hyalocyte dynamics using non-confocal quadrant-detection adaptive optics scanning light ophthalmoscopy in human subjects32
Terahertz spectroscopic diagnosis of early blast-induced traumatic brain injury in rats32
Dual-view oblique plane microscopy (dOPM)32
Optical ptychography for biomedical imaging: recent progress and future directions [Invited]31
Integrating adaptive optics-SLO and OCT for multimodal visualization of the human retinal pigment epithelial mosaic31
High-resolution polarization-sensitive optical coherence tomography for zebrafish muscle imaging31
Hybrid deep learning network for vascular segmentation in photoacoustic imaging31
Rapid and label-free urine test based on surface-enhanced Raman spectroscopy for the non-invasive detection of colorectal cancer at different stages31
Wearable and wireless time-domain near-infrared spectroscopy system for brain and muscle hemodynamic monitoring31
Polarization and depolarization metrics as optical markers in support to histopathology of ex vivo colon tissue30
Motion-compensated noninvasive periodontal health monitoring using handheld and motor-based photoacoustic-ultrasound imaging systems30
Real-time noise reduction based on ground truth free deep learning for optical coherence tomography30
Automatic classification of esophageal disease in gastroscopic images using an efficient channel attention deep dense convolutional neural network29
Acoustic impact of the human skull on transcranial photoacoustic imaging29
Multi-meridian corneal imaging of air-puff induced deformation for improved detection of biomechanical abnormalities29
Photoacoustic imaging of hemodynamic changes in forearm skeletal muscle during cuff occlusion29
Hyperspectral imaging and robust statistics in non-melanoma skin cancer analysis29
Applications of augmented reality in ophthalmology [Invited]28
Wearable device for remote monitoring of transcutaneous tissue oxygenation28
Blood cancer diagnosis using ensemble learning based on a random subspace method in laser-induced breakdown spectroscopy28
Monte Carlo analysis of optical heart rate sensors in commercial wearables: the effect of skin tone and obesity on the photoplethysmography (PPG) signal28
Functional optical coherence tomography enables in vivo optoretinography of photoreceptor dysfunction due to retinal degeneration28
Optical monitoring of cerebral perfusion and metabolism in adults during cardiac surgery with cardiopulmonary bypass27
Differentiation of burn wounds in an in vivo porcine model using terahertz spectroscopy27
Skull acoustic aberration correction in photoacoustic microscopy using a vector space similarity model: a proof-of-concept simulation study27
Ballistocardiography monitoring system based on optical fiber interferometer aided with heartbeat segmentation algorithm27
Fast in vivo multiphoton light-sheet microscopy with optimal pulse frequency26
Deep learning approach to improve tangential resolution in photoacoustic tomography26
Computational tissue staining of non-linear multimodal imaging using supervised and unsupervised deep learning26
Differentiation of breast tissue types for surgical margin assessment using machine learning and polarization-sensitive optical coherence tomography26
Lightweight UV-C disinfection system26
Deep-learning-assisted microscopy with ultraviolet surface excitation for rapid slide-free histological imaging25
Portable ultra-widefield fundus camera for multispectral imaging of the retina and choroid25
Bayesian deep learning for reliable oral cancer image classification25
Terahertz dielectric spectroscopy and solid immersion microscopy of ex vivo glioma model 101.8: brain tissue heterogeneity25
Characterizing dynamic cerebral vascular reactivity using a hybrid system combining time-resolved near-infrared and diffuse correlation spectroscopy25
Probing variations of fibrous structures during the development of breast ductal carcinoma tissues via Mueller matrix imaging25
Multi-MHz MEMS-VCSEL swept-source optical coherence tomography for endoscopic structural and angiographic imaging with miniaturized brushless motor probes25
Deep-learning based multi-modal retinal image registration for the longitudinal analysis of patients with age-related macular degeneration25
Malignant and benign thyroid nodule differentiation through the analysis of blood plasma with terahertz spectroscopy25
Vision-correcting holographic display: evaluation of aberration correcting hologram25
Auto-detection of cervical collagen and elastin in Mueller matrix polarimetry microscopic images using K-NN and semantic segmentation classification25
Depth-selective data analysis for time-domain fNIRS: moments vs. time windows25
Strip-based digital image registration for distortion minimization and robust eye motion measurement from scanned ophthalmic imaging systems24
Dual GRIN lens two-photon endoscopy for high-speed volumetric and deep brain imaging24
Transcranial photobiomodulation-induced changes in human brain functional connectivity and network metrics mapped by whole-head functional near-infrared spectroscopy in vivo24
Single-shot hybrid photoacoustic-fluorescent microendoscopy through a multimode fiber with wavefront shaping24
Model of dynamic speckle evolution for evaluating laser speckle contrast measurements of tissue dynamics24
Deep-learning super-resolution light-sheet add-on microscopy (Deep-SLAM) for easy isotropic volumetric imaging of large biological specimens24
Polarimetric visualization of healthy brain fiber tracts under adverse conditions: ex vivo studies24
Deep learning-based light scattering microfluidic cytometry for label-free acute lymphocytic leukemia classification24
Visualizing human photoreceptor and retinal pigment epithelium cell mosaics in a single volume scan over an extended field of view with adaptive optics optical coherence tomography23
Transfontanelle photoacoustic imaging: ultrasound transducer selection analysis23
Detection of cerebral tauopathy in P301L mice using high-resolution large-field multifocal illumination fluorescence microscopy23
Microscopic optical coherence tomography (mOCT) at 600 kHz for 4D volumetric imaging and dynamic contrast23
Weakly supervised anomaly segmentation in retinal OCT images using an adversarial learning approach23
Optimizing deep bone ablation by means of a microsecond Er:YAG laser and a novel water microjet irrigation system23
Signal quality index: an algorithm for quantitative assessment of functional near infrared spectroscopy signal quality23
Wavelength and pulse energy optimization for detecting hypoxia in photoacoustic imaging of the neonatal brain: a simulation study23
Towards label-free 3D segmentation of optical coherence tomography images of the optic nerve head using deep learning23
Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy23
Sustained fatigue assessment during isometric exercises with time-domain near infrared spectroscopy and surface electromyography signals22
Fluorescence intensity and lifetime redox ratios detect metabolic perturbations in T cells22
Resolution enhancement and realistic speckle recovery with generative adversarial modeling of micro-optical coherence tomography22
Multi-spectral intravascular photoacoustic/ultrasound/optical coherence tomography tri-modality system with a fully-integrated 0.9-mm full field-of-view catheter for plaque vulnerability imaging22
Holo-UNet: hologram-to-hologram neural network restoration for high fidelity low light quantitative phase imaging of live cells22
Non-contact terahertz spectroscopic measurement of the intraocular pressure through corneal hydration mapping21
Three-dimensional imaging of intact porcine cochlea using tissue clearing and custom-built light-sheet microscopy21
Evolution of adaptive optics retinal imaging [Invited]21
Quantitative Jones matrix imaging using vectorial Fourier ptychography21
Optical design and performance of a trifocal sinusoidal diffractive intraocular lens20
OCT-GAN: single step shadow and noise removal from optical coherence tomography images of the human optic nerve head20
Effects of high intensity non-ionizing terahertz radiation on human skin fibroblasts20
Optical property recovery with spatially-resolved diffuse reflectance at short source-detector separations using a compact fiber-optic probe20
Frequency-doubled femtosecond Er-doped fiber laser for two-photon excited fluorescence imaging20
Deep learning architecture “LightOCT” for diagnostic decision support using optical coherence tomography images of biological samples20
High compression deep learning based single-pixel hyperspectral macroscopic fluorescence lifetime imaging in vivo20
Phasor-based image segmentation: machine learning clustering techniques20
Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture20
Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning20
Robust non-contact peripheral oxygenation saturation measurement using smartphone-enabled imaging photoplethysmography20
Light-adapted flicker optoretinograms captured with a spatio-temporal optical coherence-tomography (STOC-T) system19
In vivo functional imaging of the human middle ear with a hand-held optical coherence tomography device19
Organelle-specific phase contrast microscopy enables gentle monitoring and analysis of mitochondrial network dynamics19
Second harmonic generation characterization of collagen in whole bone19
Twenty-five years of clinical applications using adaptive optics ophthalmoscopy [Invited]19
Understanding the relationship between visual-angle and eye-angle for reliable determination of the field-of-view in ultra-wide field fundus photography19
Quantitative structural imaging of keratoconic corneas using polarization-resolved SHG microscopy19
Evaluation of the robustness of cerebral oximetry to variations in skin pigmentation using a tissue-simulating phantom19
Diagnosis and staging of multiple myeloma using serum-based laser-induced breakdown spectroscopy combined with machine learning methods19
Analysis of sensitivity in quantitative micro-elastography19
Automatic geographic atrophy segmentation using optical attenuation in OCT scans with deep learning19
Evaluation of transdermal drug delivery using terahertz pulsed imaging19
Highly sensitive detection of cytochrome c in the NSCLC serum using a hydrophobic paper based–gold nanourchin substrate19
IA-net: informative attention convolutional neural network for choroidal neovascularization segmentation in OCT images19
Machine learning model with physical constraints for diffuse optical tomography19
Quantitative multi-height phase retrieval via a coded image sensor19
Automated phase unwrapping in digital holography with deep learning19
A compact photonic resonator absorption microscope for point of care digital resolution nucleic acid molecular diagnostics19
Deconvolution for multimode fiber imaging: modeling of spatially variant PSF18
Reflective mirror-based line-scan adaptive optics OCT for imaging retinal structure and function18
Fast, multiplane line-scan confocal microscopy using axially distributed slits18
Quantification of scar collagen texture and prediction of scar development via second harmonic generation images and a generative adversarial network18
Complex wavelet filter improves FLIM phasors for photon starved imaging experiments18
Improving vascular imaging with co-planar mutually guided photoacoustic and diffuse optical tomography: a simulation study18
Multimodal fusion of EEG-fNIRS: a mutual information-based hybrid classification framework18
Imaging deeper than the transport mean free path with multiphoton microscopy18
Stokes polarization imaging applied for monitoring dynamic tissue optical clearing18
Complete head cerebral sensitivity mapping for diffuse correlation spectroscopy using subject-specific magnetic resonance imaging models18
Rapid computational cell-rotation around arbitrary axes in 3D with multi-core fiber18
Wavelet-based background and noise subtraction for fluorescence microscopy images18
High-speed multicolor structured illumination microscopy using a hexagonal single mode fiber array18
First-in-clinical application of a time-gated diffuse correlation spectroscopy system at 1064 nm using superconducting nanowire single photon detectors in a neuro intensive care unit18
Deep learning toolbox for automated enhancement, segmentation, and graphing of cortical optical coherence tomography microangiograms18
Measurement of tissue optical properties in a wide spectral range: a review [Invited]18
Limited-angle tomographic phase microscopy utilizing confocal scanning fluorescence microscopy18
Performance tradeoffs for single- and dual-objective open-top light-sheet microscope designs: a simulation-based analysis18
Comparison between image texture and polarization features in histopathology17
Retinal layer segmentation in optical coherence tomography (OCT) using a 3D deep-convolutional regression network for patients with age-related macular degeneration17
AOTF-based hyperspectral imaging phase microscopy17
Intravital longitudinal imaging of hepatic lipid droplet accumulation in a murine model for nonalcoholic fatty liver disease17
Laser-induced optical breakdown effects of micro-lens arrays and diffractive optical elements on ex vivo porcine skin after 1064 nm picosecond laser irradiation17
Photoacoustic dual-scan mammoscope: results from 38 patients17
Label-free imaging of fibroblast membrane interfaces and protein signatures with vibrational infrared photothermal and phase signals17
Towards in vivo photoacoustic imaging of vulnerable plaques in the carotid artery17
Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy17
Deep learning-based single-shot autofocus method for digital microscopy17
Machine learning for composition analysis of ssDNA using chemical enhancement in SERS17
Humanoid-shaped WaveFlex biosensor for the detection of food contamination17
Polarimetric data-based model for tissue recognition17
Multi-layer optical fiber surface plasmon resonance biosensor based on a sandwich structure of polydopamine-MoSe2@Au nanoparticles-polydopamine17
Histopathology for Mohs micrographic surgery with photoacoustic remote sensing microscopy17
Red and blue light in antitumor photodynamic therapy with chlorin-based photosensitizers: a comparative animal study assisted by optical imaging modalities17
Evaluation of bone perfusion during open orthopedic surgery using quantitative dynamic contrast-enhanced fluorescence imaging17
Identification and quantification of fibrotic areas in the human retina using polarization-sensitive OCT17
Adaptive optics for optical microscopy [Invited]17
In vivo intravascular photoacoustic imaging at a high speed of 100 frames per second17
Adaptive optics enables aberration-free single-objective remote focusing for two-photon fluorescence microscopy17
Real-time tool to layer distance estimation for robotic subretinal injection using intraoperative 4D OCT17
Machine learning-based rapid diagnosis of human borderline ovarian cancer on second-harmonic generation images17
Measuring glucose concentration in a solution based on the indices of polarimetric purity17
L1-L2 norm regularization via forward-backward splitting for fluorescence molecular tomography16
Disrupted signal variability of spontaneous neural activity in children with attention-deficit/hyperactivity disorder16
Recipes for diffuse correlation spectroscopy instrument design using commonly utilized hardware based on targets for signal-to-noise ratio and precision16
Hyperspectral imaging and spectral unmixing for improving whole-body fluorescence cryo-imaging16
Volumetric growth tracking of patient-derived cancer organoids using optical coherence tomography16
Generating large field of view en-face projection images from intra-acquisition motion compensated volumetric optical coherence tomography data16
Spectroscopic detection of traumatic brain injury severity and biochemistry from the retina16
Detection of single-base mutation of DNA oligonucleotides with different lengths by terahertz attenuated total reflection microfluidic cell16
Dynamic time domain near-infrared optical tomography based on a SPAD camera16
Characterization and quantification of necrotic tissues and morphology in multicellular ovarian cancer tumor spheroids using optical coherence tomography16
FLImBrush: dynamic visualization of intraoperative free-hand fiber-based fluorescence lifetime imaging16
Full-field spectral-domain optical interferometry for snapshot three-dimensional microscopy16
Functional optoretinography: concurrent OCT monitoring of intrinsic signal amplitude and phase dynamics in human photoreceptors16
Investigating the depolarization property of skin tissue by degree of polarization uniformity contrast using polarization-sensitive optical coherence tomography16
Probing layered structures by multi-color backscattering polarimetry and machine learning16
Analysis of strain estimation methods in phase-sensitive compression optical coherence elastography16
Kilohertz retinal FF-SS-OCT and flood imaging with hardware-based adaptive optics16
0.1 THz exposure affects primary hippocampus neuron gene expression via alternating transcription factor binding16
Moisture adsorption by decellularized bovine pericardium collagen matrices studied by terahertz pulsed spectroscopy and solid immersion microscopy16
A wide field-of-view, modular, high-density diffuse optical tomography system for minimally constrained three-dimensional functional neuroimaging16
Ultrahigh-speed multimodal adaptive optics system for microscopic structural and functional imaging of the human retina16
Phototoxicity induced in living HeLa cells by focused femtosecond laser pulses: a data-driven approach16
Wavefront sensor-less adaptive optics using deep reinforcement learning16
Dynamic fluorescence lifetime sensing with CMOS single-photon avalanche diode arrays and deep learning processors15
Stress management using fNIRS and binaural beats stimulation15
Multi-camera infrared thermography for infant respiration monitoring15
Effects of photobiomodulation on the redox state of healthy and cancer cells15
Direct mapping from diffuse reflectance to chromophore concentrations in multi-fx spatial frequency domain imaging (SFDI) with a deep residual network (DRN)15
Multi-speckle diffuse correlation spectroscopy to measure cerebral blood flow15
Line-scanning SD-OCT for in-vivo, non-contact, volumetric, cellular resolution imaging of the human cornea and limbus15
Open-top axially swept light-sheet microscopy15
Artifact removal in photoacoustic tomography with an unsupervised method15
Empirical assessment of laser safety for photoacoustic-guided liver surgeries15
Label-free histological imaging of tissues using Brillouin light scattering contrast15
All-fiber few-mode optical coherence tomography using a modally-specific photonic lantern15
Single infrared light pulses induce excitatory and inhibitory neuromodulation15
Laser-induced fluorescent visualization and photodynamic therapy in surgical treatment of glial brain tumors15
Evaluation of resonant scanning as a high-speed imaging technique for two-photon imaging of cortical vasculature15
High-fidelity and rapid cellular-level Mueller matrix imaging for tissue identification with unstained sections15
Imaging the dynamics of individual processes of microglia in the living retina in vivo15
Dynamic microscopic optical coherence tomography to visualize the morphological and functional micro-anatomy of the airways15
Fourier domain diffuse correlation spectroscopy with heterodyne holographic detection15
Three-dimensional collagen fiber mapping and tractography of human uterine tissue using OCT15
In vivo assessment of corneal biomechanics under a localized cross-linking treatment using confocal air-coupled optical coherence elastography15
Mapping metabolism of liver tissue using two-photon FLIM15
MF-AV-Net: an open-source deep learning network with multimodal fusion options for artery-vein segmentation in OCT angiography15
Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries15
Real-time OCT image denoising using a self-fusion neural network14
Localised light delivery on melanoma cells using optical microneedles14
Optical detection of formaldehyde in air in the 3.6 µm range14
Deep learning automated pathology in ex vivo microscopy14
Volumetric Lissajous confocal microscopy with tunable spatiotemporal resolution14
Surgical microscope integrated MHz SS-OCT with live volumetric visualization14
Polarization and Orbital Angular Momentum of Light in Biomedical Applications: feature issue introduction14
PhaseRMiC: phase real-time microscope camera for live cell imaging14
Vascular morphology and blood flow signatures for differential artery-vein analysis in optical coherence tomography of the retina14
Photoacoustic imaging of the spatial distribution of oxygen saturation in an ischemia-reperfusion model in humans14
Refractive-index matching enhanced polarization sensitive optical coherence tomography quantification in human brain tissue14
Light transport modeling in highly complex tissues using the implicit mesh-based Monte Carlo algorithm14
Analysis of retinal nerve fiber layer birefringence in patients with glaucoma and diabetic retinopathy by polarization sensitive OCT14
Accuracy of diffuse correlation spectroscopy measurements of cerebral blood flow when using a three-layer analytical model14
Continuous spectral zooming for in vivo live 4D-OCT with MHz A-scan rates and long coherence14
Probe-hosted large area silicon photomultiplier and high-throughput timing electronics for enhanced performance time-domain functional near-infrared spectroscopy14
Terahertz circular polarization sensing for protein denaturation based on a twisted dual-layer metasurface14
Optical palpation for tumor margin assessment in breast-conserving surgery14
Shot-noise limited tunable dual-vibrational frequency stimulated Raman scattering microscopy14
Motion-tracking Brillouin microscopy for in-vivo corneal biomechanics mapping14
Comparison of confocal and non-confocal split-detection cone photoreceptor imaging14
Fiber-laser platform for precision brain surgery14
In vivo assessment of inflammatory bowel disease in rats with ultrahigh-resolution colonoscopic OCT14
Analysis of correlations between local geographic atrophy growth rates and local OCT angiography-measured choriocapillaris flow deficits13
Depth-resolved vascular profile features for artery-vein classification in OCT and OCT angiography of human retina13
Polarization-based probabilistic discriminative model for quantitative characterization of cancer cells13
Polarization imaging-based radiomics approach for the staging of liver fibrosis13
Intraoperative colon perfusion assessment using multispectral imaging13
Evaluation of commercial virtually imaged phase array and Fabry-Pérot based Brillouin spectrometers for applications to biology13
Direct measurement of the scattering coefficient13
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