Biomedical Optics Express

Article	Citations
Multimodal analysis of traction forces and the temperature dynamics of living cells with a diamond-embedded substrate	119
Depth-resolved extraction of optical attenuation for glaucoma assessment in clinical settings: a pilot study	73
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher’s note	68
Fast and customizable image formation model for optical coherence tomography	60
Real-time closed-loop tissue-specific laser osteotomy using deep-learning-assisted optical coherence tomography	59
Aberration compensation in Doppler holography of the human eye fundus by subaperture signal correlation	54
Optical memory effect of excised cataractous human crystalline lenses	54
Unpaired intra-operative OCT (iOCT) video super-resolution with contrastive learning: erratum	53
Scaling method for efficient Monte Carlo simulation of fluorescence spectra from multi-layered turbid media with oblique illumination and collection geometry	47
Large diameter electrically tunable lens for ophthalmic distance accommodation	47
Three-dimensional mechanical characterization of murine skeletal muscle using quantitative micro-elastography	46
3D stimulated Raman spectral imaging of water dynamics associated with pectin-glycocalyceal entanglement	43
Portable in vivo confocal ophthalmoscope for non-contact imaging of the cornea and anterior segment of the eye	43
Aberration measurement and correction on a large field of view in fluorescence microscopy	40
Tandem aberration correction optics (TACO) in wide-field structured illumination microscopy	39
Longitudinal tracking of perfluorooctanoic acid exposure on mammary epithelial cell spheroids by dynamic optical coherence tomography	38
Corneal endothelium assessment in specular microscopy images with Fuchs’ dystrophy via deep regression of signed distance maps	38
Raman spectromics method for fast and label-free genotype screening	38
Optical tomography in a single camera frame using fringe-encoded deep-learning full-field OCT	37
Boosting few-shot confocal endomicroscopy image recognition with feature-level MixSiam	35
Dynamic Light Scattering in Biomedical Applications: feature issue introduction	35
Acoustomotive diffuse correlation spectroscopy for sensing mechanical stiffness in tissue-mimicking phantoms	34
Reconfigurable hardware-accelerated, multi-channel, adaptive temperature control platform of VCSELs for high-density fNIRS/DOT	33
Direct blood flow velocity measurements of zebrafish cerebral vessels with a dual-mode light-sheet microscope	33
Thermal imaging-based core peripheral temperature difference measurement for neonatal monitoring in the NICU	31

Noncontact longitudinal shear wave imaging for the evaluation of heterogeneous porcine brain biomechanical properties using optical coherence elastography	30
Modelling red blood cell optical trapping by machine learning improved geometrical optics calculations	30
Enhanced functionalities of immune cells separated by a microfluidic lattice: assessment based on holotomography	30
Image formation theory of optical coherence tomography with optical aberrations and its application to computational aberration correction	30
Tailored approach to study Legionella infection using a lattice light sheet microscope (LLSM)	30
Hybrid deep learning and optimal graph search method for optical coherence tomography layer segmentation in diseases affecting the optic nerve	29
Label free optical transmission tomography for biosystems: intracellular structures and dynamics	29
Systematic meta-analysis of computer-aided detection to detect early esophageal cancer using hyperspectral imaging	29
Prediction of the postoperative prognosis in patients with non-muscle-invasive bladder cancer based on preoperative serum surface-enhanced Raman spectroscopy	28
Recording dynamic facial micro-expressions with a multi-focus camera array	28
Optimized U-Net model for 3D light-sheet image segmentation of zebrafish trunk vessels	28
ESDiff: a joint model for low-quality retinal image enhancement and vessel segmentation using a diffusion model	28
Serum-based Raman spectroscopic diagnosis of blast-induced brain injury in a rat model	28
Three-dimensional cerebral vasculature topological parameter extraction of transgenic zebrafish embryos with a filling-enhancement deep learning network	28
Rapid 3D isotropic imaging of whole organ with double-ring light-sheet microscopy and self-learning side-lobe elimination	27
Semi-supervised 3D retinal fluid segmentation via correlation mutual learning with global reasoning attention	27
Evaluating the performance of OCT in assessing static and potential dynamic properties of the retinal ganglion cells and nerve fiber bundles in the living mouse eye	27
High-throughput and high-accuracy diagnosis of multiple myeloma with multi-object detection	27
Label-free multimodal imaging with simultaneous two-photon and three-photon microscopy and kernel-based nonlinear scaling denoising	26
Multiscale label-free imaging of myelin in human brain tissue with polarization-sensitive optical coherence tomography and birefringence microscopy	26
Method for nanoparticles uptake evaluation based on double labeled fluorescent cells scanned in enhanced darkfield microscopy	26
Functionalized optical fiber ball-shaped biosensor for label-free, low-limit detection of IL-8 protein	26
Quantitative Jones matrix imaging using vectorial Fourier ptychography	26
Near-infrared, wavelength, and illumination scanning holographic tomography	25
Rapid detection of hysteromyoma and cervical cancer based on serum surface-enhanced Raman spectroscopy and a support vector machine	25
Peripheral detection acuity for interference fringes and screen-based Gabor gratings	25
Blood metal analysis of plasmas from donors with and without SARS-CoV-2 using laser-induced breakdown spectroscopy and logistic regression	25
Relevance and utility of the in-vivo and ex-vivo optical properties of the skin reported in the literature: a review [Invited]	25
In-vitro study on the identification of gastrointestinal stromal tumor tissues using laser-induced breakdown spectroscopy with chemometric methods	25
Mask-guided network for finger vein feature extraction and biometric identification	25
High-speed, long-range and wide-field OCT for in vivo 3D imaging of the oral cavity achieved by a 600 kHz swept source laser	24
Optimal calibration of optical tweezers with arbitrary integration time and sampling frequencies: a general framework [Invited]	24
In-situ, real-time monitoring of thermo-mechanical properties of biological tissues undergoing laser heating and ablation	24
Deep learning for the detection of colon polyps with malignant potential: ex vivo classification using feature-enhanced optical coherence tomography (OCT) images	24
Localized transverse flow measurement with dynamic light scattering line-scan OCT	24
Enabling real-time reconstruction for large field-of-view single-molecule localization microscopy using discrete field-dependent point-spread function	24
Structural changes in the crystalline lens as a function of the postmortem interval assessed with two-photon imaging microscopy	23
Spatiotemporal defocus sensitivity function of the human visual system	23
Analysis of the key signaling pathway of baicalin that induces autophagy in papillary thyroid cancer via an optical resonator	23
Image stitching algorithm for super-resolution localization microscopy combined with fluorescence noise prior	22
Evaluation of Slowfade Diamond as a buffer for STORM microscopy	22
Axial scanning of dual focus to improve light sheet microscopy	22
Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells	22
Motion-less depth-selective optogenetic probe using tapered fiber and an electrically tuneable liquid crystal steering element	22
Comparison of fluorescence lifetime and multispectral imaging for quantitative multiplexing in biological tissue: erratum	22
Adaptive optics scanning laser ophthalmoscopy and optical coherence tomography (AO-SLO-OCT) system for in vivo mouse retina imaging	22
PCIe-based FPGA-GPU heterogeneous computation for real-time multi-emitter fitting in super-resolution localization microscopy	22
Recovering fetal signals transabdominally through interferometric near-infrared spectroscopy (iNIRS)	22
Microbubble dynamics and jetting near tissue-phantom biointerfaces	22
Three-dimensional image-guided topical photodynamic therapy system with light dosimetry dynamic planning and monitoring	22

Air-pulse optical coherence elastography: how excitation angle affects mechanical wave propagation	22
METABOLIC IMAGING OF FRAGILARIOPSIS CYLINDRUS IN POLAR NIGHT CONDITIONS USING FULL FIELD OPTICAL TRANSMISSION TOMOGRAPHY (FFOTT)	22
Mueller polarimetric imaging as a tool for detecting the effect of non-thermal plasma treatment on the skin	22
Remote laser-speckle sensing of heart sounds for health assessment and biometric identification	21
Attenuation coefficient as a tool to detect changes in the white matter of the rat brain caused by different types of gliomas and irradiation	21
Discriminating healthy from tumor tissue in breast lumpectomy specimens using deep learning-based hyperspectral imaging	21
ISOSNet: a unified framework for cone photoreceptor detection and inner segment and outer segment length measurement from AO-OCT B-scans	21
Blood pressure estimation by spatial pulse-wave dynamics in a facial video	21
Comprehensive advancement in endoscopy: optical design, algorithm enhancement, and clinical validation for merged WLI and CBI imaging	21
Probabilistic volumetric speckle suppression in OCT using deep learning	21
Deep-learning-based automated measurement of outer retinal layer thickness for use in the assessment of age-related macular degeneration, applicable to both swept-source and spectral-domain OCT imagin	21
Studying fluctuating trajectories of optically confined passive tracers inside cells provides familiar active forces	20
Deep learning segmentation of the tear fluid reservoir under the sclera lens in optical coherence tomography images	20
Deep learning and sub-band fluorescence imaging-based method for caries and calculus diagnosis embeddable on different smartphones	20
Long-term imaging of three-dimensional hyphal development using the ePetri dish	20
Compact and low-cost deep-ultraviolet microscope system for label-free molecular imaging and point-of-care hematological analysis	20
Regression-based neural network for improving image reconstruction in diffuse optical tomography	20
Automatic search for photoacoustic marker using automated transrectal ultrasound	20
Single-shot quantitative phase microscopy: a multi-functional tool for cell analysis	20
Primary assessment of medicines for expected migrastatic potential with holographic incoherent quantitative phase imaging	20
Automatic zoning for retinopathy of prematurity with semi-supervised feature calibration adversarial learning	20
Feasibility of the soft attention-based models for automatic segmentation of OCT kidney images	20
Evaluation of a liquid membrane-based tunable lens and a solid-state LIDAR camera feedback system for presbyopia	20
Joint estimation of point spread function and molecule positions in SMLM informed from multiple planes	20
Two-dimensional nonlinear structured illumination microscopy with rsEGFP2	20
Plasmon enhanced luminescence of Tb/Eu co-doped film by Au NRs-PVA nanocomposite film	19
Multiscale imaging of corneal endothelium damage and Rho-kinase inhibitor application in mouse models of acute ocular hypertension	19
Bessel beam side lobe suppression via non-degenerate two-photon excitation	19
Rapid and cost-effective screening of therapeutic targets for isoquercitrin in insulin resistance using virtual methods and fiber SPR biosensing	19
A machine learning framework for the quantification of experimental uveitis in murine OCT	19
Four-color fluorescence cross-correlation spectroscopy with one laser and one camera	19
Nanozyme-active Au@Pt NRs array SERS platform based on a recognition competition strategy for convenient and ultrasensitive detection of miR-106a-5p associated with cerebral infarction	19
Confocal reflectance microscopy for mapping collagen fiber organization in the vitreous gel of the eye	19
Fiber-laser platform for precision brain surgery	19
Microfluidic point-of-care testing device for multiplexed detection of liver function blood markers	19
Second harmonic generation of myofibrils exhibits a polarization-resolved “gradient” effect	18
Fabrication and performance evaluation of a design for an extended depth-of-focus intraocular lens based on an improved sinusoidal profile	18
Diffuse reflectance spectroscopy sensor to differentiate between glial tumor and healthy brain tissue: a proof-of-concept study	18
Multicolor two-photon light-patterning microscope exploiting the spatio-temporal properties of a fiber bundle	18
Study of cerebrovascular reactivity to hypercapnia by imaging photoplethysmography to develop a method for intraoperative assessment of the brain functional reserve	18
Non-contact confocal calcium imaging of in vivo murine corneal nerves	18
Retinal reconstruction from peripheral biometry	18
Noninvasive measurement of the vital signs of cancer patients with a dual-path microbend fiber sensor	18
Multi-modality imaging technologies and machine learning for non-invasive, precise assessment of rabbit endometrium	18
Hyper-brain independent component analysis (HB-ICA): an approach for detecting inter-brain networks from fNIRS-hyperscanning data	18
Retinal magnification factors at the fixation locus derived from schematic eyes with four individualized surfaces	18
Recent breakthroughs in digital holography, 2D/3D imaging, and holographic optical elements: introduction	18
Preprocessing methods for quantitative phase image stitching	18
Method to improve the localization accuracy and contrast recovery of lesions in separately acquired X-ray and diffuse optical tomographic breast imaging	18
Ultrafast laser bone ablation towards high surgical speeds and clinically relevant operation times for spine surgeries	18
Lock-in functional near-infrared spectroscopy for measurement of the haemodynamic brain response	18
Out-of-focus signal rejection for in vivo pO2 measurements using two-photon phosphorescence lifetime microscopy	18
Ultra-low-cost and high-fidelity NIR-II confocal laser scanning microscope with Bessel beam excitation and SiPM detection	17
Deep learning for denoising in a Mueller matrix microscope	17
Introduction to the Biophotonics Congress 2024 feature issue	17
Sinogram to image: direct reconstruction of photoacoustic tomography image using a hybrid deep learning approach	17
CGAN-rIRN: a data-augmented deep learning approach to accurate classification of mental tasks for a fNIRS-based brain-computer interface	17
Real-time data processing in colorimetry camera-based single-molecule localization microscopy via CPU-GPU-FPGA heterogeneous computation	17
Self-calibrated 3D differential phase contrast microscopy with optimized illumination	17
Asymmetric parameter enhancement in the split-ring cavity array for virus-like particle sensing	17
3D transformer-enhanced multi-scale global co-attention network for precise diabetic macular edema segmentation in OCT volumes	17
AI-aided segmentation of four types of drusen in volumetric OCT	17
In vivo ultrasound modulated optical tomography with a persistent spectral hole burning filter	17
Development of a multiparameter phantom system for multispectral imaging	17
Effects of tactile feedback in post-stroke hand rehabilitation on functional connectivity and cortical activation: an fNIRS study	17
Polarization effects on the fluorescence emission of zebrafish neurons using light-sheet microscopy	16
Biocompatible spider silk-based metal-dielectric fiber optic sugar sensor	16
Rapid spectral shaping for time domain and swept source full field OCT	16
Motion-tracking Brillouin microscopy for in-vivo corneal biomechanics mapping	16
Post-operative monitoring of tissue perfusion in murine skin flaps using enhanced thermal imaging	16
Compression OCT-elastography combined with speckle-contrast analysis as an approach to the morphological assessment of breast cancer tissue	16
DIRECT, a low-cost system for high-speed, low-noise imaging of fluorescent bio-samples	16
Pressure stimulus study on acupuncture points with multi-channel multimode-fiber diffuse speckle contrast analysis (MMF-DSCA)	16
Imaging of vitreous cortex hyalocyte dynamics using non-confocal quadrant-detection adaptive optics scanning light ophthalmoscopy in human subjects	16
Study on the detection method of biological characteristics of hepatoma cells based on terahertz time-domain spectroscopy	16
Dynamic inverse SNR-decorrelation OCT angiography with GPU acceleration	16
In vivo endoscopic optical coherence elastography based on a miniature probe	16
Robustness of diffuse reflectance spectra analysis by inverse adding doubling algorithm	16
Spectroscopic thermo-elastic optical coherence tomography for tissue characterization: publisher’s note	16
Noninvasive estimation of superficial layer thickness using multi-channel diffuse correlation spectroscopy	16

Portable optical fiber biosensors integrated with smartphone: technologies, applications, and challenges [Invited]	16
Application of quantum imaging in biology	16
Adaptive optics in an oblique plane microscope	16
Fiber-optic large-depth 3D chromatic confocal endomicroscopy	16
Characteristics of frontal activity relevant to cognitive function in bipolar depression: an fNIRS study	16
MXene-based SERS spectroscopic analysis of exosomes for lung cancer differential diagnosis with deep learning	16
Dynamic optical coherence tomography for cell analysis [Invited]	16
Non-invasive glucose extraction by a single polarization rotator system in patients with diabetes: erratum	16
Changes to the shape, orientation and packing of red cells as a function of retinal capillary size	16
Towards noninvasive white blood cell count	15
Biometry study of foveal isoplanatic patch variation for adaptive optics retinal imaging	15
Identification of late-life depression and mild cognitive impairment via serum surface-enhanced Raman spectroscopy and multivariate statistical analysis	15
Thermal Lensing Effects in Two-Photon Light-Sheet Microscopy	15
Ring-segment piezopolymer sensor optimized for cylindrical-wave detection in optical-resolution optoacoustic angiography with extended imaging depth	15
Diffuse correlation tomography: a technique to characterize tissue blood flow abnormalities in benign and malignant breast lesions	15
Computational refocusing of Jones matrix polarization-sensitive optical coherence tomography and investigation of defocus-induced polarization artifacts	15
Perceptual cost and benefit of presbyopia-correcting intraocular lenses: effect of energy balance, addition, and adaptation	15
Ultra-fast line-field swept source scanning optical coherence elastography	15
Femtosecond laser oocyte enucleation as a low-invasive and effective method of recipient cytoplast preparation	15
Neural-network based high-speed volumetric dynamic optical coherence tomography	15
Spatial-temporal correlations in the speckle pattern for the characterization of cellular motion within a 3D object	15
Elimination of stripe artifacts in light sheet fluorescence microscopy using an attention-based residual neural network	15
Imaging and component analysis of pumpkin stem tissue with simultaneous SF-CARS and TPEF microscopy	15
Assessing depth sensitivity in laser interferometry speckle visibility spectroscopy (iSVS) through source-to-detector distance variation and cerebral blood flow monitoring in humans and rabbits	15
Rapid clearing and imaging of Mohs and melanoma surgical margins using a low-cost tissue processor	15
Orbital angular momentum mode fiber force sensing technology based on intensity interrogation	15
Embedded CPU-GPU pupil tracking	15
Validation of an automated method for studying retinal capillary blood flow	15
Chirp excitation for natural frequency optical coherence elastography	15
Realtime and noninvasive assessment of endotracheal tube displacement using near-infrared and visible cameras	15
Introduction to the Optics and the Brain 2023 feature issue	15
Segmentation of anatomical layers and imaging artifacts in intravascular polarization sensitive optical coherence tomography using attending physician and boundary cardinality losses	15
In situ measurement of the stiffness increase in the posterior sclera after UV-riboflavin crosslinking by optical coherence elastography	15
Weakly supervised identification of microscopic human breast cancer-related optical signatures from normal-appearing breast tissue	14
Clarification on the understanding of contrast theory in relation to the article “ON and OFF receptive field processing in the presence of optical scattering”: comment	14
Application of fluorescence lifetime imaging microscopy to monitor glucose metabolism in pancreatic islets in vivo	14
Multimodal illumination platform for 3D single-molecule super-resolution imaging throughout mammalian cells	14
Picosecond laser capture microdissection based on edge catapulting combined with dielectrophoretic force	14
Plug-and-play DPC-based quantitative phase microscope	14
MRI/fluorescence dual-mode probe: its simple preparation method and imaging application in vitro	14
Electronic frequency shifting enables long, variable working distance optical coherence tomography	14
Deep convolutional neural networks-based scatterer density and resolution estimators in optical coherence tomography: erratum	14
Towards Point-of-Care Tests for protein detection at the attomolar level via disposable pollen-based nanoplasmonic probes grafted with polymer-based receptors	14
Dome-APIC illumination design for high space-bandwidth product analytic imaging	14
Three-dimensional dynamic optical coherence tomography for breast tumor margin assessment	14
Portable, smartphone-linked, and miniaturized photonic resonator absorption microscope (PRAM Mini) for point-of-care diagnostics	14
Experimental and modeling analysis of lenses with concentric cylindrical annular refractive elements: impact on peripheral imaging	14
Multi-step deep neural network for identifying subfascial vessels in a dorsal skinfold window chamber model	14
Accelerating whole-sample polarization-resolved second harmonic generation imaging in mammary gland tissue via generative adversarial networks	14
Simultaneous detection of circulating tumor DNAs using a SERS-based lateral flow assay biosensor for point-of-care diagnostics of head and neck cancer	14
Single-input polarization-sensitive optical coherence tomography through a catheter	14
Quantitative comparison of spinning disk geometries for PAINT based super-resolution microscopy	14
On the physiological processes underlying optoretinography [Invited]	14
Dual-channel air-pulse optical coherence elastography for frequency-response analysis	14
Laser pulse train parameters determine the brightness of a two-photon stimulus	14
Silver mean sequence in extended depth of focus intraocular lenses: a comparative study of kinoform and stepwise designs	14
Enhancing image reconstruction in photoacoustic imaging using spatial coherence mean-to-standard-deviation factor beamforming	14
GPU-accelerated image registration algorithm in ophthalmic optical coherence tomography	14
Introduction to the feature issue: Advances in Optical Biosensors for Biomedical Applications	14
Relative peripheral refraction with accommodation in 6- to 11-year-olds: baseline findings from the Stockholm Myopia Study	13
MulitDeepsurv: Survival analysis of gastric cancer based on deep learning multimodal fusion models	13
Diffuse reflectance spectroscopy for accurate margin assessment in breast-conserving surgeries: importance of an optimal number of fibers	13
Adversarial training collaborating hybrid convolution-transformer network for automatic identification of reactive lymphocytes in peripheral blood	13
Non-contact measurement of neck pulses achieved by imaging micro-motions in the neck skin	13
Reconstruction based on adaptive group least angle regression for fluorescence molecular tomography	13
Challenging the skin pigmentation bias in tissue oximetry via time-domain near-infrared spectroscopy	13
Laparoscopic near-infrared hyperspectral imaging system for identifying living porcine nerves and unexposed arteries	13
Multi-kernel driven 3D convolutional neural network for automated detection of lung nodules in chest CT scans	13
Integrated fixation and stimulus channel for adaptive optics ophthalmoscopy	13
Label-free enzymatic reaction monitoring in water-in-oil microdroplets using ultra-broadband multiplex coherent anti-Stokes Raman scattering spectroscopy	13
Individualized modeling for the peripheral optics of the human myopic eye	13
Performance of focus-tunable presbyopia correction lenses operated using gaze-tracking and LIDAR	13
Digital histological staining of tissue slide images from optical coherence microscopy	13
Design and characterization of a time-domain optical tomography platform for mesoscopic lifetime imaging	13
Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering	13
Feature matching for texture-less endoscopy images via superpixel vector field consistency	13
Dynamic-OCT simulation framework based on mathematical models of intratissue dynamics, image formation, and measurement noise	13
Visualization of blood-brain barrier disruption with dual-wavelength high-resolution photoacoustic microscopy	13
Sodium alginate-based tissue-mimicking phantom with tunable optical properties for laser thermotherapy	13
Method to determine the centration of a lenticule of tissue extracted from a cornea	13
Visible near-infrared hyperspectral imaging and supervised classification for the detection of small intestinal necrosis tissue in vivo	13
Widefield optical coherence tomography by electro-optical modulation	13
Chromatic cues for the sign of defocus in the peripheral retina	13
Biological Cells as Natural Biophotonic Devices: Fundamental and Applications–introduction to the feature issue	13
Review of shortwave infrared imaging and spectroscopy in tissue [Invited]	13
Development of next generation low-cost OCT towards improved point-of-care retinal imaging	12
Label-free full-field Doppler phase microscopy based on optical computation	12
Megahertz dynamic optical coherence tomography of blisters in human skin	12
Quantitative analysis of gingival vascular morphology using optical coherence tomography angiography in induced gingivitis	12
Laser speckle simulation tool based on stochastic differential equations for bio imaging applications	12
All-fiber passively Q-switched Tm-doped laser with a mode field area mismatched Tm-doped saturable absorber	12
Feasibility using a compact fiber optic Sagnac interferometer for non-contact soft tissue surface mechanical wave speed detection	12
Corneal imaging with blue-light optical coherence microscopy	12
Proof of concept validation of bioresorbable optical fibers for diffuse correlation spectroscopy	12
Miniature, multi-dichroic instrument for measuring the concentration of multiple fluorophores	12