Microbial Genomics

Papers
(The H4-Index of Microbial Genomics is 25. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)
ArticleCitations
Helicobacter cinaedi is a human-adapted lineage in the Helicobacter cinaedi/canicola/‘magdeburgensis’ complex619
Multiple independent losses of sporulation and peptidoglycan in the Mycoplasmatales and related orders of the class Bacilli333
Genomic and pathogenicity analyses to identify the causative agent from multiple serogroups of non-O1, non-O139 Vibrio cholerae in foodborne outbreaks129
Optimization of high-throughput 16S rRNA gene amplicon sequencing: an assessment of PCR pooling, mastermix use and contamination66
Bilateral symmetry of linear streptomycete chromosomes62
A metagenomic approach to One Health surveillance of antimicrobial resistance in a UK veterinary centre56
Acquisition of Type I methyltransferase via horizontal gene transfer increases the drug resistance of Aeromonas veronii56
Development and validation of a core-genome multilocus sequence typing scheme for Legionella longbeachae48
Third generation cephalosporin resistance in clinical non-typhoidal Salmonella enterica in Germany and emergence of bla CTX-M-harbouring pESI plasmids46
Molecular characterization of Coxsackievirus A2 isolated from hand, foot and mouth disease in eastern China44
Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom41
Assessing the safety of microbiome perturbations41
Prophages encoding human immune evasion cluster genes are enriched in Staphylococcus aureus isolated from chronic rhinosinusitis patients with nasal polyps39
Evaluating the impact of genomic epidemiology of methicillin-resistant Staphylococcus aureus (MRSA) on hospital infection prevention and control decisions39
The primate gut microbiota contributes to interspecific differences in host metabolism39
A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens34
Transcriptional landscape of Burkholderia pseudomallei cultured under environmental and clinical conditions32
The clinical, genomic, and microbiological profile of invasive multi-drug resistant Escherichia coli in a major teaching hospital in the United Kingdom31
Development of a novel streamlined workflow (AACRE) and database (inCREDBle) for genomic analysis of carbapenem-resistant Enterobacterales31
Analysis of genome instability and implications for the consequent phenotype in Plasmodium falciparum containing mutated MSH2-1 (P513T)30
Assembly collapsing versus heterozygosity oversizing: detection of homokaryotic and heterokaryotic Laccaria trichodermophora strains by hybrid genome assembly30
Comparative genomics of a novel Erwinia species associated with the Highland midge (Culicoides impunctatus)29
Identifying gene-level mechanisms of successful dispersal of Vibrio parahaemolyticus during El Niño events28
Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae27
Genomic comparisons of Escherichia coli ST131 from Australia27
Novel emm4 lineage associated with an upsurge in invasive group A streptococcal disease in the Netherlands, 202225
Transcriptomic analysis of Pseudomonas ogarae F113 reveals the antagonistic roles of AmrZ and FleQ during rhizosphere adaption25
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