npj Biofilms and Microbiomes

Papers
(The TQCC of npj Biofilms and Microbiomes is 17. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-02-01 to 2024-02-01.)
ArticleCitations
Analysis of microbial compositions: a review of normalization and differential abundance analysis115
Altered oral and gut microbiota and its association with SARS-CoV-2 viral load in COVID-19 patients during hospitalization106
Metagenomic analysis revealed the potential role of gut microbiome in gout85
Interactions of plasma-activated water with biofilms: inactivation, dispersal effects and mechanisms of action83
Three faces of biofilms: a microbial lifestyle, a nascent multicellular organism, and an incubator for diversity81
Microbial predictors of healing and short-term effect of debridement on the microbiome of chronic wounds78
Berberine attenuates choline-induced atherosclerosis by inhibiting trimethylamine and trimethylamine-N-oxide production via manipulating the gut microbiome76
Economic significance of biofilms: a multidisciplinary and cross-sectoral challenge75
Metaproteomics characterizes human gut microbiome function in colorectal cancer74
Seasonal dynamics of diet–gut microbiota interaction in adaptation of yaks to life at high altitude72
Network analysis infers the wilt pathogen invasion associated with non-detrimental bacteria63
Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale62
The sources and transmission routes of microbial populations throughout a meat processing facility62
Who put the film in biofilm? The migration of a term from wastewater engineering to medicine and beyond58
Host development overwhelms environmental dispersal in governing the ecological succession of zebrafish gut microbiota57
Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery53
Systematic analysis of gut microbiota in pregnant women and its correlations with individual heterogeneity51
The insect antimicrobial peptide cecropin A disrupts uropathogenic Escherichia coli biofilms50
Microbial co-occurrence network topological properties link with reactor parameters and reveal importance of low-abundance genera49
Oral biofilms exposure to chlorhexidine results in altered microbial composition and metabolic profile48
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics48
Treatment with Anaerobutyricum soehngenii: a pilot study of safety and dose–response effects on glucose metabolism in human subjects with metabolic syndrome48
Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth47
Parameters influencing the development of highly conductive and efficient biofilm during microbial electrosynthesis: the importance of applied potential and inorganic carbon source44
Vaginal microbiota and human papillomavirus infection among young Swedish women43
Exposure of Salmonella biofilms to antibiotic concentrations rapidly selects resistance with collateral tradeoffs41
Burns and biofilms: priority pathogens and in vivo models41
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis40
Biofilms harbour Clostridioides difficile, serving as a reservoir for recurrent infection39
Compartmentalization of bacterial and fungal microbiomes in the gut of adult honeybees39
The biofilm-associated surface protein Esp of Enterococcus faecalis forms amyloid-like fibers39
The biofilm matrix scaffold of Pseudomonas aeruginosa contains G-quadruplex extracellular DNA structures37
Bacterial vaginosis and health-associated bacteria modulate the immunometabolic landscape in 3D model of human cervix37
Chinese gut microbiota and its associations with staple food type, ethnicity, and urbanization36
Biofilm viability checker: An open-source tool for automated biofilm viability analysis from confocal microscopy images35
Identification of small molecules that interfere with c-di-GMP signaling and induce dispersal of Pseudomonas aeruginosa biofilms35
Improved functionality of Ligilactobacillus salivarius Li01 in alleviating colonic inflammation by layer-by-layer microencapsulation35
Interactions between gut microbiota and metabolites modulate cytokine network imbalances in women with unexplained miscarriage34
Polymicrobial periodontal disease triggers a wide radius of effect and unique virome34
Nonlinear rheological characteristics of single species bacterial biofilms33
Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum33
Gut microbiota determines the social behavior of mice and induces metabolic and inflammatory changes in their adipose tissue33
Intestinal release of biofilm-like microcolonies encased in calcium-pectinate beads increases probiotic properties of Lacticaseibacillus paracasei32
Integrated metagenomics identifies a crucial role for trimethylamine-producing Lachnoclostridium in promoting atherosclerosis32
Synergistic action of phage phiIPLA-RODI and lytic protein CHAPSH3b: a combination strategy to target Staphylococcus aureus biofilms31
Human organoid biofilm model for assessing antibiofilm activity of novel agents31
An integrated model system to gain mechanistic insights into biofilm-associated antimicrobial resistance in Pseudomonas aeruginosa MPAO129
Bio-priming with a hypovirulent phytopathogenic fungus enhances the connection and strength of microbial interaction network in rapeseed29
Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers29
Atherosclerosis amelioration by allicin in raw garlic through gut microbiota and trimethylamine-N-oxide modulation28
Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort28
The evolutionary trajectories of P. aeruginosa in biofilm and planktonic growth modes exposed to ciprofloxacin: beyond selection of antibiotic resistance28
Real-time monitoring of ruminal microbiota reveals their roles in dairy goats during subacute ruminal acidosis28
A bacteriocin-based antimicrobial formulation to effectively disrupt the cell viability of methicillin-resistant Staphylococcus aureus (MRSA) biofilms28
The zoonotic pathogen Leptospira interrogans mitigates environmental stress through cyclic-di-GMP-controlled biofilm production28
Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing26
A multiomics approach to identify host-microbe alterations associated with infection severity in diabetic foot infections: a pilot study26
Responses of soil microbiome to steel corrosion26
Streptococcus mutans adhesion force sensing in multi-species oral biofilms26
Disrupting quorum sensing alters social interactions in Chromobacterium violaceum26
Biological role of EPS from Pseudomonas syringae pv. syringae UMAF0158 extracellular matrix, focusing on a Psl-like polysaccharide26
Network-directed efficient isolation of previously uncultivated Chloroflexi and related bacteria in hot spring microbial mats25
Host-microbiome interactions: Gut-Liver axis and its connection with other organs25
Experimental parameters defining ultra-low biomass bioaerosol analysis25
Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth–gut axis25
Identification of essential genes for Escherichia coli aryl polyene biosynthesis and function in biofilm formation24
Gut dysbiosis and mortality in hemodialysis patients24
Transcriptomic evidence for versatile metabolic activities of mercury cycling microorganisms in brackish microbial mats23
Biogeographical patterns and mechanisms of microbial community assembly that underlie successional biocrusts across northern China23
Veillonellaceae family members uniquely alter the cervical metabolic microenvironment in a human three-dimensional epithelial model23
Reduced stress-associated FKBP5 DNA methylation together with gut microbiota dysbiosis is linked with the progression of obese PCOS patients23
Salivary dysbiosis in Sjögren’s syndrome and a commensal-mediated immunomodulatory effect of salivary gland epithelial cells22
Impact of temperature-dependent phage expression on Pseudomonas aeruginosa biofilm formation22
Uncharted waters: the unintended impacts of residual chlorine on water quality and biofilms21
A new BiofilmChip device for testing biofilm formation and antibiotic susceptibility21
Engineered lactobacilli display anti-biofilm and growth suppressing activities against Pseudomonas aeruginosa21
Genetic requirements and transcriptomics of Helicobacter pylori biofilm formation on abiotic and biotic surfaces21
Gut microbiota and metabolites of α-synuclein transgenic monkey models with early stage of Parkinson’s disease21
Short-term supplementation of celecoxib-shifted butyrate production on a simulated model of the gut microbial ecosystem and ameliorated in vitro inflammation20
Biofilm-isolated Listeria monocytogenes exhibits reduced systemic dissemination at the early (12–24 h) stage of infection in a mouse model20
Diversity and infectivity of the RNA virome among different cryptic species of an agriculturally important insect vector: whitefly Bemisia tabaci20
Detection of gut microbiota and pathogen produced N-acyl homoserine in host circulation and tissues19
Magnetotactic bacteria and magnetofossils: ecology, evolution and environmental implications19
Microbial electroactive biofilms dominated by Geoalkalibacter spp. from a highly saline–alkaline environment18
Attachment and antibiotic response of early-stage biofilms studied using resonant hyperspectral imaging18
The human respiratory tract microbial community structures in healthy and cystic fibrosis infants18
IolR, a negative regulator of the myo-inositol metabolic pathway, inhibits cell autoaggregation and biofilm formation by downregulating RpmA in Aeromonas hydrophila18
Rational consideration of Akkermansia muciniphila targeting intestinal health: advantages and challenges17
Network mapping of root–microbe interactions in Arabidopsis thaliana17
Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria17
Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host17
Fluorescent nanosensors reveal dynamic pH gradients during biofilm formation17
Periodontitis associates with species-specific gene expression of the oral microbiota17
Evolution of biofilm-adapted gene expression profiles in lasR-deficient clinical Pseudomonas aeruginosa isolates17
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