OOIR: Observatory of International Research

Papers

(The median citation count of Microscopy is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Phase plates in the transmission electron microscope: operating principles and applications	24
Applications of deep learning in electron microscopy	23
Miniature microscopes for manipulating and recording in vivo brain activity	21
Identification of lymphatic endothelium in cranial arachnoid granulation-like dural gap	20
Forty years in cryoEM of membrane proteins	19
Electron tomography imaging methods with diffraction contrast for materials research	18
Toward quantitative electromagnetic field imaging by differential-phase-contrast scanning transmission electron microscopy	17
Interference and interferometry in electron holography	17
Malaria parasite classification framework using a novel channel squeezed and boosted CNN	16
Advances in cryo-EM and ED with a cold-field emission beam and energy filtration —Refinements of the CRYO ARM 300 system in RIKEN SPring-8 center—	16
Advances in ultrahigh-energy resolution EELS: phonons, infrared plasmons and strongly coupled modes	15
Recent advances in computational methods for measurement of dendritic spines imaged by light microscopy	15
Cryo-EM performance testing of hardware and data acquisition strategies	15
Live-cell imaging probes to track chromatin modification dynamics	13
Interaction of human erythrocyte catalase with air–water interface in cryoEM	13
Kelvin probe force microscopy for material characterization	13
In situ observation of the deterioration process of sulfide-based solid electrolytes using airtight and air-flow TEM systems	11
Data-driven electron microscopy: electron diffraction imaging of materials structural properties	11
Local structure analysis of amorphous materials by angstrom-beam electron diffraction	11
Cryo-electron microscopy of the giant viruses	10
Transport of intensity equation method and its applications	10
Correlation of organelle dynamics between light microscopic live imaging and electron microscopic 3D architecture using FIB-SEM	9
Development of tilt-scan system for differential phase contrast scanning transmission electron microscopy	8
Development of NMIJ CRM 5207-a tungsten dot-array for the image sharpness evaluation in scanning electron microscopy – structure evaluation and determination of dot-pitch	8
Three-dimensional structure analysis of melanocytes and keratinocytes in senile lentigo	8

SEM-EDX and FTIR analysis of archaeological ceramic potteries from southern Italy	8
Attention-guided multi-scale deep object detection framework for lymphocyte analysis in IHC histological images	8
Recent progress and future perspective of electron cryomicroscopy for structural life sciences	8
Phase-shifting electron holography for accurate measurement of potential distributions in organic and inorganic semiconductors	8
Fine structure of Aldrovanda vesiculosa L: the peculiar lifestyle of an aquatic carnivorous plant elucidated by electron microscopy using cryo-techniques	8
Denoising of series electron holograms using tensor decomposition	8
Histochemical assessment on the cellular interplay of vascular endothelial cells and septoclasts during endochondral ossification in mice	8
Improved chemical fixation of lipid-secreting plant cells for transmission electron microscopy	7
Fabrication of a liquid cell for in situ transmission electron microscopy	7
Visualization of Arabidopsis root system architecture in 3D by refraction-contrast X-ray micro-computed tomography	7
Theory underpinning multislice simulations with plasmon energy losses	7
Scanning ion-conductance microscopy with a double-barreled nanopipette for topographic imaging of charged chromosomes	6
Analysis of ciliary status via G-protein-coupled receptors localized on primary cilia	6
Electron microscopy for polymer structures	6
Effect of nitrogen-containing bisphosphonates on osteoclasts and osteoclastogenesis: an ultrastructural study	6
Spatiotemporal resolution in high-speed atomic force microscopy for studying biological macromolecules in action	5
Enhancement of image contrast for carbon nanotube and polymer composite film in scanning electron microscope	5
Study of high–low KPFM on a pn-patterned Si surface	5
Improving the depth resolution of STEM-ADF sectioning by 3D deconvolution	5
Deep convolutional neural network image processing method providing improved signal-to-noise ratios in electron holography	5
Protein–lipid interplay at the neuromuscular junction	5
Wave field reconstruction and phase imaging by electron diffractive imaging	5
Atomic-resolution STEM image denoising by total variation regularization	5
Evolution in X-ray analysis from micro to atomic scales in aberration-corrected scanning transmission electron microscopes	5
A photoswitchable fluorescent protein for hours-time-lapse and sub-second-resolved super-resolution imaging	5
Spatial resolution in secondary-electron microscopy	4
Evaluation of accuracy in the determination of crystal structure factors using large-angle convergent-beam electron diffraction patterns	4
Development of a gas environmental heating specimen holder system using differential pumping	4
Electron irradiation damage of amorphous epoxy resin at low electron doses	4
Improved unroofing protocols for cryo-electron microscopy, atomic force microscopy and freeze-etching electron microscopy and the associated mechanisms	4
Fine cryo-SEM observation of the microstructure of emulsions frozen via high-pressure freezing	4
Recent advances in small-angle electron diffraction and Lorentz microscopy	4
Improvements in fundamental performance of in-liquid frequency modulation atomic force microscopy	4
Holography: application to high-resolution imaging	4
Evaluating the roughness dynamics of kefir biofilms grown on Amazon cupuaçu juice: a monofractal and multifractal approach	4
Detection of autophagy-related structures in fruiting bodies of edible mushroom, Pleurotus ostreatus	4
Morphological components detection for super-depth-of-field bio-micrograph based on deep learning	4
Effect of learning parameters on the performance of the U-Net architecture for cell nuclei segmentation from microscopic cell images	3
Evaluation of image distortion in SEM by using a dot-array–based certified reference material	3
Computational evaluation of sparse coding on off-axis electron holograms: comparison between charge-coupled device and direct-detection device cameras	3
Attosecond electron-beam technology: a review of recent progress	3
Three-dimensional electron tomography and recent expansion of its applications in materials science	3
Insulin protects against type 1 diabetes mellitus-induced ultrastructural abnormalities of pancreatic islet microcirculation	3
A quantitative analysis of bone lamellarity and bone collagen linearity induced by distinct dosing and frequencies of teriparatide administration in ovariectomized rats and monkeys	3
Effects of aging on basement membrane of tibialis anterior muscle during recovery following muscle injury in rats	3
Measurement of cell volume using in-line digital holography	3
Phase detection limits in off-axis electron holography from pixelated detectors: gain variations, geometric distortion and failure of reference-hologram correction	3
3D mesoscopic architecture of a heterogeneous cellular network in the cementum–periodontal ligament–alveolar bone complex	3
Performance of a silicon-on-insulator direct electron detector in a low-voltage transmission electron microscope	3
Sandwich freezing device for rapid freezing of viruses, bacteria, yeast, cultured cells and animal and human tissues in electron microscopy	3

Phase imaging dislocations using diffracted beam interferometry	3
Spatial and phase resolution in electron microscopy	3
Practical implementation of high-resolution electron ptychography and comparison with off-axis electron holography	3
Lorentz scanning electron/ion microscopy	3
Glutaraldehyde and uranyl acetate dual fixation combined sputtering/unroofing enables intracellular fatty acids TOF-SIMS imaging with organelle-corresponding subcellular distribution	3
Machine-learning-based quality-level-estimation system for inspecting steel microstructures	3
Correlative light and volume electron microscopy to study brain development	3
Development of a Mach-Zehnder type electron interferometer on a 1.2-MV field-emission transmission electron microscope	2
Magnetic flux density measurements from narrow grain boundaries produced in sintered permanent magnets	2
Label-free microscopy for virus infections	2
Ultrastructural evidence for an unusual mode of ciliogenesis in mouse multiciliated epithelia	2
Magnetization controlled by crystallization in soft magnetic Fe-Si-B-P-Cu alloys	2
Improved efficiency in automated acquisition of ultra-high-resolution electron holograms using automated target detection	2
Advances in fluorescence microscopy for orthohantavirus research	2
Three-dimensional visualization of plant tissues and organs by X-ray micro–computed tomography	2
Single-molecule observation of self-propagating amyloid fibrils	2
Correlative volume-imaging using combined array tomography and FIB-SEM tomography with beam deceleration for 3D architecture visualization in tissue	2
Microscopy and biomimetics: the NanoSuit® method and image retrieval platform	2
Similarity analysis of stacking sequences in a SiC nanowire pair grown from the same catalyst nanoparticle using Levenshtein distance	2
Temporal resolution in transmission electron microscopy using a photoemission electron source	2
Damage-less observation of polymers by electron dose control in scanning electron microscope	2
Identifying proteins in the cell by tagging techniques for cryo-electron microscopy	2
Distribution of amniotic stem cells in human term amnion membrane	2
Evaluation of TEM specimen quality prepared by focused ion beam using symmetry breaking index of convergent-beam electron diffraction	2
Development and applications of ultrafast transmission electron microscopy	2
Reliable electrochemical setup for in situ observations with an atmospheric SEM	2
Reducing manual operation time to obtain a segmentation learning model for volume electron microscopy using stepwise deep learning with manual correction	2
Toward complex observation in electron microscopy using two-dimensional electron detector coupled with phase plate STEM	2
Exploring the influence of focused ion beam processing and scanning electron microscopy imaging on solid-state electrolytes	2
Filovirus helical nucleocapsid structures	2
Tight-junction strand networks and tightness of the epithelial barrier	2
Three-dimensionally visualized rhizoid system of moss, Physcomitrium patens, by refraction-contrast X-ray micro-computed tomography	2
Feasibility of control of particle assembly by dielectrophoresis in liquid-cell transmission electron microscopy	2
Inhibition of retinoid X receptor improved the morphology, localization of desmosomal proteins and paracellular permeability in three-dimensional cultures of mouse keratino	1
TEM observation of inorganic substances distributed in gel materials for medical devices using ultra-thin cryosectioning	1
Real-time scanning electron microscopy of unfixed tissue in the solution using a deformable and electron-transmissive film	1
Classifying liganded states in heterogeneous single-particle cryo-EM datasets	1
Application of deproteinized bovine bone mineral as proangiogenic scaffold for alveolar bone formation in beagle dogs	1
Low-dose measurement of electric potential distribution in organic light-emitting diode by phase-shifting electron holography with 3D tensor decomposition	1
Hybrid mode atomic force microscopy of phase modulation and frequency modulation	1
TEM observation of compacted DNA of Synechococcus elongatus PCC 7942 using DRAQ5 labeling with DAB photooxidation and osmium black	1
In-situ shearing process observation system for soft materials via transmission electron microscopy	1
Correction to: Low-energy scanning transmission electron microscopy applied to ice-embedded biological macromolecules	1
Development of temporal series 4D-STEM and application to relaxation time measurement	1
Serial ultrathin sections to identify ultrastructural localization of GLUT1 molecules in vesicles in brain endothelial cells—correlative light and electron microscopy in depth	1
Orbital angular momentum-resolved convergent-beam electron diffraction by the post-selected injection of electron beam	1
Cryogenic electron microscopy approaches that combine images and tilt series	1
Operando observation of magnetism in HDD writing heads by spin-polarized scanning electron microscopy	1
A preparation of bacterial outer membrane with osmium tetroxide and uranyl acetate co-stain enables improved structural determination by transmission electron microscopy	1
Classification for transmission electron microscope images from different amorphous states using persistent homology	1
TEM and STEM-EDS evaluation of metal nanoparticle encapsulation in GroEL/GroES complexes according to the reaction mechanism of chaperonin	1
Analytical technique for self-absorption structure of iron L-emission spectra obtained by soft X-ray emission spectrometer	1
Recent advances in in-resin correlative light and electron microscopy of Epon-embedded cells	1
A novel technique of STEM observation of TEM section using LVSEM and application of pathological diagnosis of renal biopsy	1
Super-resolution reconstruction based on BM3D and compressed sensing	1
Advanced observation of brain and nerve cells using two-photon microscopy with novel techniques	1
Model-based deconvolution for particle analysis applied to a through-focus series of HAADF-STEM images	1
Imaging neural circuit pathology of autism spectrum disorders: autism-associated genes, animal models and the application ofin vivotwo-photon imaging	1
Measuring mechanical properties with high-speed atomic force microscopy	1
Direct observation of the moment of nucleation from a solution by TEM	1
Study on the heterogeneous material coupling connection characteristics and mechanical strength of Oratosquilla oratoria mantis shrimp saddle	1
Progress in spatial resolution of structural analysis by cryo-EM	1
Design and fabrication of an electrochemical chip for liquid-phase transmission electron microscopy	1
Study on the dissolution of β-precipitates in the Zr–1Nb alloy under the influence of Ne ion irradiation	1
Electron microscopic visualization of single molecules by tag-mediated metal particle labeling	1
Photobleaching reduction in modulated super-resolution microscopy	1
Novel −75°C SEM cooling stage: application for martensitic transformation in steel	1
Microstructural observation of the swollen catalyst layers of fuel cells by cryo-TEM	1
Three-dimensional culture of a pancreatic cancer cell line, SUIT-58, with air exposure can reflect the intrinsic features of the original tumor through electron microscopy	1
Dynamics, structure and assembly of the basement membrane in developing salivary glands revealed by an exogenous EGFP-tagged nidogen probe	1
Verification of permeability for ionic liquid into biological specimens by using a mass spectrometer	1