Microbiome

Article	Citations
Phylogeny-guided microbiome OTU-specific association test (POST)	527
Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines	463
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments	449
Correction: Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella	352
Correction: Gut microbiota-derived propionate mediates the neuroprotective effect of osteocalcin in a mouse model of Parkinson’s disease	345
Role of nasal microbiota in regulating host anti-influenza immunity in dogs	308
Should we modulate the neonatal microbiome and what should be the goal?	284
No microorganism was detected in amniotic fluid of healthy pregnancies from the second trimester to the delivery	253
Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils	200
Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments	190
Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom	182
Landscape of the gut archaeome in association with geography, ethnicity, urbanization, and diet in the Chinese population	179
Using strain-resolved analysis to identify contamination in metagenomics data	174
Cooperation between host immunity and the gut bacteria is essential for helminth-evoked suppression of colitis	171
Androgen-induced gut dysbiosis disrupts glucolipid metabolism and endocrinal functions in polycystic ovary syndrome	166
H2 generated by fermentation in the human gut microbiome influences metabolism and competitive fitness of gut butyrate producers	161
Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem	158
Stool energy density is positively correlated to intestinal transit time and related to microbial enterotypes	158
Microbiota-indole 3-propionic acid-brain axis mediates abnormal synaptic pruning of hippocampal microglia and susceptibility to ASD in IUGR offspring	150
Type 1 diabetes in pregnancy is associated with distinct changes in the composition and function of the gut microbiome	150
Bifidobacterial carbohydrate/nucleoside metabolism enhances oxidative phosphorylation in white adipose tissue to protect against diet-induced obesity	149
Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota	147
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis	146
Integrated multi-omics analysis reveals the positive leverage of citrus flavonoids on hindgut microbiota and host homeostasis by modulating sphingolipid metabolism in mid-lactation dairy cows consumin	139
Effects of melatonin on rumen microorganisms and methane production in dairy cow: results from in vitro and in vivo studies	138

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome	131
Blocked conversion of Lactobacillus johnsonii derived acetate to butyrate mediates copper-induced epithelial barrier damage in a pig model	131
Colonization during a key developmental window reveals microbiota-dependent shifts in growth and immunity during undernutrition	129
Gut dysbiosis promotes prostate cancer progression and docetaxel resistance via activating NF-κB-IL6-STAT3 axis	128
From dysbiosis to defense: harnessing the gut microbiome in HIV/SIV therapy	128
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes	123
Microbial community regulation and performance enhancement in gas biofilters by interrupting bacterial communication	116
Colonocyte-derived lactate promotes E. coli fitness in the context of inflammation-associated gut microbiota dysbiosis	116
Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly	115
A glimpse of the paleome in endolithic microbial communities	114
SCAPP: an algorithm for improved plasmid assembly in metagenomes	113
Eubacterium siraeum suppresses fat deposition via decreasing the tyrosine-mediated PI3K/AKT signaling pathway in high-fat diet-induced obesity	107
Milk oligosaccharide-driven persistence of Bifidobacterium pseudocatenulatum modulates local and systemic microbial metabolites upon synbiotic treatment in conventionally colonized mice	107
Determination of antibiotic resistance patterns and genotypes of Escherichia coli isolated from wild birds	105
Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD+	104
Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis	104
Geography, not lifestyle, explains the population structure of free-living and host-associated deep-sea hydrothermal vent snail symbionts	104
Elucidating the role of the gut microbiota in the physiological effects of dietary fiber	102
Disentangling environmental effects in microbial association networks	102
Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs	100
VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution	99
Biogeographical survey of soil microbiomes across sub-Saharan Africa: structure, drivers, and predicted climate-driven changes	98
Gut metabolites predict Clostridioides difficile recurrence	95
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture	93
Characterizing the gut phageome and phage-borne antimicrobial resistance genes in pigs	91
Metabolite-based dietary supplementation in human type 1 diabetes is associated with microbiota and immune modulation	89
Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome	88
Correction to: Disentangling environmental effects in microbial association networks	86
Correction: Inulin diet uncovers complex diet-microbiota-immune cell interactions remodeling the gut epithelium	84
Complementary insights into gut viral genomes: a comparative benchmark of short- and long-read metagenomes using diverse assemblers and binners	84
Microbial growth and volatile organic compound (VOC) emissions from carpet and drywall under elevated relative humidity conditions	83
Gut barrier-microbiota imbalances in early life lead to higher sensitivity to inflammation in a murine model of C-section delivery	82
A synbiotic mixture of selected oligosaccharides and bifidobacteria assists murine gut microbiota restoration following antibiotic challenge	80
Gut-derived IL-13 contributes to growth via promoting hepatic IGF-1 production	78
Integration of spatio-temporal variations of surface metabolomes and epibacterial communities highlights the importance of copper stress as a major factor shaping host-microbiota interactions within a	78
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics	78
Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data	76
High-resolution metagenomic reconstruction of the freshwater spring bloom	76
The effect of 3-nitrooxypropanol, a potent methane inhibitor, on ruminal microbial gene expression profiles in dairy cows	76
Altered gut metabolites and microbiota interactions are implicated in colorectal carcinogenesis and can be non-invasive diagnostic biomarkers	76
Gut microbiota-derived ursodeoxycholic acid alleviates low birth weight-induced colonic inflammation by enhancing M2 macrophage polarization	75
The core root microbiome of Spartina alterniflora is predominated by sulfur-oxidizing and sulfate-reducing bacteria in Georgia salt marshes, USA	75
Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale	75
Global analysis of the biosynthetic chemical space of marine prokaryotes	75
BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes	74
Metaproteomics reveals diet-induced changes in gut microbiome function according to Crohn’s disease location	74
Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments	74
Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem	73
Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions	72
Response and resilience of anammox consortia to nutrient starvation	72

Synergistic action of the gut microbiota in environmental RNA interference in a leaf beetle	72
Non-antibiotic pharmaceuticals promote conjugative plasmid transfer at a community-wide level	72
Metagenome-assembled genome reveals species and functional composition of Jianghan chicken gut microbiota and isolation of Pediococcus acidilactic with probiotic properties	72
Stable, fluorescent markers for tracking synthetic communities and assembly dynamics	70
Functional traits and adaptation of lake microbiomes on the Tibetan Plateau	70
Lactobacillus reuteri improves the development and maturation of fecal microbiota in piglets through mother-to-infant microbe and metabolite vertical transmission	69
RhoB affects colitis through modulating cell signaling and intestinal microbiome	69
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata	68
A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions	68
Correction: Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments	67
Diet prevents the expansion of segmented filamentous bacteria and ileo-colonic inflammation in a model of Crohn’s disease	67
Correction to: Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches	67
The role of the oral microbiota in the causal effect of adjunctive antibiotics on clinical outcomes in stage III–IV periodontitis patients	67
Human microbiota research in Africa: a systematic review reveals gaps and priorities for future research	65
Sulfate-dependant microbially induced corrosion of mild steel in the deep sea: a 10-year microbiome study	64
Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones	63
Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes	63
Decoding populations in the ocean microbiome	62
Fecal microbiota transplantation improves chicken growth performance by balancing jejunal Th17/Treg cells	62
Gut microbiome-metabolome interactions predict host condition	61
Plant domestication shapes rhizosphere microbiome assembly and metabolic functions	60
Vitamin B12 produced by Cetobacterium somerae improves host resistance against pathogen infection through strengthening the interactions within gut microbiota	60
Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity	59
Predicting microbial community compositions in wastewater treatment plants using artificial neural networks	59
The community ecology perspective of omics data	58
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs	58
Population structure of an Antarctic aquatic cyanobacterium	58
Realising respiratory microbiomic meta-analyses: time for a standardised framework	58
The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection	57
Correction: Nepali oral microbiomes reflect a gradient of lifestyles from traditional to industrialized	57
Multi-omics investigation into long-distance road transportation effects on respiratory health and immunometabolic responses in calves	56
Correction: Chicken jejunal microbiota improves growth performance by mitigating intestinal inflammation	56
Uncovering the genomic basis of symbiotic interactions and niche adaptations in freshwater picocyanobacteria	56
Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost	55
Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome	55
Metagenomics insights into responses of rhizobacteria and their alleviation role in licorice allelopathy	55
Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis	54
Host species and habitat shape fish-associated bacterial communities: phylosymbiosis between fish and their microbiome	54
Host-microbiota interaction-mediated resistance to inflammatory bowel disease in pigs	54
Phosphorus availability influences disease-suppressive soil microbiome through plant-microbe interactions	54
Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes	54
Quantifying functional redundancy in polysaccharide-degrading prokaryotic communities	53
Akkermansia muciniphila improve cognitive dysfunction by regulating BDNF and serotonin pathway in gut-liver-brain axis	52
The microbial dark matter and “wanted list” in worldwide wastewater treatment plants	52
Four functional profiles for fibre and mucin metabolism in the human gut microbiome	51
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank	51
Reductive acetogenesis is a dominant process in the ruminant hindgut	51
Multimodal analysis identifies microbiome changes linked to stem cell transplantation-associated diseases	51
Lose-lose consequences of bacterial community-driven invasions in soil	51
The fungal microbiota modulate neonatal oxygen-induced lung injury	50
The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective	50
Microbiome multi-omics can accelerate human excrement composting research	50
Selection processes of Arctic seasonal glacier snowpack bacterial communities	50
Cross-alteration of murine skin and tick microbiome concomitant with pathogen transmission after Ixodes ricinus bite	49
Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs	49
Parabacteroides distasonis regulates the infectivity and pathogenicity of SVCV at different water temperatures	49
Correction: Characterization of diazotrophic root endophytes in Chinese silvergrass (Miscanthus sinensis)	49
Increased genital mucosal cytokines in Canadian women associate with higher antigen-presenting cells, inflammatory metabolites, epithelial barrier disruption, and the depletion of L. crispatus	48
Surface fungal diversity and several mycotoxin-related genes’ expression profiles during the Lunar Palace 365 experiment	48
Life-long microbiome rejuvenation improves intestinal barrier function and inflammaging in mice	48
Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study	48
Characterization of two keystone taxa, sulfur-oxidizing, and nitrate-reducing bacteria, by tracking their role transitions in the benzo[a]pyrene degradative microbiome	48
Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions	48
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes	48
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe	48
TLR4 regulates RORγt+ regulatory T-cell responses and susceptibility to colon inflammation through interaction with Akkermansia muciniphila	47
Antibiotic exposure prevents acquisition of beneficial metabolic functions in the preterm infant gut microbiome	47
Maternal Western diet mediates susceptibility of offspring to Crohn’s-like colitis by deoxycholate generation	47
The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children	47
Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station	47
Pet cats may shape the antibiotic resistome of their owner’s gut and living environment	47
Parabacteroides produces acetate to alleviate heparanase-exacerbated acute pancreatitis through reducing neutrophil infiltration	47
Effect of a multi-strain probiotic mixture consumption on anxiety and depression symptoms induced in adult mice by postnatal maternal separation	47
Newly isolated Lactobacillus paracasei strain modulates lung immunity and improves the capacity to cope with influenza virus infection	46
In-depth characterization of food and environmental microbiomes across different meat processing plants	46
Trophic level drives the host microbiome of soil invertebrates at a continental scale	46
Enhanced mutualistic symbiosis between soil phages and bacteria with elevated chromium-induced environmental stress	45
Correction: Metagenomic sequencing reveals time, host, and body compartment-specific viral dynamics after lung transplantation	45
Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function	45
Correction to: Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice	45

Correction: Live Akkermansia muciniphila boosts dendritic cell retinoic acid synthesis to modulate IL-22 activity and mitigate colitis in mice	44
Proportion-based normalizations outperform compositional data transformations in machine learning applications	44
Physiological versatility of ANME-1 and Bathyarchaeotoa-8 archaea evidenced by inverse stable isotope labeling	44
Rhizosphere phage communities drive soil suppressiveness to bacterial wilt disease	43
Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants	43
Statistical modeling of gut microbiota for personalized health status monitoring	43
A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae	43
Diet at birth is critical for healthy growth, independent of effects on the gut microbiota	43
Dietary ellagic acid therapy for CNS autoimmunity: Targeting on Alloprevotella rava and propionate metabolism	42
Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection	42
The gut microbiome in patients with Cushing’s disease affects depression- and anxiety-like behavior in mice	42
Mycorrhiza-mediated recruitment of complete denitrifying Pseudomonas reduces N2O emissions from soil	41
Beyond bacterial vaginosis: vaginal lactobacilli and HIV risk	41
Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts	41
Microscopic marine invertebrates are reservoirs for cryptic and diverse protists and fungi	41
A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)	40
Targeted viromes and total metagenomes capture distinct components of bee gut phage communities	40
Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages	40
Revealing the composition of the eukaryotic microbiome of oyster spat by CRISPR-Cas Selective Amplicon Sequencing (CCSAS)	40
The hindgut microbiome contributes to host oxidative stress in postpartum dairy cows by affecting glutathione synthesis process	40
Deterministic colonization arises early during the transition of soil bacteria to the phyllosphere and is shaped by plant–microbe interactions	40
Plastic leachates impair picophytoplankton and dramatically reshape the marine microbiome	40
Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil	40
Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort	40
A simplified synthetic community rescues Astragalus mongholicus from root rot disease by activating plant-induced systemic resistance	39
Gut microbiome transitions across generations in different ethnicities in an urban setting—the HELIUS study	39
Towards enhancing coral heat tolerance: a “microbiome transplantation” treatment using inoculations of homogenized coral tissues	39
Human gut-derived B. longum subsp. longum strains protect against aging in a d-galactose-induced aging mouse model	39
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests	39
Decline of a distinct coral reef holobiont community under ocean acidification	39
Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling	39
Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage	38
Circadian dynamics of the teleost skin immune-microbiome interface	38
Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro	38
Increased methane production associated with community shifts towards Methanocella in paddy soils with the presence of nanoplastics	38
Microbiomes of clownfish and their symbiotic host anemone converge before their first physical contact	38
Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion	38
Predicting how varying moisture conditions impact the microbiome of dust collected from the International Space Station	38
Effects of data transformation and model selection on feature importance in microbiome classification data	37
Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation	37
The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders	37
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus	37
Microbiota in mesenteric adipose tissue from Crohn’s disease promote colitis in mice	37
A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome	37
Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis	36
Bikaverin as a molecular weapon: enhancing Fusarium oxysporum pathogenicity in bananas via rhizosphere microbiome manipulation	36
Relative abundance data can misrepresent heritability of the microbiome	36
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria	36
Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles	36
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere	36
Commensal microbe-derived acetate suppresses NAFLD/NASH development via hepatic FFAR2 signalling in mice	36
A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere	36
The multi-kingdom microbiome of the goat gastrointestinal tract	36
Clean room microbiome complexity impacts planetary protection bioburden	35
Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station	35
Natural plant disease suppressiveness in soils extends to insect pest control	35
Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance	35
Destabilization of mutualistic interactions shapes the early heat stress response of the coral holobiont	35
Evolutionary diversification and succession of soil huge phages in glacier foreland	34
Correction: A remarkably diverse and well-organized virus community in a filter-feeding oyster	34
F. prausnitzii potentially modulates the association between citrus intake and depression	34
Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium	34
Human endogenous retrovirus K in the respiratory tract is associated with COVID-19 physiopathology	34
Guts within guts: the microbiome of the intestinal helminth parasite Ascaris suum is derived but distinct from its host	33
Lactiplantibacillus plantarum FRT4 protects against fatty liver hemorrhage syndrome: regulating gut microbiota and FoxO/TLR-4/NF-κB signaling pathway in laying hens	33
Metabolic modeling of the International Space Station microbiome reveals key microbial interactions	33
Mosquito sex and mycobiota contribute to fructose metabolism in the Asian tiger mosquito Aedes albopictus	33
Antibiotic-associated changes in Akkermansia muciniphila alter its effects on host metabolic health	33
Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes	33
Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring	33
Mouse mammary tumor virus is implicated in severity of colitis and dysbiosis in the IL-10−/− mouse model of inflammatory bowel disease	33
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR	33
Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies	32
Rumen microbiome associates with postpartum ketosis development in dairy cows: a prospective nested case–control study	32
Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching	32
Developing whole cell standards for the microbiome field	32
Chicken intestinal microbiota modulation of resistance to nephropathogenic infectious bronchitis virus infection through IFN-I	32
Gut microbiota–derived metabolite 3-idoleacetic acid together with LPS induces IL-35+ B cell generation	32
Ningxiang pig-derived lactobacillus reuteri modulates host intramuscular fat deposition via branched-chain amino acid metabolism	32
Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome	32
Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production	31
Distinct gut microbiome characteristics and dynamics in patients with Parkinson’s disease based on the presence of premotor rapid-eye movement sleep behavior disorders	31
Bacterial aerobic methane cycling by the marine sponge-associated microbiome	31
Distinct B cell subsets in Peyer’s patches convey probiotic effects by Limosilactobacillus reuteri	31
Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics	31
Experimental community coalescence sheds light on microbial interactions in soil and restores impaired functions	31
Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics	31
Metabolome-driven microbiome assembly determining the health of ginger crop (Zingiber officinale L. Roscoe) against rhizome rot	30
pH-FISH: coupled microscale analysis of microbial identity and acid–base metabolism in complex biofilm samples	30
Medium-chain fatty acid triglycerides improve feed intake and oxidative stress of finishing bulls by regulating ghrelin concentration and gastrointestinal tract microorganisms and rumen metabolites	30
Gut microbiome of helminth-infected indigenous Malaysians is context dependent	30
Selection for environmental variance shifted the gut microbiome composition driving animal resilience	30
The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota	30
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model	30
Candidate Phyla Radiation (CPR) bacteria from hyperalkaline ecosystems provide novel insight into their symbiotic lifestyle and ecological implications	30