Microbiome

Article	Citations
Effects of melatonin on rumen microorganisms and methane production in dairy cow: results from in vitro and in vivo studies	433
Correction: Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella	427
Correction: Gut microbiota-derived propionate mediates the neuroprotective effect of osteocalcin in a mouse model of Parkinson’s disease	243
Microbiota-indole 3-propionic acid-brain axis mediates abnormal synaptic pruning of hippocampal microglia and susceptibility to ASD in IUGR offspring	241
Using strain-resolved analysis to identify contamination in metagenomics data	209
Integrated multi-omics analysis reveals the positive leverage of citrus flavonoids on hindgut microbiota and host homeostasis by modulating sphingolipid metabolism in mid-lactation dairy cows consumin	199
Colonocyte-derived lactate promotes E. coli fitness in the context of inflammation-associated gut microbiota dysbiosis	190
Stool energy density is positively correlated to intestinal transit time and related to microbial enterotypes	188
Bifidobacterial carbohydrate/nucleoside metabolism enhances oxidative phosphorylation in white adipose tissue to protect against diet-induced obesity	186
Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom	185
Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem	179
Impact of diet in shaping gut virome of grain-fed and grass-fed beef cattle revealed by a comparative metagenomic study	171
Should we modulate the neonatal microbiome and what should be the goal?	171
Metabolite-mediated interactions and direct contact between Fusobacterium varium and Faecalibacterium prausnitzii	170
β-Elemonic acid mediated enrichment of Paenibacillus to help Salvia miltiorrhiza Bunge alleviate drought stress	170
Engrafting gut bacteriophages have potential to modulate microbial metabolism in fecal microbiota transplantation	157
A glimpse of the paleome in endolithic microbial communities	157
Role of nasal microbiota in regulating host anti-influenza immunity in dogs	147
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments	147
Landscape of the gut archaeome in association with geography, ethnicity, urbanization, and diet in the Chinese population	140
Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments	138
Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines	130
Colonization during a key developmental window reveals microbiota-dependent shifts in growth and immunity during undernutrition	130
From dysbiosis to defense: harnessing the gut microbiome in HIV/SIV therapy	129
No microorganism was detected in amniotic fluid of healthy pregnancies from the second trimester to the delivery	125

Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota	123
Gut dysbiosis promotes prostate cancer progression and docetaxel resistance via activating NF-κB-IL6-STAT3 axis	122
Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly	112
Phylogeny-guided microbiome OTU-specific association test (POST)	109
Microbial community regulation and performance enhancement in gas biofilters by interrupting bacterial communication	107
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes	104
Blocked conversion of Lactobacillus johnsonii derived acetate to butyrate mediates copper-induced epithelial barrier damage in a pig model	101
H2 generated by fermentation in the human gut microbiome influences metabolism and competitive fitness of gut butyrate producers	100
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis	99
Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD+	99
Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils	99
Gut barrier-microbiota imbalances in early life lead to higher sensitivity to inflammation in a murine model of C-section delivery	98
Correction to: Disentangling environmental effects in microbial association networks	95
Complementary insights into gut viral genomes: a comparative benchmark of short- and long-read metagenomes using diverse assemblers and binners	95
Geography, not lifestyle, explains the population structure of free-living and host-associated deep-sea hydrothermal vent snail symbionts	93
A synbiotic mixture of selected oligosaccharides and bifidobacteria assists murine gut microbiota restoration following antibiotic challenge	93
Gut metabolites predict Clostridioides difficile recurrence	91
Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome	89
Determination of antibiotic resistance patterns and genotypes of Escherichia coli isolated from wild birds	89
Metaproteomics reveals diet-induced changes in gut microbiome function according to Crohn’s disease location	88
Gut-derived IL-13 contributes to growth via promoting hepatic IGF-1 production	88
Distinguishing diet- and microbe-derived metabolites in the human gut	87
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics	86
Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis	85
Disentangling environmental effects in microbial association networks	85
Characterizing the gut phageome and phage-borne antimicrobial resistance genes in pigs	85
The effect of 3-nitrooxypropanol, a potent methane inhibitor, on ruminal microbial gene expression profiles in dairy cows	84
Correction: Inulin diet uncovers complex diet-microbiota-immune cell interactions remodeling the gut epithelium	82
Global analysis of the biosynthetic chemical space of marine prokaryotes	82
Metabolite-based dietary supplementation in human type 1 diabetes is associated with microbiota and immune modulation	79
VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution	78
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture	76
Biogeographical survey of soil microbiomes across sub-Saharan Africa: structure, drivers, and predicted climate-driven changes	76
High-resolution metagenomic reconstruction of the freshwater spring bloom	75
Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments	75
The core root microbiome of Spartina alterniflora is predominated by sulfur-oxidizing and sulfate-reducing bacteria in Georgia salt marshes, USA	75
Altered gut metabolites and microbiota interactions are implicated in colorectal carcinogenesis and can be non-invasive diagnostic biomarkers	75
Elucidating the role of the gut microbiota in the physiological effects of dietary fiber	75
Gut microbiota-derived ursodeoxycholic acid alleviates low birth weight-induced colonic inflammation by enhancing M2 macrophage polarization	74
Eubacterium siraeum suppresses fat deposition via decreasing the tyrosine-mediated PI3K/AKT signaling pathway in high-fat diet-induced obesity	73
Correction: Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments	72
Milk oligosaccharide-driven persistence of Bifidobacterium pseudocatenulatum modulates local and systemic microbial metabolites upon synbiotic treatment in conventionally colonized mice	72
Interactions with native microbial keystone taxa enhance the biocontrol efficiency of Streptomyces	71
Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity	71
Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions	70
Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes	70
Gut microbiome-metabolome interactions predict host condition	69
Gut microbiota-derived short-chain fatty acids promote follicular maturation via gWAT-ovary axis in mammals	69
Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem	69
Regulation on microbial composition,serotonergic synapse, and apoptotic signaling pathway by extracts fromSonchus brachyotus DC. (SBE) to improve ethanol-induced acute oxidative stress in mice	68

The role of the oral microbiota in the causal effect of adjunctive antibiotics on clinical outcomes in stage III–IV periodontitis patients	68
Functional traits and adaptation of lake microbiomes on the Tibetan Plateau	67
Predicting microbial community compositions in wastewater treatment plants using artificial neural networks	66
Microbiome in heritage: how maternal microbiome transmission impacts next generation health	66
BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes	65
Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota	65
Metagenome-assembled genome reveals species and functional composition of Jianghan chicken gut microbiota and isolation of Pediococcus acidilactic with probiotic properties	65
RhoB affects colitis through modulating cell signaling and intestinal microbiome	64
Stable, fluorescent markers for tracking synthetic communities and assembly dynamics	63
Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones	62
Sulfate-dependant microbially induced corrosion of mild steel in the deep sea: a 10-year microbiome study	62
Fecal microbiota transplantation improves chicken growth performance by balancing jejunal Th17/Treg cells	61
Diet prevents the expansion of segmented filamentous bacteria and ileo-colonic inflammation in a model of Crohn’s disease	61
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata	61
A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions	61
Response and resilience of anammox consortia to nutrient starvation	60
Decoding populations in the ocean microbiome	60
Lactobacillus reuteri improves the development and maturation of fecal microbiota in piglets through mother-to-infant microbe and metabolite vertical transmission	60
Vitamin B12 produced by Cetobacterium somerae improves host resistance against pathogen infection through strengthening the interactions within gut microbiota	60
Plant domestication shapes rhizosphere microbiome assembly and metabolic functions	59
Human microbiota research in Africa: a systematic review reveals gaps and priorities for future research	59
Non-antibiotic pharmaceuticals promote conjugative plasmid transfer at a community-wide level	59
Correction: Nepali oral microbiomes reflect a gradient of lifestyles from traditional to industrialized	58
Correction: Chicken jejunal microbiota improves growth performance by mitigating intestinal inflammation	58
The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection	57
Uncovering the genomic basis of symbiotic interactions and niche adaptations in freshwater picocyanobacteria	57
Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome	57
Realising respiratory microbiomic meta-analyses: time for a standardised framework	57
The community ecology perspective of omics data	57
Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis	56
Multi-omics investigation into long-distance road transportation effects on respiratory health and immunometabolic responses in calves	54
Population structure of an Antarctic aquatic cyanobacterium	54
The microbial dark matter and “wanted list” in worldwide wastewater treatment plants	54
Host-microbiota interaction-mediated resistance to inflammatory bowel disease in pigs	54
Metagenomics insights into responses of rhizobacteria and their alleviation role in licorice allelopathy	53
Quantifying functional redundancy in polysaccharide-degrading prokaryotic communities	53
Lose-lose consequences of bacterial community-driven invasions in soil	53
Microbiome multi-omics can accelerate human excrement composting research	52
Host species and habitat shape fish-associated bacterial communities: phylosymbiosis between fish and their microbiome	52
Akkermansia muciniphila improve cognitive dysfunction by regulating BDNF and serotonin pathway in gut-liver-brain axis	52
Four functional profiles for fibre and mucin metabolism in the human gut microbiome	52
Phosphorus availability influences disease-suppressive soil microbiome through plant-microbe interactions	52
The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective	51
Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs	51
Dietary selection of distinct gastrointestinal microorganisms drives fiber utilization dynamics in goats	51
Cross-alteration of murine skin and tick microbiome concomitant with pathogen transmission after Ixodes ricinus bite	51
Reductive acetogenesis is a dominant process in the ruminant hindgut	51
Antibiotic exposure prevents acquisition of beneficial metabolic functions in the preterm infant gut microbiome	51
Surface fungal diversity and several mycotoxin-related genes’ expression profiles during the Lunar Palace 365 experiment	51
Maternal Western diet mediates susceptibility of offspring to Crohn’s-like colitis by deoxycholate generation	51
The fungal microbiota modulate neonatal oxygen-induced lung injury	50
The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children	49
Parabacteroides distasonis regulates the infectivity and pathogenicity of SVCV at different water temperatures	49
Increased genital mucosal cytokines in Canadian women associate with higher antigen-presenting cells, inflammatory metabolites, epithelial barrier disruption, and the depletion of L. crispatus	49
Life-long microbiome rejuvenation improves intestinal barrier function and inflammaging in mice	49
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe	49
Selection processes of Arctic seasonal glacier snowpack bacterial communities	49
Microbiota alterations leading to amino acid deficiency contribute to depression in children and adolescents	49
Multimodal analysis identifies microbiome changes linked to stem cell transplantation-associated diseases	48
Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station	48
Newly isolated Lactobacillus paracasei strain modulates lung immunity and improves the capacity to cope with influenza virus infection	48
TLR4 regulates RORγt+ regulatory T-cell responses and susceptibility to colon inflammation through interaction with Akkermansia muciniphila	48
In-depth characterization of food and environmental microbiomes across different meat processing plants	48
Correction: Characterization of diazotrophic root endophytes in Chinese silvergrass (Miscanthus sinensis)	47
Characterization of two keystone taxa, sulfur-oxidizing, and nitrate-reducing bacteria, by tracking their role transitions in the benzo[a]pyrene degradative microbiome	47
Pet cats may shape the antibiotic resistome of their owner’s gut and living environment	47
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes	47
Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions	47
Microscopic marine invertebrates are reservoirs for cryptic and diverse protists and fungi	46
Correction: Live Akkermansia muciniphila boosts dendritic cell retinoic acid synthesis to modulate IL-22 activity and mitigate colitis in mice	46
Diet at birth is critical for healthy growth, independent of effects on the gut microbiota	46
Effect of a multi-strain probiotic mixture consumption on anxiety and depression symptoms induced in adult mice by postnatal maternal separation	46
Correction: Metagenomic sequencing reveals time, host, and body compartment-specific viral dynamics after lung transplantation	46
Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function	45
Gut microbiome transitions across generations in different ethnicities in an urban setting—the HELIUS study	45
Proportion-based normalizations outperform compositional data transformations in machine learning applications	45
Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil	45
Plastic leachates impair picophytoplankton and dramatically reshape the marine microbiome	45
Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling	44
A simplified synthetic community rescues Astragalus mongholicus from root rot disease by activating plant-induced systemic resistance	44

A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)	44
Beyond bacterial vaginosis: vaginal lactobacilli and HIV risk	43
Physiological versatility of ANME-1 and Bathyarchaeotoa-8 archaea evidenced by inverse stable isotope labeling	43
Host taxonomy and environment shapes insectivore viromes and viral spillover risks in Southwestern China	43
Statistical modeling of gut microbiota for personalized health status monitoring	43
The gut microbiome in patients with Cushing’s disease affects depression- and anxiety-like behavior in mice	43
Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts	43
Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages	43
Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort	42
The hindgut microbiome contributes to host oxidative stress in postpartum dairy cows by affecting glutathione synthesis process	42
Targeted viromes and total metagenomes capture distinct components of bee gut phage communities	42
A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae	42
Rhizosphere phage communities drive soil suppressiveness to bacterial wilt disease	42
Deterministic colonization arises early during the transition of soil bacteria to the phyllosphere and is shaped by plant–microbe interactions	41
Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection	41
Mycorrhiza-mediated recruitment of complete denitrifying Pseudomonas reduces N2O emissions from soil	41
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests	41
Dietary ellagic acid therapy for CNS autoimmunity: Targeting on Alloprevotella rava and propionate metabolism	41
Revealing the composition of the eukaryotic microbiome of oyster spat by CRISPR-Cas Selective Amplicon Sequencing (CCSAS)	41
Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants	41
Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation	40
Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion	40
Circadian dynamics of the teleost skin immune-microbiome interface	40
Microbiota in mesenteric adipose tissue from Crohn’s disease promote colitis in mice	40
Bifidobacterium species associated with breastfeeding alleviate neonatal hyperbilirubinaemia via the gut microbiota-α-linolenic and linoleic acid metabolism-enterohepatic circulation axis	40
Decline of a distinct coral reef holobiont community under ocean acidification	40
Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage	40
Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance	40
Phylogenetically and metabolically diverse active carbon-fixing microbes reside in mangrove sediments	40
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus	40
Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles	40
Mobilome-mediated transcriptional activation of biosynthetic gene clusters and its impact on strain competitiveness in food fermentation microbiomes	40
The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders	40
Bikaverin as a molecular weapon: enhancing Fusarium oxysporum pathogenicity in bananas via rhizosphere microbiome manipulation	39
The multi-kingdom microbiome of the goat gastrointestinal tract	39
Predicting how varying moisture conditions impact the microbiome of dust collected from the International Space Station	39
Relative abundance data can misrepresent heritability of the microbiome	39
A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome	39
Effects of data transformation and model selection on feature importance in microbiome classification data	39
Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis	39
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere	38
Increased methane production associated with community shifts towards Methanocella in paddy soils with the presence of nanoplastics	38
Chicken intestinal microbiota modulation of resistance to nephropathogenic infectious bronchitis virus infection through IFN-I	38
Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium	38
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria	38
Evolutionary diversification and succession of soil huge phages in glacier foreland	38
Mosquito sex and mycobiota contribute to fructose metabolism in the Asian tiger mosquito Aedes albopictus	38
Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station	38
Antibiotic-associated changes in Akkermansia muciniphila alter its effects on host metabolic health	38
Correction: A remarkably diverse and well-organized virus community in a filter-feeding oyster	38
Mouse mammary tumor virus is implicated in severity of colitis and dysbiosis in the IL-10−/− mouse model of inflammatory bowel disease	37
Evaluating urine volume and host depletion methods to enable genome-resolved metagenomics of the urobiome	37
Porcine nasal organoids to model interactions between the swine nasal microbiota and the host	37
Developing whole cell standards for the microbiome field	37
Guts within guts: the microbiome of the intestinal helminth parasite Ascaris suum is derived but distinct from its host	37
Metabolic modeling of the International Space Station microbiome reveals key microbial interactions	37
Human endogenous retrovirus K in the respiratory tract is associated with COVID-19 physiopathology	37
Gut microbiota–derived metabolite 3-idoleacetic acid together with LPS induces IL-35+ B cell generation	36
Destabilization of mutualistic interactions shapes the early heat stress response of the coral holobiont	36
Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome	36
Ningxiang pig-derived lactobacillus reuteri modulates host intramuscular fat deposition via branched-chain amino acid metabolism	36
F. prausnitzii potentially modulates the association between citrus intake and depression	36
Experimental community coalescence sheds light on microbial interactions in soil and restores impaired functions	36
Lactiplantibacillus plantarum FRT4 protects against fatty liver hemorrhage syndrome: regulating gut microbiota and FoxO/TLR-4/NF-κB signaling pathway in laying hens	36
Clean room microbiome complexity impacts planetary protection bioburden	36
Tissue-resident microbiota signature in nasopharyngeal carcinoma	35
Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies	35
Rumen microbiome associates with postpartum ketosis development in dairy cows: a prospective nested case–control study	35
Natural plant disease suppressiveness in soils extends to insect pest control	35
Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring	35
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR	34
Candidate Phyla Radiation (CPR) bacteria from hyperalkaline ecosystems provide novel insight into their symbiotic lifestyle and ecological implications	34
Medium-chain fatty acid triglycerides improve feed intake and oxidative stress of finishing bulls by regulating ghrelin concentration and gastrointestinal tract microorganisms and rumen metabolites	34
Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes	34
Adaptive strategies of Caribbean sponge holobionts beyond the mesophotic zone	34
Vaginal microbiome-host interactions modeled in a human vagina-on-a-chip	34
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics	34
Distinct gut microbiome characteristics and dynamics in patients with Parkinson’s disease based on the presence of premotor rapid-eye movement sleep behavior disorders	34
Selection for environmental variance shifted the gut microbiome composition driving animal resilience	34
Correction: Significant alterations of intestinal symbiotic microbiota induced by intraperitoneal vaccination mediate changes in intestinal metabolism of NEW Genetically Improved Farmed Tilapia (NEW G	34
Interspecies microbiome transplantation recapitulates microbial acquisition in mosquitoes	33
Metabolome-driven microbiome assembly determining the health of ginger crop (Zingiber officinale L. Roscoe) against rhizome rot	33
Analysis of the anaerobic digestion metagenome under environmental stresses stimulating prophage induction	33
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model	33
Zearalenone disturbs the reproductive-immune axis in pigs: the role of gut microbial metabolites	33
Microbiome-driven breeding strategy potentially improves beef fatty acid profile benefiting human health and reduces methane emissions	33
Gut microbiome of helminth-infected indigenous Malaysians is context dependent	32
Resource-dependent biodiversity and potential multi-trophic interactions determine belowground functional trait stability	32
Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria	32
Distributions, interactions, and dynamics of prokaryotes and phages in a hybrid biological wastewater treatment system	32
Bacterial aerobic methane cycling by the marine sponge-associated microbiome	32
Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere	32
Host genetic variation drives the differentiation in the ecological role of the native Miscanthus root-associated microbiome	32
Gene content of seawater microbes is a strong predictor of water chemistry across the Great Barrier Reef	31
Novel bacterial proteolytic and metabolic activity associated with dental erosion-induced oral dysbiosis	31