Microbiome

Article	Citations
Integrated multi-omics analysis reveals the positive leverage of citrus flavonoids on hindgut microbiota and host homeostasis by modulating sphingolipid metabolism in mid-lactation dairy cows consumin	323
Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly	248
Correction: Sodium levels and grazing pressure shape natural communities of the intracellular pathogen Legionella	248
Correction: Gut microbiota-derived propionate mediates the neuroprotective effect of osteocalcin in a mouse model of Parkinson’s disease	236
From dysbiosis to defense: harnessing the gut microbiome in HIV/SIV therapy	231
Microbial community regulation and performance enhancement in gas biofilters by interrupting bacterial communication	222
Blocked conversion of Lactobacillus johnsonii derived acetate to butyrate mediates copper-induced epithelial barrier damage in a pig model	218
Bifidobacterial carbohydrate/nucleoside metabolism enhances oxidative phosphorylation in white adipose tissue to protect against diet-induced obesity	207
Impacts of host genetics on gut microbiome composition in Alzheimer’s disease	195
Colonization during a key developmental window reveals microbiota-dependent shifts in growth and immunity during undernutrition	186
Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils	178
Metabolite-mediated interactions and direct contact between Fusobacterium varium and Faecalibacterium prausnitzii	157
No microorganism was detected in amniotic fluid of healthy pregnancies from the second trimester to the delivery	154
A glimpse of the paleome in endolithic microbial communities	146
Role of nasal microbiota in regulating host anti-influenza immunity in dogs	140
Engrafting gut bacteriophages have potential to modulate microbial metabolism in fecal microbiota transplantation	139
Using strain-resolved analysis to identify contamination in metagenomics data	139
β-Elemonic acid mediated enrichment of Paenibacillus to help Salvia miltiorrhiza Bunge alleviate drought stress	136
Impact of diet in shaping gut virome of grain-fed and grass-fed beef cattle revealed by a comparative metagenomic study	136
Stool energy density is positively correlated to intestinal transit time and related to microbial enterotypes	135
Phylogeny-guided microbiome OTU-specific association test (POST)	133
Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota	131
Effects of melatonin on rumen microorganisms and methane production in dairy cow: results from in vitro and in vivo studies	131
Landscape of the gut archaeome in association with geography, ethnicity, urbanization, and diet in the Chinese population	129
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments	129

Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines	129
Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom	127
Colonocyte-derived lactate promotes E. coli fitness in the context of inflammation-associated gut microbiota dysbiosis	124
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis	118
Microbiota-indole 3-propionic acid-brain axis mediates abnormal synaptic pruning of hippocampal microglia and susceptibility to ASD in IUGR offspring	117
Gut dysbiosis promotes prostate cancer progression and docetaxel resistance via activating NF-κB-IL6-STAT3 axis	113
Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments	113
Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem	112
Gut microbiota induces dysspermatogenesis via microbial-derived phenylacetylglycine in Ggt1-deficient mice	108
H2 generated by fermentation in the human gut microbiome influences metabolism and competitive fitness of gut butyrate producers	108
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes	107
A synbiotic mixture of selected oligosaccharides and bifidobacteria assists murine gut microbiota restoration following antibiotic challenge	104
Rumen microbiota-associated stress alleviation by creatine pyruvate in newly received cattle: a multi-omics study	104
Correction: Inulin diet uncovers complex diet-microbiota-immune cell interactions remodeling the gut epithelium	103
Metaproteomics reveals diet-induced changes in gut microbiome function according to Crohn’s disease location	97
VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution	95
Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis	94
Gut microbiome-derived indole-3-carboxaldehyde promotes intestinal development via AHR-NRF2 signaling in the early-life of chicks	93
Distinguishing diet- and microbe-derived metabolites in the human gut	91
Calcium-containing inorganic immunity booster drives the enrichment of specific root endophytic microbiota against Ralstonia solanacearum	90
Geography, not lifestyle, explains the population structure of free-living and host-associated deep-sea hydrothermal vent snail symbionts	90
Eubacterium siraeum suppresses fat deposition via decreasing the tyrosine-mediated PI3K/AKT signaling pathway in high-fat diet-induced obesity	90
Gut barrier-microbiota imbalances in early life lead to higher sensitivity to inflammation in a murine model of C-section delivery	89
Virome characterization of wild small mammals provides new insight into zoonotic pathogens in West Africa	89
Complementary insights into gut viral genomes: a comparative benchmark of short- and long-read metagenomes using diverse assemblers and binners	88
Characterizing the gut phageome and phage-borne antimicrobial resistance genes in pigs	88
The effect of 3-nitrooxypropanol, a potent methane inhibitor, on ruminal microbial gene expression profiles in dairy cows	88
Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD+	87
Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome	87
Global analysis of the biosynthetic chemical space of marine prokaryotes	86
Gut-derived IL-13 contributes to growth via promoting hepatic IGF-1 production	85
High-resolution metagenomic reconstruction of the freshwater spring bloom	85
Milk oligosaccharide-driven persistence of Bifidobacterium pseudocatenulatum modulates local and systemic microbial metabolites upon synbiotic treatment in conventionally colonized mice	84
Water–vapor treatment of shower systems in healthcare facilities: reshaping built-environment microbiomes to improve Legionella control and protect at-risk patients	84
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics	83
Determination of antibiotic resistance patterns and genotypes of Escherichia coli isolated from wild birds	83
Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments	81
Biogeographical survey of soil microbiomes across sub-Saharan Africa: structure, drivers, and predicted climate-driven changes	81
Gut microbiota-derived ursodeoxycholic acid alleviates low birth weight-induced colonic inflammation by enhancing M2 macrophage polarization	80
Gut metabolites predict Clostridioides difficile recurrence	80
Enrichment of vitamin B12-producing Porphyrobacter in the phycosphere microbiome promotes microalgal stress adaptation to antibiotic exposure	80
Non-antibiotic pharmaceuticals promote conjugative plasmid transfer at a community-wide level	79
Gut microbiome-metabolome interactions predict host condition	79
Regulation on microbial composition,serotonergic synapse, and apoptotic signaling pathway by extracts fromSonchus brachyotus DC. (SBE) to improve ethanol-induced acute oxidative stress in mice	79
Fecal microbiota transplantation improves chicken growth performance by balancing jejunal Th17/Treg cells	77
Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes	77
Stable, fluorescent markers for tracking synthetic communities and assembly dynamics	77
Reduced legacy precipitation decreases microbial community growth efficiency and alters soil organic carbon in a California grassland	75
Gut microbiota-derived short-chain fatty acids promote follicular maturation via gWAT-ovary axis in mammals	75
RamEx: an R package for high-throughput microbial ramanome analyses with accurate quality assessment	74

RhoB affects colitis through modulating cell signaling and intestinal microbiome	74
Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota	73
Interactions with native microbial keystone taxa enhance the biocontrol efficiency of Streptomyces	73
BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes	72
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata	72
Characterization of age-related changes in the gut microbiome and metabolome of Kunming dogs and their associations with police performance	71
Diet prevents the expansion of segmented filamentous bacteria and ileo-colonic inflammation in a model of Crohn’s disease	71
Ocular mucosal homeostasis of teleost fish provides insight into the coevolution between microbiome and mucosal immunity	71
Lactobacillus reuteri improves the development and maturation of fecal microbiota in piglets through mother-to-infant microbe and metabolite vertical transmission	71
Microbiome in heritage: how maternal microbiome transmission impacts next generation health	70
Predicting microbial community compositions in wastewater treatment plants using artificial neural networks	68
Plasmids as persistent genetic reservoirs of bacterial defense systems in wastewater treatment	68
Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones	68
Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions	68
Decoding populations in the ocean microbiome	67
Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem	66
Correction: Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments	65
The role of the oral microbiota in the causal effect of adjunctive antibiotics on clinical outcomes in stage III–IV periodontitis patients	65
Vitamin B12 produced by Cetobacterium somerae improves host resistance against pathogen infection through strengthening the interactions within gut microbiota	65
A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions	64
Plant domestication shapes rhizosphere microbiome assembly and metabolic functions	63
Population structure of an Antarctic aquatic cyanobacterium	62
Correction: Nepali oral microbiomes reflect a gradient of lifestyles from traditional to industrialized	62
Functional traits and adaptation of lake microbiomes on the Tibetan Plateau	62
Correction: Chicken jejunal microbiota improves growth performance by mitigating intestinal inflammation	62
Metagenome-assembled genome reveals species and functional composition of Jianghan chicken gut microbiota and isolation of Pediococcus acidilactic with probiotic properties	62
Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis	61
Multi-omics investigation into long-distance road transportation effects on respiratory health and immunometabolic responses in calves	61
Experimental insights in taxon-specific functional responses to droughts in glacier-fed stream biofilms	61
Realising respiratory microbiomic meta-analyses: time for a standardised framework	61
Synthetic community derived from the root core microbes of a desert shrub Caragana korshinskii enhances wheat drought tolerance	61
Lose-lose consequences of bacterial community-driven invasions in soil	60
Uncovering the genomic basis of symbiotic interactions and niche adaptations in freshwater picocyanobacteria	60
Quantifying functional redundancy in polysaccharide-degrading prokaryotic communities	60
The microbial dark matter and “wanted list” in worldwide wastewater treatment plants	60
Akkermansia muciniphila improve cognitive dysfunction by regulating BDNF and serotonin pathway in gut-liver-brain axis	59
Metagenomics insights into responses of rhizobacteria and their alleviation role in licorice allelopathy	59
Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome	59
Characterising gut microbiome dysbiosis in diarrhoea calves from multiple farms in Inner Mongolia using 16S and metagenomics	59
Phosphorus availability influences disease-suppressive soil microbiome through plant-microbe interactions	58
Remodelling of cystic fibrosis respiratory microbiota in response to extended elexacaftor–tezacaftor–ivacaftor therapy	58
Ammonia oxidation and recalcitrant carbon degradation fuel mixotrophic growth in the symbiont community of a deep-sea sponge	58
Host-microbiota interaction-mediated resistance to inflammatory bowel disease in pigs	58
Host species and habitat shape fish-associated bacterial communities: phylosymbiosis between fish and their microbiome	58
Cross-alteration of murine skin and tick microbiome concomitant with pathogen transmission after Ixodes ricinus bite	57
Surface fungal diversity and several mycotoxin-related genes’ expression profiles during the Lunar Palace 365 experiment	57
Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station	57
The community ecology perspective of omics data	57
Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions	56
Parabacteroides distasonis regulates the infectivity and pathogenicity of SVCV at different water temperatures	56
Ethical design as a prerequisite for translational microbiome science	56
Ambient temperature affects the composition of the vaginal microbiome, and temperature-sensitive vaginal microbes influence assisted reproductive technology outcomes	56
Toward ethical human microbiome research: improving health through radical interdisciplinary and intercultural co-laboration	56
Modulating the gut-bladder axis: fecal transplantation protects antibiotic-treated mice from E. coli cystitis via the Ahr/Prg4 pathway	55
Biochanin A improves nitrogen utilization efficiency by regulating ruminal microbial community in dairy goats	55
Four functional profiles for fibre and mucin metabolism in the human gut microbiome	55
Reductive acetogenesis is a dominant process in the ruminant hindgut	55
Microbiome multi-omics can accelerate human excrement composting research	54
Maternal Western diet mediates susceptibility of offspring to Crohn’s-like colitis by deoxycholate generation	54
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes	54
Correction: Characterization of diazotrophic root endophytes in Chinese silvergrass (Miscanthus sinensis)	54
The fungal microbiota modulate neonatal oxygen-induced lung injury	54
Multimodal analysis identifies microbiome changes linked to stem cell transplantation-associated diseases	53
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe	53
Microbial decomposer diversity and metabolic function during the decomposition of brine shrimp carcasses in a saline lake	53
Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs	53
Microbiota-gut-muscle axis shapes fish muscle texture by regulating collagen synthesis	53
Characterization of two keystone taxa, sulfur-oxidizing, and nitrate-reducing bacteria, by tracking their role transitions in the benzo[a]pyrene degradative microbiome	52
Selection processes of Arctic seasonal glacier snowpack bacterial communities	52
Pet cats may shape the antibiotic resistome of their owner’s gut and living environment	52
Dietary selection of distinct gastrointestinal microorganisms drives fiber utilization dynamics in goats	52
The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective	52
Effect of a multi-strain probiotic mixture consumption on anxiety and depression symptoms induced in adult mice by postnatal maternal separation	51
TLR4 regulates RORγt+ regulatory T-cell responses and susceptibility to colon inflammation through interaction with Akkermansia muciniphila	51
The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children	51
In-depth characterization of food and environmental microbiomes across different meat processing plants	51
Increased genital mucosal cytokines in Canadian women associate with higher antigen-presenting cells, inflammatory metabolites, epithelial barrier disruption, and the depletion of L. crispatus	51
Enhancing the fiber degradation efficiency in dairy cattle rumen through engineered bacterial communities	50
Diet at birth is critical for healthy growth, independent of effects on the gut microbiota	50
Microbiota alterations leading to amino acid deficiency contribute to depression in children and adolescents	50

Targeted viromes and total metagenomes capture distinct components of bee gut phage communities	50
Correction: Live Akkermansia muciniphila boosts dendritic cell retinoic acid synthesis to modulate IL-22 activity and mitigate colitis in mice	50
Newly isolated Lactobacillus paracasei strain modulates lung immunity and improves the capacity to cope with influenza virus infection	50
Life-long microbiome rejuvenation improves intestinal barrier function and inflammaging in mice	50
Meta-organism gene expression reveals that the impact of nitrate enrichment on coral larvae is mediated by their associated Symbiodiniaceae and prokaryotic assemblages	50
Antibiotic exposure prevents acquisition of beneficial metabolic functions in the preterm infant gut microbiome	50
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests	49
Host taxonomy and environment shapes insectivore viromes and viral spillover risks in Southwestern China	49
Microscopic marine invertebrates are reservoirs for cryptic and diverse protists and fungi	49
Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function	49
Physiological versatility of ANME-1 and Bathyarchaeotoa-8 archaea evidenced by inverse stable isotope labeling	48
Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants	48
Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts	48
The hindgut microbiome contributes to host oxidative stress in postpartum dairy cows by affecting glutathione synthesis process	48
Limosilactobacillus reuteri enhances production performance and ovarian function via modulation of the gut-ovary axis in laying hens	48
Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil	48
Plastic leachates impair picophytoplankton and dramatically reshape the marine microbiome	48
Dietary ellagic acid therapy for CNS autoimmunity: Targeting on Alloprevotella rava and propionate metabolism	47
Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort	47
Deterministic colonization arises early during the transition of soil bacteria to the phyllosphere and is shaped by plant–microbe interactions	47
Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling	47
Multi-omics analysis reveals the pathobiome-host interactions in the bleaching disease of the seaweed Saccharina japonica	47
Statistical modeling of gut microbiota for personalized health status monitoring	47
Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection	47
Proportion-based normalizations outperform compositional data transformations in machine learning applications	47
The interactive relationship between Fusobacterium necrophorum, Bacteroides pyogenes, and Porphyromonas levii in driving inflammatory uterine disease	47
The gut microbiome in patients with Cushing’s disease affects depression- and anxiety-like behavior in mice	47
Mycorrhiza-mediated recruitment of complete denitrifying Pseudomonas reduces N2O emissions from soil	46
Decline of a distinct coral reef holobiont community under ocean acidification	46
Gut microbiome transitions across generations in different ethnicities in an urban setting—the HELIUS study	46
Emerging crops and plant growth-promoting bacteria (PGPB): a synergistic approach to climate-resilient agriculture	46
Comparative analysis of rumen metagenomes with dietary supplementation of 3-nitrooxypropanol revealed divergent modes of action in hydrogen metabolism and reductant pathways between beef and dairy cat	46
Rhizosphere phage communities drive soil suppressiveness to bacterial wilt disease	46
Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion	45
Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station	45
Increased methane production associated with community shifts towards Methanocella in paddy soils with the presence of nanoplastics	45
Down the drain: exploring wastewater’s role in coastal microbiome transformations	44
Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage	44
Intracellular microbial signals in the gastrointestinal tract of dairy cattle	44
Mobilome-mediated transcriptional activation of biosynthetic gene clusters and its impact on strain competitiveness in food fermentation microbiomes	44
Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation	44
Bifidobacterium species associated with breastfeeding alleviate neonatal hyperbilirubinaemia via the gut microbiota-α-linolenic and linoleic acid metabolism-enterohepatic circulation axis	44
A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome	44
Predicting how varying moisture conditions impact the microbiome of dust collected from the International Space Station	44
Phylogenetically and metabolically diverse active carbon-fixing microbes reside in mangrove sediments	43
Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis	43
Effects of data transformation and model selection on feature importance in microbiome classification data	43
Phosphorus availability drives rhizosphere metabolite-microbial community interactions to modulate cucumber susceptibility to Fusarium wilt	43
Relative abundance data can misrepresent heritability of the microbiome	43
The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders	43
Bikaverin as a molecular weapon: enhancing Fusarium oxysporum pathogenicity in bananas via rhizosphere microbiome manipulation	43
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere	42
The multi-kingdom microbiome of the goat gastrointestinal tract	42
Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles	42
Beyond borders: plasmids drive a shared antibiotic resistome in European urban water systems	42
Porcine nasal organoids to model interactions between the swine nasal microbiota and the host	41
F. prausnitzii potentially modulates the association between citrus intake and depression	41
Distinct gut microbiome characteristics and dynamics in patients with Parkinson’s disease based on the presence of premotor rapid-eye movement sleep behavior disorders	41
Gut microbiota variation drives differential performance in leaf beetles across host plants	41
Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring	40
Guts within guts: the microbiome of the intestinal helminth parasite Ascaris suum is derived but distinct from its host	40
Periodontitis salivary microbiota exacerbates colitis by CXCL3 derived from gut microbiota-induced macrophages	40
Mosquito sex and mycobiota contribute to fructose metabolism in the Asian tiger mosquito Aedes albopictus	40
Destabilization of mutualistic interactions shapes the early heat stress response of the coral holobiont	40
Mouse mammary tumor virus is implicated in severity of colitis and dysbiosis in the IL-10−/− mouse model of inflammatory bowel disease	40
Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium	40
Evolutionary diversification and succession of soil huge phages in glacier foreland	40
Experimental community coalescence sheds light on microbial interactions in soil and restores impaired functions	40
Correction: A remarkably diverse and well-organized virus community in a filter-feeding oyster	40
Ningxiang pig-derived lactobacillus reuteri modulates host intramuscular fat deposition via branched-chain amino acid metabolism	40
Metabolic modeling of the International Space Station microbiome reveals key microbial interactions	39
Chicken intestinal microbiota modulation of resistance to nephropathogenic infectious bronchitis virus infection through IFN-I	39
Natural plant disease suppressiveness in soils extends to insect pest control	39
Rumen microbiome associates with postpartum ketosis development in dairy cows: a prospective nested case–control study	39
Integrative analysis of the mouse cecal microbiome across diet, age, and weight in the diverse BXD population	39
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR	39
Developing whole cell standards for the microbiome field	39
Curcumin modulates hepatic pyroptosis-autophagy crosstalk induced by aflatoxin B1 via rumen microbiota-blood-liver axis	38
Antibiotic-associated changes in Akkermansia muciniphila alter its effects on host metabolic health	38
Lactiplantibacillus plantarum FRT4 protects against fatty liver hemorrhage syndrome: regulating gut microbiota and FoxO/TLR-4/NF-κB signaling pathway in laying hens	38
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics	38
Integrated multi-omics reveals Enterococcus faecalis JM263 alleviates high-concentrate diet-induced hepatic injury via the gut-liver axis in goats	38
Evaluating urine volume and host depletion methods to enable genome-resolved metagenomics of the urobiome	38
Tissue-resident microbiota signature in nasopharyngeal carcinoma	38
Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies	38
Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes	38
Correction: Significant alterations of intestinal symbiotic microbiota induced by intraperitoneal vaccination mediate changes in intestinal metabolism of NEW Genetically Improved Farmed Tilapia (NEW G	38
Estrogen receptor β deficiency impairs gut microbiota: a possible mechanism of IBD-induced anxiety-like behavior	37
Gut microbiome of helminth-infected indigenous Malaysians is context dependent	37
Adaptive strategies of Caribbean sponge holobionts beyond the mesophotic zone	37
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model	37
Bacterial aerobic methane cycling by the marine sponge-associated microbiome	37
Selection for environmental variance shifted the gut microbiome composition driving animal resilience	37
Distributions, interactions, and dynamics of prokaryotes and phages in a hybrid biological wastewater treatment system	37
Abelmoschus Manihot flowers inhibit dysbiotic Enterobacteriaceae expansion by promoting Clostridium bolteae-mediated hypoxia restoration	37