OOIR: Observatory of International Research

Papers

(The H4-Index of GigaScience is 27. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
The curse and blessing of abundance—the evolution of drug interaction databases and their impact on drug network analysis	229
DivBrowse—interactive visualization and exploratory data analysis of variant call matrices	93
ntsm: an alignment-free, ultra-low-coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection	85
Protein–protein and protein–nucleic acid binding site prediction via interpretable hierarchical geometric deep learning	76
MBGC: Multiple Bacteria Genome Compressor	70
Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework	66
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources	62
The probability of edge existence due to node degree: a baseline for network-based predictions	61
Reducing skin microbiome exposure impacts through swine farm biosecurity	59
Current status of global conservation and characterisation of wild and cultivated Brassicaceae genetic resources	49
Hecatomb: an integrated software platform for viral metagenomics	47
Qiber3D—an open-source software package for the quantitative analysis of networks from 3D image stacks	46
CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome	46
Preventing dataset shift from breaking machine-learning biomarkers	38
A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)	37
FAIR data station for lightweight metadata management and validation of omics studies	35
Correction to: Antibiotic resistance genes are differentially mobilized according to resistance mechanism	35
A decade of GigaScience: A perspective on conservation genetics	35
CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning	35
Dual-Alpha: a large EEG study for dual-frequency SSVEP brain–computer interface	34
Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq	32
The Nencki-Symfonia electroencephalography/event-related potential dataset: Multiple cognitive tasks and resting-state data collected in a sample of healthy adults	31
scMAPA: Identification of cell-type–specific alternative polyadenylation in complex tissues	31
X-ray microtomography imaging of craniofacial hard tissues in selected reptile species with different types of dentition	31
Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis	30

A Case for estradiol: younger brains in women with earlier menarche and later menopause	29
Characteristics and filtering of low-frequency artificial short deletion variations based on nanopore sequencing	27
gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes	27