Biology Open

Papers
(The TQCC of Biology Open is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
Cardiac myosin super relaxation (SRX): a perspective on fundamental biology, human disease and therapeutics55
Molecular mechanisms of neurodegeneration in the entorhinal cortex that underlie its selective vulnerability during the pathogenesis of Alzheimer's disease42
Specificity and off-target effects of AAV8-TBG viral vectors for the manipulation of hepatocellular gene expression in mice33
BMP-treated human embryonic stem cells transcriptionally resemble amnion cells in the monkey embryo32
Quantified growth of the human embryonic heart30
Efficient and crucial quality control of HAP1 cell ploidy status28
Uncharted routes: exploring the relevance of auxin movement via plasmodesmata25
RNA-Seq reveals changes in human placental metabolism, transport and endocrinology across the first–second trimester transition23
A versatile, automated and high-throughput drug screening platform for zebrafish embryos23
Beyond bold versus shy: Zebrafish exploratory behavior falls into several behavioral clusters and is influenced by strain and sex20
Three-dimensional model of glioblastoma by co-culturing tumor stem cells with human brain organoids20
Recent developments of tools for genome and metabolome studies in basidiomycete fungi and their application to natural product research18
Local adaptation in thermal tolerance for a tropical butterfly across ecotone and rainforest habitats18
Genome wide association study for the identification of genes associated with tail fat deposition in Chinese sheep breeds18
Redundant functions of the SLC5A transporters Rumpel, Bumpel, and Kumpel in ensheathing glial cells17
The LRRK2 signaling network converges on a centriolar phospho-Rab10/RILPL1 complex to cause deficits in centrosome cohesion and cell polarization17
Developmental disorders caused by haploinsufficiency of transcriptional regulators: a perspective based on cell fate determination16
CD47 differentially regulates white and brown fat function15
ARL3 and ARL13B GTPases participate in distinct steps of INPP5E targeting to the ciliary membrane15
Basement membrane dynamics and mechanics in tissue morphogenesis15
Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world14
Auxin confers protection against ER stress in Caenorhabditis elegans14
Conditional targeting of phosphatidylserine decarboxylase to lipid droplets14
Motion: enhancing signals and concealing cues14
Bisphenol A promotes stress granule assembly and modulates the integrated stress response14
Stability of amino acids and related amines in human serum under different preprocessing and pre-storage conditions based on iTRAQ®-LC-MS/MS13
Altered germline cyst formation and oogenesis in Tex14 mutant mice13
20-hydroxyecdysone (20E) signaling regulates amnioserosa morphogenesis during Drosophila dorsal closure: EcR modulates gene expression in a complex with the AP-1 subunit, Jun13
A Caenorhabditis elegans behavioral assay distinguishes early stage prostate cancer patient urine from controls13
The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish13
Influence of weighted downhill running training on serial sarcomere number and work loop performance in the rat soleus12
Palmitoylated small GTPase ARL15 is translocated within Golgi network during adipogenesis12
Actin cytoskeleton in angiogenesis12
Presynaptic HCN channels constrain GABAergic synaptic transmission in pyramidal cells of the medial prefrontal cortex12
KDM5A and KDM5B histone-demethylases contribute to HU-induced replication stress response and tolerance11
Efficient induction and sustenance of pluripotent stem cells from bovine somatic cells11
Computational anatomy and geometric shape analysis enables analysis of complex craniofacial phenotypes in zebrafish11
Auxin treatment increases lifespan in Caenorhabditis elegans11
Eye morphogenesis in the blind Mexican cavefish11
Synovial joint cavitation initiates with microcavities in interzone and is coupled to skeletal flexion and elongation in developing mouse embryo limbs10
Convergent acoustic community structure in South Asian dry and wet grassland birds10
Soluble receptor for advanced glycation end products protects from ischemia- and reperfusion-induced acute kidney injury10
Muscle forces and the demands of human walking10
Cerebral organoids in primary progressive multiple sclerosis reveal stem cell and oligodendrocyte differentiation defect10
RGS5: a novel role as a hypoxia-responsive protein that suppresses chemokinetic and chemotactic migration in brain pericytes10
Quantitative analysis of signaling responses during mouse primordial germ cell specification10
Evaluation of ellagic acid and gallic acid as efflux pump inhibitors in strains of Staphylococcus aureus9
High glucose induces Nox4 expression and podocyte apoptosis through the Smad3/ezrin/PKA pathway9
Variations in oxidative stress and antioxidant defense level during different phases of hibernation in common Asian toad,Duttaphrynus melanostictus9
Effect of heterogeneous substrate adhesivity of follower cells on speed and tension profile of leader cells in primary keratocyte collective cell migration9
Pigment pattern morphospace ofDaniofishes: evolutionary diversification and mutational effects9
Connecting different heart diseases through intercellular communication9
Design of a 3D printed, motorized, uniaxial cell stretcher for microscopic and biochemical analysis of mechanotransduction9
Biophysical and biochemical properties of Deup1 self-assemblies: a potential driver for deuterosome formation during multiciliogenesis9
Myotonic dystrophy type 1 embryonic stem cells show decreased myogenic potential, increased CpG methylation at the DMPK locus and RNA mis-splicing8
Validating accelerometry-derived proxies of energy expenditure using the doubly labelled water method in the smallest penguin species8
The Drosophila orthologue of the primary ciliary dyskinesia-associated gene, DNAAF3, is required for axonemal dynein assembly8
Smoking flies: testing the effect of tobacco cigarettes on heart function ofDrosophila melanogaster8
A glucose-supplemented diet enhances gut barrier integrity in Drosophila8
Zebrafish embryos hatch early in response to chemical and mechanical indicators of predation risk, resulting in underdeveloped swimming ability of hatchling larvae8
Lifespan and ROS levels in different Drosophila melanogaster strains after 24 h hypoxia exposure8
Establishment of a novel protocol for formalin-fixed paraffin-embedded organoids and spheroids8
Phenotype assessment for neurodegenerative murine models with ataxia and application to Niemann–Pick disease, type C18
The importance of considering regulatory domains in genome-wide analyses – the nearest gene is often wrong!8
Apoptosis is a generator of Wnt-dependent regeneration and homeostatic cell renewal in the ascidian Ciona8
Requirement for STAT3 and its target, TFCP2L1, in self-renewal of naïve pluripotent stem cells in vivo and in vitro8
Tissue-specific transcriptome profiles identify functional differences key to understanding whole plant response to life in variable salinity8
The uncoating of EV71 in mature late endosomes requires CD-M6PR8
Modulation of retinoid-X-receptors differentially regulates expression of apolipoprotein genes apoc1 and apoeb by zebrafish microglia8
Src family kinases inhibit differentiation of intestinal epithelial cells through the Hippo effector YAP17
Heart rate and startle responses in diving, captive harbour porpoises (Phocoena phocoena) exposed to transient noise and sonar7
Fracture biomechanics influence local and systemic immune responses in a murine fracture-related infection model7
Serotonin: an overlooked regulator of endocytosis and endosomal sorting?7
Regulation of NANOG and SOX2 expression by activin A and a canonical WNT agonist in bovine embryonic stem cells and blastocysts7
Downstream events initiated by expression of FSHD-associated DUX4: Studies of nucleocytoplasmic transport, γH2AX accumulation, and Bax/Bak-dependence7
Perinatal exposure to synergistic multiple stressors leads to cellular and behavioral deficits mimicking Schizophrenia-like pathology7
DNMT1 is a negative regulator of osteogenesis7
Tight junction stabilization prevents HepaRG cell death in drug-induced intrahepatic cholestasis7
MicroRNA-9-5p inhibits proliferation and induces apoptosis of human hypertrophic scar fibroblasts through targeting peroxisome proliferator-activated receptor β7
Orally administered branaplam does not impact neurogenesis in juvenile mice, rats, and dogs7
Transduction of rat and human adipose-tissue derived mesenchymal stromal cells by adeno-associated viral vector serotype DJ7
Associative learning in larval and adultDrosophilais impaired by the dopamine-synthesis inhibitor 3-Iodo-L-tyrosine7
A nematode-derived, mitochondrial stress signaling-regulated peptide exhibits broad antibacterial activity7
The dorsal blastopore lip is a source of signals inducing planar cell polarity in the Xenopus neural plate7
Mutations in Drosophila tRNA processing factors cause phenotypes similar to Pontocerebellar Hypoplasia6
Patterns of variations in dorsal colouration of the Italian wall lizard Podarcis siculus6
A kinase translocation reporter reveals real-time dynamics of ERK activity in Drosophila6
A mouse model displays host and bacterial strain differences in Aerococcus urinae urinary tract infection6
A guide to preprinting for early-career researchers6
Mutations in the splicing regulator Prp31 lead to retinal degeneration in Drosophila6
Using CRISPR/Cas9 to identify genes required for mechanosensory neuron development and function6
A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe syndrome6
Visualization of X chromosome reactivation in mouse primordial germ cells in vivo6
Energetics of whiskered bats in comparison to other bats of the family Vespertilionidae6
Interaction between Discs large and Pins/LGN/GPSM2: a comparison across species6
Mummichog gill and operculum exhibit functionally consistent claudin-10 paralog profiles and Claudin-10c hypersaline response6
Alone in a crowd: effect of a nonfunctional lateral line on expression of the social hormone parathyroid hormone 26
Antimicrobial peptide expression in the cockroach gut during enterobacterial infection is specific and influenced by type III secretion6
MonitoringSchizosaccharomyces pombegenome stress by visualizing end-binding protein Ku6
Viral species differentially influence macronutrient preferences based on honey bee genotype6
Deep learning enabled multi-organ segmentation of mouse embryos6
Multiple neural bHLHs ensure the precision of a neuronal specification event in Caenorhabditis elegans6
Developmental expression patterns of toolkit genes in male accessory gland ofDrosophilaparallels those of mammalian prostate6
Zebrafish models of alx-linked frontonasal dysplasia reveal a role for Alx1 and Alx3 in the anterior segment and vasculature of the developing eye6
A Year at the Forefront of Engineering Photosynthesis6
GRASP55 restricts early-stage autophagy and regulates spatial organization of the early secretory network6
Postnatal expression profiles of atypical cadherin FAT1 suggest its role in autism6
Exocrine pancreas proteases regulate β-cell proliferation in zebrafish ciliopathy models and in murine systems6
Oviductal fluid counterbalances the negative effect of high temperature on sperm in an ectotherm model6
Pressure-induced changes on the morphology and gene expression in mammalian cells6
Dynein-2–driven intraciliary retrograde trafficking indirectly requires multiple interactions of IFT54 in the IFT-B complex with the dynein-2 complex5
Arf GTPase-activating proteins SMAP1 and AGFG2 regulate the size of Weibel-Palade bodies and exocytosis of von Willebrand factor5
Factors affecting gestation periods in elasmobranch fishes5
Construction of a human hTERT RPE-1 cell line with inducible Cre for editing of endogenous genes5
Influence of maternal diet on offspring survivorship, growth, and reproduction in a sheetweb spider5
Dorso-ventral heterogeneity in tracheal basal stem cells5
Research culture: science from bench to society5
BBQ methods: streamlined workflows for bacterial burden quantification in infected cells by confocal microscopy5
Rhoptry kinase protein 39 (ROP39) is a novel factor that recruits host mitochondria to the parasitophorous vacuole of Toxoplasma gondii5
The continuing challenge of paper-mills to publishing in the biological sciences5
Comparative transcriptomics of tropical woody plants supports fast and furious strategy along the leaf economics spectrum in lianas5
Revisiting the flight dynamics of take-off of a butterfly: experiments and CFD simulations for a cabbage white butterfly5
Effects of particle size and thickness of quartz sand on the webbed foot kinematics of mallard (Anas platyrhynchos)5
Single-cell sequencing reveals the potential oncogenic expression atlas of human iPSC-derived cardiomyocytes5
The thermal dependence and molecular basis of physiological color change in Takydromus septentrionalis (Lacertidae)5
Vitamin D receptor absence does not enhance intestinal tumorigenesis in ApcPirc/+rats5
Dirichlet process mixture models for single-cell RNA-seq clustering5
Three functional polymorphisms in CCDC170 were associated with osteoporosis phenotype5
Development of a highly pulmonary metastatic orthotopic renal cell carcinoma murine model5
Metabolic scaling of fire ants (Solenopsis invicta) engaged in collective behaviors5
Actin filaments accumulated in the nucleus remain in the vicinity of condensing chromosomes in the zebrafish early embryo5
Drosophila hemocytes recognize lymph gland tumors of mxc mutants and activate the innate immune pathway in a reactive oxygen species-dependent manner5
Investigating the effect of cholinergic and adrenergic blocking agents on maternal-fetal heart rates and their interactions in mice fetuses5
Modulation of mitochondrial nucleoid structure during aging and by mtDNA content in Drosophila5
EPCAM and TROP2 share a role in claudin stabilization and development of intestinal and extraintestinal epithelia in mice5
Focal sources of FGF-10 promote the buckling morphogenesis of the embryonic airway epithelium5
Vitamin A cycle byproducts explain retinal damage and molecular changes thought to initiate retinal degeneration4
Valproic acid affects neurogenesis during early optic tectum development in zebrafish4
Integrated analysis of cell shape and movement in moving frame4
Initial parasitic behaviour of the temporary social parasitic ant Polyrhachis lamellidens can be induced by host-like cuticles in laboratory environment4
Kinetics of Arf1 inactivation regulates Golgi organisation and function in non-adherent fibroblasts4
Quantitative evaluation of individual food intake by insectivorous vespertilionid bats (Chiroptera, Vespertilionidae)4
Insights into in vivo adipocyte differentiation through cell-specific labeling in zebrafish4
Mapping the transcriptomic changes of endothelial compartment in human hippocampus across aging and mild cognitive impairment4
MiR-145-5p overexpression rejuvenates aged adipose stem cells and accelerates wound healing4
Odours of cancerous mouse congeners: detection and attractiveness4
Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish4
A deep-dive into fictive locomotion – a strategy to probe cellular activity during speed transitions in fictively swimming zebrafish larvae4
Dissecting dynamics and differences of selective pressures in the evolution of human pigmentation4
Effects of mechanical stimulation on metabolomic profiles of SW1353 chondrocytes: shear and compression4
Ctdp1 deficiency leads to early embryonic lethality in mice and defects in cell cycle progression in MEFs4
Unique histological features of the tail skin of cotton rat (Sigmodon hispidus) related to caudal autotomy4
Chromatin dynamics through mouse preimplantation development revealed by single molecule localisation microscopy4
A new method to localise and quantify oxidative stress in live juvenile mussels4
Phosphosites of the yeast centrosome component Spc110 contribute to cell cycle progression and mitotic exit4
A Year at the Forefront of Bacterial Defense Systems Against Neutrophilic Oxidants4
Ocean acidification affects the expression of neuroplasticity and neuromodulation markers in seabream4
An experimental test of chronic traffic noise exposure on parental behaviour and reproduction in zebra finches4
Development of a cypovirus protein microcrystal-encapsulated Bacillus thuringiensis UV-tolerant and mosquitocidal δ-endotoxin4
Postnatal depletion of maternal cells biases T lymphocytes and natural killer cells’ profiles toward early activation in the spleen4
Exploiting the potential of lung stem cells to develop pro-regenerative therapies4
Interdomain interactions regulate the localization of a lipid transfer protein at ER-PM contact sites4
Morpho-functional comparison of differentiation protocols to create iPSC-derived cardiomyocytes4
What drives mixed-species shoaling among wild zebrafish? The roles of predators, food access, abundance of conspecifics and familiarity4
Coilin as a regulator of NF-kB mediated inflammation in preeclampsia4
A Year at the Forefront of Proteostasis and Aging4
Light-sheet microscopy reveals dorsoventral asymmetric membrane dynamics ofAmoeba proteusduring pressure-driven locomotion4
Modelling the structure of Short Gastrulation and generation of a toolkit for studying its function in Drosophila4
Genetically inducible and reversible zebrafish model of systemic inflammation4
Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis4
The genomic basis of host and vector specificity in non-pathogenic trypanosomatids4
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