Biology Open

Article	Citations
Cdc48 and its co-factor Ufd1 extract CENP-A from centromeric chromatin and can induce chromosome elimination in the fission yeast Schizosaccharomyces pombe	55
First person – Amy Irving	33
First person – Rajeshwari B. R.	32
Retraction: Overexpression of long non-coding RNA SBF2-AS1 promotes cell progression in esophageal squamous cell carcinoma (ESCC) by repressing miR-494 to up-regulate PFN2 expression	30
First person – Yuta Koui	25
Alpha-T-catenin is expressed in peripheral nerves as a constituent of Schwann cell adherens junctions	23
Future Leaders to Watch – Christopher Toepfer and Manuel Schmid	22
First person – Kelly Diamond	21
Optimization of an in situ liver perfusion method to evaluate hepatic function of juvenile American alligators (Alligator mississippiensis)	18
First person – Flavie Ader	18
The matrix in focus: new directions in extracellular matrix research from the 2021 ASMB hybrid meeting	17
Quantitative analysis of signaling responses during mouse primordial germ cell specification	17
Saccharomyces cerevisiae deficient in the early anaphase release of Cdc14 can traverse anaphase I without ribosomal DNA disjunction and successfully complete meiosis	16
Correction: IL-31 plays dual roles in lung inflammation in an OVA-induced murine asthma model	15
First person – Kayla Mills	15
Early-career researchers: answering the most important scientific questions of our time	15
Mummichog gill and operculum exhibit functionally consistent claudin-10 paralog profiles and Claudin-10c hypersaline response	14
An alternative and effective method for extracting skeletal organic matrix adapted to the red coral Corallium rubrum	14
Sequential events during the quiescence to proliferation transition establish patterns of follicle cell differentiation in the Drosophila ovary	14
Exploring stem cell frontiers: definitions, challenges, and perspectives for regenerative medicine	14
First person – Hungtang Ko	13
Antibodies targeting the European lobster (Palinurus elephas) vitellogenin developed by mRNA isolation and in-silico-designed antigenic peptides	13
First person – Xin Huang	13
First person – Kazuko Okamoto	13
Locomotor kinematics on sand versus vinyl flooring in the sidewinder rattlesnake Crotalus cerastes	12

The extracellular matrix controls stem cell specification and crypt morphology in the developing and adult mouse gut	12
Manipulation of the nuclear envelope-associated protein SLAP during mammalian brain development affects cortical lamination and exploratory behavior	12
Single target acuity for moving targets in the common sunfish (Lepomis gibbosus)	12
Beyond barriers, towards diversity: how hybrid student conferences can drive accessibility	12
Glucose to lactate shift reprograms CDK-dependent mitotic decisions and its communication with MAPK Sty1 in Schizosaccharomyces pombe	11
Visualization of the biphasic calcium wave during fertilization in Caenorhabditis elegans using a genetically encoded calcium indicator	11
Vitamin A cycle byproducts explain retinal damage and molecular changes thought to initiate retinal degeneration	11
First person – Francesca Mastropasqua and Marika Oksanen	11
First person – Sophie Johnson	11
The dorsal blastopore lip is a source of signals inducing planar cell polarity in the Xenopus neural plate	10
The threat of a non-native oligochaete species in Iran's freshwater: Assessment of the diversity and origin of Eiseniella tetraedra (Savigny, 1826) and its response to climate change	10
Divalent metal content in diet affects severity of manganese toxicity in Drosophila	10
A zebrafish forward genetic screen identifies an indispensable threonine residue in the kinase domain of PRKD2	10
The transcriptional landscape of the cultured murine middle ear epithelium in vitro	10
Local differences in robustness to ocean acidification	10
Defective COX1 expression in aging mice liver	10
Oo-site: A dashboard to visualize gene expression during Drosophila oogenesis suggests meiotic entry is regulated post-transcriptionally	10
First person – Brandon Hastings	9
Connecting different heart diseases through intercellular communication	9
Auxin treatment increases lifespan in Caenorhabditis elegans	9
Dissecting dynamics and differences of selective pressures in the evolution of human pigmentation	9
exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates	9
A Caenorhabditis elegans behavioral assay distinguishes early stage prostate cancer patient urine from controls	9
A hypomorphic mutation in Pold1 disrupts the coordination of embryo size expansion and morphogenesis during gastrulation	9
First person – Wanyue Xu	9
Tight junction stabilization prevents HepaRG cell death in drug-induced intrahepatic cholestasis	8
Developmental expression patterns of toolkit genes in male accessory gland ofDrosophilaparallels those of mammalian prostate	8
Plpp3, a novel regulator of pluripotency exit and endodermal differentiation of mouse embryonic stem cells	8
Three functional polymorphisms in CCDC170 were associated with osteoporosis phenotype	8
First person – Emily Harders	8
Reevaluating the relationship between EGL-43 (EVI1) and LIN-12 (Notch) during C. elegans anchor cell invasion	8
Transgenic force sensors and software to measure force transmission across the mammalian nuclear envelope in vivo	8
Chromosomal organization of multigene families and meiotic analysis in species of Loricariidae (Siluriformes) from Brazilian Amazon, with description of a new cytotype for genus Spatuloricaria	8
Macrophages allocate before apoptosis initiation and produce reactive oxygen species during interdigital phagocytosis	8
Pudgy mouse rib deformities emanate from abnormal paravertebral longitudinal cartilage/bone accumulations	8
PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more	8
Assessing metabolic rates in zebrafish using a 3D-printed intermittent-flow respirometer and swim tunnel system	8
Quantified growth of the human embryonic heart	8
Presynaptic HCN channels constrain GABAergic synaptic transmission in pyramidal cells of the medial prefrontal cortex	8
A year at the forefront of plasmodesmal biology	8
Exploiting the potential of lung stem cells to develop pro-regenerative therapies	8
Influence of visual perception on movement decisions by an ungulate prey species	7
Local adaptation in thermal tolerance for a tropical butterfly across ecotone and rainforest habitats	7
Glutaraldehyde-enhanced autofluorescence as a general tool for 3D morphological imaging	7
Spectral scanning and fluorescence lifetime imaging microscopy (FLIM) enable separation and characterization of C. elegans autofluorescence in the cuticle and gut	7
Patterns of variations in dorsal colouration of the Italian wall lizard Podarcis siculus	7
Knee position affects medial gastrocnemius and soleus activation during dynamic plantarflexion: no evidence for an inter-muscle compensation in healthy young adults	7
Zebrafish embryos hatch early in response to chemical and mechanical indicators of predation risk, resulting in underdeveloped swimming ability of hatchling larvae	7
Variations in oxidative stress and antioxidant defense level during different phases of hibernation in common Asian toad,Duttaphrynus melanostictus	7
miR-8b is involved in brain and eye regeneration ofDugesia japonicain head regeneration	7

10th European Calcium Society symposium: The Ca2+-signaling toolkit in cell function, health and disease	7
Short- and long-term exposure to high glucose induces unique transcriptional changes in osteoblasts in vitro	7
Intracellular dynamics of ubiquitin-like 3 visualized using an inducible fluorescent timer expression system	7
FRS2-independent GRB2 interaction with FGFR2 is not required for embryonic development	7
Short-range homing in camels: displacement experiments	7
Data transformation and model selection in bivariate allometry	6
Over-expressing NadA quinolinate synthase inEscherichia colienhances the bioelectrochemistry in microbial fuel cells	6
Robust assembly of the aldehyde dehydrogenase Ald4p in Saccharomyces cerevisiae	6
Cellular signalling protrusions enable dynamic distant contacts in spinal cord neurogenesis	6
An ode to multidisciplinarity: the ‘Bacteria Orchestrate Life’ international meeting	6
First person – J. Pablo Sánchez-Ovando	6
NEDD1-S411 phosphorylation plays a critical function in the coordination of microtubule nucleation during mitosis	6
First person – Soyam Gupta	6
First person – Daisy Pineda-Suazo	6
Gene expression and DNA methylation changes in response to hypoxia in toxicant-adapted Atlantic killifish (Fundulus heteroclitus)	6
First person – Jon Bell	6
First person – Franziska Hacker	6
Progressive Palaeontology 2024 conference report	6
First person – Julia Loose	6
Drosophila CRISPR/Cas9 mutants as tools to analyse cardiac filamin function and pathogenicity of human FLNC variants	6
The influence of carbon dioxide on cerebral metabolism and oxygen consumption: combining multimodal monitoring with dynamic systems modelling	6
The LRRK2 signaling network converges on a centriolar phospho-Rab10/RILPL1 complex to cause deficits in centrosome cohesion and cell polarization	6
Apoptosis is a generator of Wnt-dependent regeneration and homeostatic cell renewal in the ascidian Ciona	6
First person – Phuong Le and Jeanne Quinn	6
Regulation of NANOG and SOX2 expression by activin A and a canonical WNT agonist in bovine embryonic stem cells and blastocysts	6
Efficient genome editing using modified Cas9 proteins in zebrafish	6
Inter- and intra-limb coordination during initial sprint acceleration	6
Potentiating Vγ9Vδ2 T cell proliferation and assessing their cytotoxicity towards adherent cancer cells at the single cell level	6
First person – Yao Xiao	6
Loss of flrt2 gene leads to microphthalmia in zebrafish	5
Manipulating mitochondrial reactive oxygen species alters survival in unexpected ways in a Drosophila Cdk5 model of neurodegeneration	5
Trailblazers in cancer research: the next generation – the British Association of Cancer Research early-career conference	5
First person – Marjan Abbasi	5
Identification of proteins that bind extracellular microRNAs secreted by the parasitic nematode Trichinella spiralis	5
First person – Yixing Wu and Ying Bai	5
ARL3 and ARL13B GTPases participate in distinct steps of INPP5E targeting to the ciliary membrane	5
midline represses Dpp signaling and target gene expression in Drosophila ventral leg development	5
Chk2-p53 and JNK in irradiation-induced cell death of hematopoietic progenitors and differentiated cells inDrosophilalarval lymph gland	5
Expression of Concern: MicroRNA-96-5p promotes proliferation, invasion and EMT of oral carcinoma cells by directly targeting FOXF2	5
First person – Daniel V. Guebel	5
First person – Justin Varholick	5
Energetics of whiskered bats in comparison to other bats of the family Vespertilionidae	5
First person – Shohei Yamamoto	5
First person – Yoshikazu Haramoto	5
Expression levels and activities of energy-yielding ATPases in the oligohaline neritid snail Theodoxus fluviatilis under changing environmental salinities	5
Biophysical and biochemical properties of Deup1 self-assemblies: a potential driver for deuterosome formation during multiciliogenesis	5
First person – Ming-Hsuan Wen	5
Correction: Stable atrogin-1 (Fbxo32) and MuRF1 (Trim63) gene expression is involved in the protective mechanism in soleus muscle of hibernating Daurian ground squirrels (<	5
Patient-matched tumours, plasma, and cell lines reveal tumour microenvironment- and cell culture-specific microRNAs	5
Older spiny mice (Acomys cahirinus) have delayed and spatially heterogenous ear wound regeneration	5
Postnatal depletion of maternal cells biases T lymphocytes and natural killer cells’ profiles toward early activation in the spleen	5
Future leader to watch – Tania Martins-Marques	5
Future leader to watch – Gregory Redpath	5
Future leader to watch – Roman Zug	5
Introducing Daniel Gorelick – a new Editor-in-Chief for Biology Open	5
Cytoneme-like protrusion formation induced by LAR is promoted by receptor dimerization	5
Altered germline cyst formation and oogenesis in Tex14 mutant mice	4
Clonal behaviour of myogenic precursor cells throughout the vertebrate lifespan	4
The lymphatic system favours survival of a unique T. brucei population	4
Heart rate as a proxy for estimating oxygen consumption rates in loggerhead turtles (Caretta caretta)	4
High-throughput detection of eukaryotic parasites and arboviruses in mosquitoes	4
Novel protocol to observe the intestinal tuft cell using transmission electron microscopy	4
A Year at the Forefront of Gliding Locomotion	4
First person – Bishal Basak	4
The genomic basis of host and vector specificity in non-pathogenic trypanosomatids	4
Air–liquid interface culture combined with differentiation factors reproducing intestinal cell structure formation in vitro	4
Mitochondrial metabolism in Drosophila macrophage-like cells regulates body growth via modulation of cytokine and insulin signaling	4
An arch worth revisiting: A study on the feline humeral supracondylar foramen and its evolutionary significance	4
First person – Alice Yuen	4
Microbiome transplants may not improve health and longevity in Drosophila melanogaster	4
Peripodial adherens junctions regulate Ajuba-Yorkie signaling to preserve fly eye morphology	4
Rhoptry kinase protein 39 (ROP39) is a novel factor that recruits host mitochondria to the parasitophorous vacuole of Toxoplasma gondii	4
Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage	4
Correction: IRS-1 increases TAZ expression and promotes osteogenic differentiation in rat bone marrow mesenchymal stem cells	4
Clutch may predict growth of hatchling Burmese pythons better than food availability or sex	4
Suction feeding of West African lungfish (Protopterus annectens): An XROMM analysis of jaw mechanics, cranial kinesis, and hyoid mobility	4
Retraction: MicroRNA-96-5p promotes proliferation, invasion and EMT of oral carcinoma cells by directly targeting FOXF2	4
The Endosomal Sorting Complex, ESCRT, has diverse roles in blood progenitor maintenance, lineage choice and immune response	4
An ethogram identifies behavioural markers of attention to humans in European herring gulls (Larus argentatus)	4
Melanistic coloration does not influence thermoregulation in the crepuscular gecko Eublepharis macularius	4

Clearance rates of sand-burrowed and laterally pressed unburrowed Pismo clam Tivela stultorum (Mawe 1823) in a laboratory open-flow system	4
The relationship between locomotion and hindlimb morphology in the leopard (Panthera pardus) using a geometric morphometric approach	4
Demystification and feasibility of CRISPR technology and gene editing in African laboratories	4
Development of a cypovirus protein microcrystal-encapsulated Bacillus thuringiensis UV-tolerant and mosquitocidal δ-endotoxin	4
Identification of a new allele of O-fucosyltransferase 1 involved in Drosophila intestinal stem cell regulation	4
Tbx5 overexpression in embryoid bodies increases TAK1 expression but does not enhance the differentiation of sinoatrial node cardiomyocytes	4
Modest sexual size dimorphism and allometric growth: a study based on growth and gonad development in the wolf spider Pardosa pseudoannulata (Araneae: Lycosidae)	4
The population frequency of human mitochondrial DNA variants is highly dependent upon mutational bias	4
shRNAs targeting mouseAdam10diminish cell response to proinflammatory stimuli independently ofAdam10silencing	4
Correction: Chorismate synthase mediates cerebral malaria pathogenesis by eliciting salicylic acid-dependent autophagy response in parasite	4
A nematode-derived, mitochondrial stress signaling-regulated peptide exhibits broad antibacterial activity	3
Empowering tomorrow's leaders: the impact of the 15th Network of Young Researchers in Andrology (NYRA) meeting on male reproductive health and interdisciplinary collaboration	3
Focal sources of FGF-10 promote the buckling morphogenesis of the embryonic airway epithelium	3
Improved whole-mount immunofluorescence protocol for consistent and robust labeling of adult Drosophila melanogaster adipose tissue	3
Serotonin: an overlooked regulator of endocytosis and endosomal sorting?	3
Myotonic dystrophy type 1 embryonic stem cells show decreased myogenic potential, increased CpG methylation at the DMPK locus and RNA mis-splicing	3
A monoclonal antibody raised against human EZH2 cross-reacts with the RNA-binding protein SAFB	3
Dynamic shapes of the zygote and two-cell mouse and human	3
Neural stem cell research in Africa: current realities and future prospects	3
Population-level antagonism between FGF and BMP signaling steers mesoderm differentiation in embryonic stem cells	3
First person – Daniel Lenthall	3
Sexual dimorphism and the impact of aging on ball rolling-associated locomotor behavior in Drosophila	3
Theoretical model of impact mitigation mechanisms inherent to the North American bison skull	3
Odours of cancerous mouse congeners: detection and attractiveness	3
The fission yeast SUMO-targeted ubiquitin ligase Slx8 functionally associates with clustered centromeres and the silent mating-type region at the nuclear periphery	3
A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe syndrome	3
An experimental test of chronic traffic noise exposure on parental behaviour and reproduction in zebra finches	3
Oviductal fluid counterbalances the negative effect of high temperature on sperm in an ectotherm model	3
CRISPR/Cas9-mediated knockout of the ubiquitin variant UbKEKS reveals a role in regulating nucleolar structures and composition	3
Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish	3
Motion: enhancing signals and concealing cues	3
New K50R mutant mouse models reveal impaired hypusination of eif5a2 with alterations in cell metabolite landscape	3
Promyelocytic leukemia nuclear body-like structures can assemble in mouse oocytes	3
The importance of considering regulatory domains in genome-wide analyses – the nearest gene is often wrong!	3
Does swimming at the bottom serve as a hydraulic advantage for benthic fish Neogobius melanostomus Pallas (1814) in flowing water?	3
BBQ methods: streamlined workflows for bacterial burden quantification in infected cells by confocal microscopy	3
Shaping the future of male reproductive health: fostering talent at the 14th Network of Young Researchers in Andrology meeting	3
A deep-dive into fictive locomotion – a strategy to probe cellular activity during speed transitions in fictively swimming zebrafish larvae	3
Cardiac myosin super relaxation (SRX): a perspective on fundamental biology, human disease and therapeutics	3
Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis	3
NANOS3 suppresses premature spermatogonial differentiation to expand progenitors and fine-tunes spermatogenesis in mice	3
Geographic variation in bacterial assemblages on cane toad skin is influenced more by local environments than by evolved changes in host traits	3
Palmitoylated small GTPase ARL15 is translocated within Golgi network during adipogenesis	3
Young minds, deeper insights: a recap of the BMAS Summer School 2023, ranging from basic research to clinical implications of bone marrow adipose tissue	3
First person – Jonathon McPhetres	3
Dirichlet process mixture models for single-cell RNA-seq clustering	3
An atlas of Brachypodium distachyon lateral root development	3
Auxin confers protection against ER stress in Caenorhabditis elegans	3