Biology Open

Article	Citations
First person – Daisy Pineda-Suazo	36
Primary human neutrophils and monocytes migrate along endothelial cell boundaries to optimize search efficiency under static in vitro conditions	34
Unpredictable aggressive defence of the venomous snake, Crotalus ravus, towards predators and humans	30
First person – Rajeshwari B. R.	28
Concrete consequences: construction on prime honey bee habitat doubles foraging distances	26
Reorganization of the heterochromatin-associated gene-dense subcompartment in early neuronal development	24
Local differences in robustness to ocean acidification	24
Cuticular microstructure of the locust femur–tibia joint	24
A year at the forefront of plasmodesmal biology	22
Fast & Fair peer review: a bold experiment in scientific publishing	22
Divalent metal content in diet affects severity of manganese toxicity in Drosophila	21
Chromosomal organization of multigene families and meiotic analysis in species of Loricariidae (Siluriformes) from Brazilian Amazon, with description of a new cytotype for genus Spatuloricaria	20
Macrophages allocate before apoptosis initiation and produce reactive oxygen species during interdigital phagocytosis	19
Hip stabilization in an australopithecine-like hip: the influence of shape on muscle activation	18
EyeHex toolbox for complete segmentation of ommatidia in fruit fly eyes	18
The extracellular matrix controls stem cell specification and crypt morphology in the developing and adult mouse gut	16
First person – Neha Jadhav Giridhar and Bita Hambrecht	16
Over-expressing NadA quinolinate synthase inEscherichia colienhances the bioelectrochemistry in microbial fuel cells	16
Knee position affects medial gastrocnemius and soleus activation during dynamic plantarflexion: no evidence for an inter-muscle compensation in healthy young adults	16
Shaping the future of male reproductive health: fostering talent at the 14th Network of Young Researchers in Andrology meeting	15
Correction: Stable atrogin-1 (Fbxo32) and MuRF1 (Trim63) gene expression is involved in the protective mechanism in soleus muscle of hibernating Daurian ground squirrels (<	15
shRNAs targeting mouseAdam10diminish cell response to proinflammatory stimuli independently ofAdam10silencing	15
Young minds, deeper insights: a recap of the BMAS Summer School 2023, ranging from basic research to clinical implications of bone marrow adipose tissue	15
Empowering tomorrow's leaders: the impact of the 15th Network of Young Researchers in Andrology (NYRA) meeting on male reproductive health and interdisciplinary collaboration	14
Dynamic shapes of the zygote and two-cell mouse and human	14

Retraction: Overexpression of long non-coding RNA SBF2-AS1 promotes cell progression in esophageal squamous cell carcinoma (ESCC) by repressing miR-494 to up-regulate PFN2 expression	14
NANOS3 suppresses premature spermatogonial differentiation to expand progenitors and fine-tunes spermatogenesis in mice	14
Manipulating mitochondrial reactive oxygen species alters survival in unexpected ways in a Drosophila Cdk5 model of neurodegeneration	13
First person – Franziska Hacker	13
The relationship between locomotion and hindlimb morphology in the leopard (Panthera pardus) using a geometric morphometric approach	13
Ccn2a acts downstream of cx43 to influence joint formation during zebrafish fin regeneration	12
First person – Mikaela Scheer	12
Insulated piggyBac and FRT vectors for engineering transgenic homozygous and heterozygous eHAP cells	12
First person – Avik Banerjee	11
The importance of considering regulatory domains in genome-wide analyses – the nearest gene is often wrong!	11
EFEMP1 contributes to light-dependent ocular growth in zebrafish	11
Normotensive metabolic syndrome in Transient Receptor Potential Canonical Channel type 1 Trpc1−/− mice.	10
First person – Tom Carruthers	10
Fluorescent protein tags for human tropomyosin isoform comparison	10
Investigating the link between morphological characteristics and diet in an island population of omnivorous reptiles (Sphenodon punctatus)	10
Winging it: hummingbirds alter flying kinematics during molt	10
The Endosomal Sorting Complex, ESCRT, has diverse roles in blood progenitor maintenance, lineage choice and immune response	10
First person – Avery Hinks	10
Social interactions among ants are impacted by food availability and group size	10
An experimental test of chronic traffic noise exposure on parental behaviour and reproduction in zebra finches	10
From fossils to future – Jane Francis on polar exploration and changing climates	10
Differential effect of ubiquitous and germline depletion of Integrator complex function on C. elegans physiology	10
Effects of blood extraction and ecophysiological experiments on stress in adult males of Liolaemus attenboroughi	10
First person – Leah Eller	10
First person – Angela Fan and Yoldas Yildiz	9
Elucidating the genetic architecture of migratory timing in a songbird migrant, the great reed warbler, Acrocephalus arundinaceus	9
Hotter deserts and the impending challenges for the spiny-tailed Lizard in India	9
Feeding a rich diet supplemented with the translation inhibitor cycloheximide decreases lifespan and ovary size in Drosophila	9
Ethanol downregulates gastrula gene expression and cell movement, causing symptoms of foetal alcohol spectrum disorders	9
Cellular senescence limits translational readthrough	9
Holding time has limited impact on constitutive innate immune function in a long-lived Antarctic seabird, the Adélie penguin: implications for field studies	8
Metabolic shift towards oxidative phosphorylation reduces cell-density-induced cancer-stem-cell-like characteristics in prostate cancer in vitro	8
Frequency-dependent avoidance movement of glass catfish in response to sinusoidal electrical stimulation and associated spiking patterns of electroreceptors	8
Mutational cooperativity of RUNX1::RUNX1T1 isoform 9a and oncogenic NRAS in zebrafish myeloid leukaemia	8
Fully automated point spread function analysis using PyCalibrate	8
Bees display limited acclimation capacity for heat tolerance	8
First person – Isabelle Toussaint-Lardé	8
Neural crest development and disorders: from patient to model system and back again – the NEUcrest conference	8
Meeting proceedings of the 43rd Indian Association for Cancer Research (IACR)	8
The Abl-interactor Abi suppresses the function of the BRAG2 GEF family member Schizo	8
Parental exposure to ocean acidification impacts gamete production and physiology but not offspring performance in Nematostella vectensis	8
Investigating the effect of cholinergic and adrenergic blocking agents on maternal-fetal heart rates and their interactions in mice fetuses	8
Response to Correspondence: Hajnal et al. ‘The role of lin-12 notch in C. elegans anchor cell proliferation’	8
Glycogen synthase is required for heat shock-mediated autophagy induction in neuronal cells	8
Zika virus-induces metabolic alterations in fetal neuronal progenitors that could influence in neurodevelopment during early pregnancy	7
Retraction: Overexpression of Wnt7a enhances radiosensitivity of non-small-cell lung cancer via the Wnt/JNK pathway	7
Aging disrupts spatiotemporal regulation of germline stem cells and niche integrity	7
Reliable replicative lifespan determination of yeast with a single-channel microfluidic chip	7
Temporal integration and decision-making in crocodiles	7
Vestigial-dependent induction contributes to robust patterning but is not essential for wing-fate recruitment in Drosophila	7

Intrinsic function of the peptidylarginine deiminase PADI4 is dispensable for normal haematopoiesis	7
Protein complexes from mouse and chick brain that interact with phospho-KXGS motif tau/microtubule associated protein antibody	7
Single-motor and multi-motor motility properties of kinesin-6 family members	7
Linking peak intensity of mechanically stimulated bioluminescence and cell surface area in dinoflagellates	7
Arf6 is necessary for senseless expression in response to wingless signalling during Drosophila wing development	7
Effects of vessel noise on beluga (Delphinapterus leucas) call type use: ultrasonic communication as an adaptation to noisy environments?	7
ASCL2 is a key regulator of the proliferation–differentiation equilibrium in the esophageal epithelium	7
Pacsin2 is required for endocytosis in the zebrafish pronephric tubule	7
SlicerMorph photogrammetry: an open-source photogrammetry workflow for reconstructing 3D models	7
Na,K-ATPase activity promotes macropinocytosis in colon cancer via Wnt signaling	7
The zebrafish ETS transcription factor Fli1b functions upstream of Scl/Tal1 during embryonic hematopoiesis	7
First person – Latasha Ludwig	7
A novel technique for atraumatic transurethral catheterisation of male rats	7
Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world	7
First person – Emily Bulger	6
Characterization of alternative splicing during mammalian brain development reveals the extent of isoform diversity and potential effects on protein structural changes	6
Biomechanical analysis of little penguins’ underwater locomotion from the free-ranging dive data	6
Maintenance of neuronal fate and transcriptional identity	6
Actin cytoskeleton in angiogenesis	6
Wnt and BMP signalling direct anterior–posterior differentiation in aggregates of mouse embryonic stem cells	6
Metabolic scaling of fire ants ( Solenopsis invicta ) engaged in collective behaviors	6
Hormonal regulation of miRNA during mammary gland development	6
Insights into Octopus maya cathepsins from metatranscriptome and genome: structure evolutionary relationships and functional role prediction in digestive processes	6
First person – Kaisa Pakari	6
Retraction: MicroRNA-96-5p promotes proliferation, invasion and EMT of oral carcinoma cells by directly targeting FOXF2	6
Innervation of the developing kidney in vivo and in vitro	6
Deletion of taf1 and taf5 in zebrafish capitulate cardiac and craniofacial abnormalities associated with TAFopathies through perturbations in metabolism	6
A Drosophila model of mitochondrial disease phenotypic heterogeneity	6
microRNA-guided immunity against respiratory virus infection in human and mouse lung cells	6
SOX2 and NR2F1 coordinate the gene expression program of the early postnatal visual thalamus	6
CDX2 dose-dependently influences the gene regulatory network underlying human extraembryonic mesoderm development	6
Changes in mitochondrial distribution occur at the axon initial segment in association with neurodegeneration in Drosophila	6
Gait speed and incline modulate peak deceleration and timing of horizontal center of mass deceleration during double support	6
Partial role of volatile organic compounds in behavioural responses of mice to bedding from cancer-affected congeners	6
Antimicrobial peptide expression in the cockroach gut during enterobacterial infection is specific and influenced by type III secretion	6
Increased expression of the small lysosomal gene SVIP in the Drosophila gut suppresses pathophysiological features associated with a high-fat diet	6
Experimental playback of urban noise does not affect cognitive performance in captive Australian magpies	6
Intermittent hypoxia differentially affects metabolic and oxidative stress responses in two species of cyprinid fish	6
An optimized retroviral toolbox for overexpression and genetic perturbation of primary lymphocytes	6
Coilin as a regulator of NF-kB mediated inflammation in preeclampsia	6
Morphlight theory inspired by raptors: musculoskeletal modeling and muscle control in Falco peregrinus wing flapping	6
Computational anatomy and geometric shape analysis enables analysis of complex craniofacial phenotypes in zebrafish	6
Alterations in lifespan and sleep:wake duration under selective monochromes of visible light in Drosophila melanogaster	5
Experimental short-term heatwaves negatively impact body weight gain and survival during larval development in Bombus terrestris L. (Hymenoptera: Apidae)	5
PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more	5
First person – Ming-Hsuan Wen	5
Introducing Daniel Gorelick – a new Editor-in-Chief for Biology Open	5
Transgenic force sensors and software to measure force transmission across the mammalian nuclear envelope in vivo	5
Saccharomyces cerevisiae deficient in the early anaphase release of Cdc14 can traverse anaphase I without ribosomal DNA disjunction and successfully complete meiosis	5
First person – Francesca Mastropasqua and Marika Oksanen	5
Cdc48 and its co-factor Ufd1 extract CENP-A from centromeric chromatin and can induce chromosome elimination in the fission yeast Schizosaccharomyces pombe	5
Cerebral organoids in primary progressive multiple sclerosis reveal stem cell and oligodendrocyte differentiation defect	5
Stress-induced elemental retention in an ectothermic vertebrate	5
Alpha-T-catenin is expressed in peripheral nerves as a constituent of Schwann cell adherens junctions	5
IFT139 regulates Hedgehog signaling and cilia structure through ciliary protein localization	5
Plpp3, a novel regulator of pluripotency exit and endodermal differentiation of mouse embryonic stem cells	5
Zebrafish embryos hatch early in response to chemical and mechanical indicators of predation risk, resulting in underdeveloped swimming ability of hatchling larvae	5
First person – Amy Irving	5
First person – Kelly Diamond	5
First person – Adam Downie	5
exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates	5
Gene expression and DNA methylation changes in response to hypoxia in toxicant-adapted Atlantic killifish ( Fundulus heteroclitus )	5
First person – Daniel Lenthall	5
Dirichlet process mixture models for single-cell RNA-seq clustering	5
Sox8: a multifaceted transcription factor in development and disease	5
trithorax is an essential regulator of cardiac Hox gene expression and anterior-posterior patterning of the Drosophila embryonic heart tube	5
Reevaluating the relationship between EGL-43 (EVI1) and LIN-12 (Notch) during C. elegans anchor cell invasion	5
Ethanol induces subcellular trafficking of the RNA-binding protein, hnRNP A1, in neuronal cells in vitro, but not in the peripubertal rat brain	5
EphA1 receptor tyrosine kinase is localized to the nucleus in rhabdomyosarcoma from multiple species	4
So long, and thanks for all the papers about fish (and other organisms too)	4
A larval zebrafish model of cardiac physiological recovery following cardiac arrest and myocardial hypoxic damage	4
Correction: Polyphyllin II inhibits liver cancer cell proliferation, migration and invasion through downregulated cofilin activity and the AKT/NF-κB pathway	4
The uncoating of EV71 in mature late endosomes requires CD-M6PR	4
BBQ methods: streamlined workflows for bacterial burden quantification in infected cells by confocal microscopy	4
Spatial structure could explain the maintenance of alternative reproductive tactics in tree cricket males	4
A genome-wide CRISPR screen implicates plasma membrane asymmetry in exogenous C6-ceramide toxicity	4
WntA expression and wing transcriptomics illuminate the evolution of stripe patterns in skipper butterflies	4
First person – Valentina Laverde	4
The next stage in Biology Open's support for early-career researchers	4
First person – Neydiana Pina-Lopes	4

First person – Ricardo Villalba-Briones	4
First person – Yixing Wu and Ying Bai	4
Cohesin protein Smc3 influences kinocilial structure and function	4
Tbx5 overexpression in embryoid bodies increases TAK1 expression but does not enhance the differentiation of sinoatrial node cardiomyocytes	4
First person – Alexandra Venuto	4
Population-level antagonism between FGF and BMP signaling steers mesoderm differentiation in embryonic stem cells	4
foxg1a is required for hair cell development and regeneration in the zebrafish lateral line	4
A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe syndrome	4
PIWIL2 downregulation in colon cancer promotes transposon activity and pro-tumorigenic phenotypes	4
PTP10D-mediated cell competition is not obligately required for elimination of polarity-deficient clones	4
Characterization of nitric oxide in Octopus maya nervous system and its potential role in sensory perception	4
Metabolic FRET sensors in intact organs: Applying spectral unmixing to acquire reliable signals	4
Flavonols do not affect aphid load in green or senescing birch leaves but coincide with a decrease in Photosystem II functionality	4
The lymphatic system favours survival of a unique T. brucei population	4
Correction: IRS-1 increases TAZ expression and promotes osteogenic differentiation in rat bone marrow mesenchymal stem cells	4
midline represses Dpp signaling and target gene expression in Drosophila ventral leg development	4
Development of the dictyostelid Polysphondylium violaceum does not require secreted cAMP	4
Altered epithelial development of the lateral ventricle choroid plexus in Mllt11 mutants	4
Hepatic leukemia factor-expressing paraxial mesoderm cells contribute to the developing brain vasculature	4
Development of a cypovirus protein microcrystal-encapsulated Bacillus thuringiensis UV-tolerant and mosquitocidal δ-endotoxin	4
Temporal transcriptomic profiling of human three-dimensional neuromuscular co-cultures	4
Low colostrum intake results in potential accumulation of peroxisome lipid substrates in vaginal tissue of 3-week-old gilts	4
First person – Matthew Penaso-Stinson and Summer Paulson	4
Future leader to watch – Nathan Harmston	4
Elliptical Fourier analysis of hominoid radius shape: implications for Ardipithecus ramidus	4
Beyond bold versus shy: Zebrafish exploratory behavior falls into several behavioral clusters and is influenced by strain and sex	4
First person – Fatima Batool	4
Expression levels and activities of energy-yielding ATPases in the oligohaline neritid snail Theodoxus fluviatilis under changing environmental salinities	4
Theoretical model of impact mitigation mechanisms inherent to the North American bison skull	4