Biology Open

Article	Citations
First person – Rajeshwari B. R.	39
Chromosomal organization of multigene families and meiotic analysis in species of Loricariidae (Siluriformes) from Brazilian Amazon, with description of a new cytotype for genus Spatuloricaria	35
A year at the forefront of plasmodesmal biology	29
Over-expressing NadA quinolinate synthase inEscherichia colienhances the bioelectrochemistry in microbial fuel cells	29
Macrophages allocate before apoptosis initiation and produce reactive oxygen species during interdigital phagocytosis	24
Divalent metal content in diet affects severity of manganese toxicity in Drosophila	24
Fast & Fair peer review: a bold experiment in scientific publishing	23
The extracellular matrix controls stem cell specification and crypt morphology in the developing and adult mouse gut	22
Unpredictable aggressive defence of the venomous snake, Crotalus ravus, towards predators and humans	22
Knee position affects medial gastrocnemius and soleus activation during dynamic plantarflexion: no evidence for an inter-muscle compensation in healthy young adults	21
First person – Daisy Pineda-Suazo	20
Local differences in robustness to ocean acidification	19
Ccn2a acts downstream of cx43 to influence joint formation during zebrafish fin regeneration	19
First person – Mikaela Scheer	18
Correction: Stable atrogin-1 (Fbxo32) and MuRF1 (Trim63) gene expression is involved in the protective mechanism in soleus muscle of hibernating Daurian ground squirrels (<	18
First person – Franziska Hacker	16
Manipulating mitochondrial reactive oxygen species alters survival in unexpected ways in a Drosophila Cdk5 model of neurodegeneration	16
Future leader to watch – Tania Martins-Marques	16
The importance of considering regulatory domains in genome-wide analyses – the nearest gene is often wrong!	16
An experimental test of chronic traffic noise exposure on parental behaviour and reproduction in zebra finches	15
NANOS3 suppresses premature spermatogonial differentiation to expand progenitors and fine-tunes spermatogenesis in mice	15
Empowering tomorrow's leaders: the impact of the 15th Network of Young Researchers in Andrology (NYRA) meeting on male reproductive health and interdisciplinary collaboration	15
EFEMP1 contributes to light-dependent ocular growth in zebrafish	14
Young minds, deeper insights: a recap of the BMAS Summer School 2023, ranging from basic research to clinical implications of bone marrow adipose tissue	14
Rhoptry kinase protein 39 (ROP39) is a novel factor that recruits host mitochondria to the parasitophorous vacuole of Toxoplasma gondii	13

The Endosomal Sorting Complex, ESCRT, has diverse roles in blood progenitor maintenance, lineage choice and immune response	13
Dynamic shapes of the zygote and two-cell mouse and human	13
shRNAs targeting mouseAdam10diminish cell response to proinflammatory stimuli independently ofAdam10silencing	13
The relationship between locomotion and hindlimb morphology in the leopard (Panthera pardus) using a geometric morphometric approach	13
Shaping the future of male reproductive health: fostering talent at the 14th Network of Young Researchers in Andrology meeting	12
Parental exposure to ocean acidification impacts gamete production and physiology but not offspring performance in Nematostella vectensis	12
Dorso-ventral heterogeneity in tracheal basal stem cells	12
Differential effect of ubiquitous and germline depletion of Integrator complex function on C. elegans physiology	12
Retraction: Overexpression of long non-coding RNA SBF2-AS1 promotes cell progression in esophageal squamous cell carcinoma (ESCC) by repressing miR-494 to up-regulate PFN2 expression	12
First person – Avery Hinks	12
Cellular senescence limits translational readthrough	12
Metabolic shift towards oxidative phosphorylation reduces cell-density-induced cancer-stem-cell-like characteristics in prostate cancer in vitro	12
Modulation of mitochondrial nucleoid structure during aging and by mtDNA content in Drosophila	12
First person – Tom Carruthers	12
Investigating the link between morphological characteristics and diet in an island population of omnivorous reptiles (Sphenodon punctatus)	11
Holding time has limited impact on constitutive innate immune function in a long-lived Antarctic seabird, the Adélie penguin: implications for field studies	11
Normotensive metabolic syndrome in Transient Receptor Potential Canonical Channel type 1 Trpc1−/− mice.	11
Hotter deserts and the impending challenges for the spiny-tailed Lizard in India	11
Fully automated point spread function analysis using PyCalibrate	11
Feeding a rich diet supplemented with the translation inhibitor cycloheximide decreases lifespan and ovary size in Drosophila	11
First person – Leah Eller	10
Social interactions among ants are impacted by food availability and group size	10
Effects of blood extraction and ecophysiological experiments on stress in adult males of Liolaemus attenboroughi	10
The Abl-interactor Abi suppresses the function of the BRAG2 GEF family member Schizo	10
Winging it: hummingbirds alter flying kinematics during molt	10
From fossils to future – Jane Francis on polar exploration and changing climates	9
Meeting proceedings of the 43rd Indian Association for Cancer Research (IACR)	9
Bees display limited acclimation capacity for heat tolerance	9
MICAL-L1 is required for cargo protein delivery to the cell surface	9
Frequency-dependent avoidance movement of glass catfish in response to sinusoidal electrical stimulation and associated spiking patterns of electroreceptors	9
Intrinsic function of the peptidylarginine deiminase PADI4 is dispensable for normal haematopoiesis	9
Associative learning in larval and adultDrosophilais impaired by the dopamine-synthesis inhibitor 3-Iodo-L-tyrosine	8
First person – Sutirtha Lahiri	8
Na,K-ATPase activity promotes macropinocytosis in colon cancer via Wnt signaling	8
Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world	8
The zebrafish ETS transcription factor Fli1b functions upstream of Scl/Tal1 during embryonic hematopoiesis	8
Investigating the effect of cholinergic and adrenergic blocking agents on maternal-fetal heart rates and their interactions in mice fetuses	8
Hormonal regulation of miRNA during mammary gland development	8
Single-motor and multi-motor motility properties of kinesin-6 family members	8
Zika virus-induces metabolic alterations in fetal neuronal progenitors that could influence in neurodevelopment during early pregnancy	8
Retraction: Overexpression of Wnt7a enhances radiosensitivity of non-small-cell lung cancer via the Wnt/JNK pathway	8
Glycogen synthase is required for heat shock-mediated autophagy induction in neuronal cells	8
Aging disrupts spatiotemporal regulation of germline stem cells and niche integrity	8
Response to Correspondence: Hajnal et al. ‘The role of lin-12 notch in C. elegans anchor cell proliferation’	8
Pacsin2 is required for endocytosis in the zebrafish pronephric tubule	8
Neural crest development and disorders: from patient to model system and back again – the NEUcrest conference	8
Protein complexes from mouse and chick brain that interact with phospho-KXGS motif tau/microtubule associated protein antibody	8
Mutational cooperativity of RUNX1::RUNX1T1 isoform 9a and oncogenic NRAS in zebrafish myeloid leukaemia	8
ASCL2 is a key regulator of the proliferation–differentiation equilibrium in the esophageal epithelium	8
Computational anatomy and geometric shape analysis enables analysis of complex craniofacial phenotypes in zebrafish	7

Metabolic scaling of fire ants (Solenopsis invicta) engaged in collective behaviors	7
A novel technique for atraumatic transurethral catheterisation of male rats	7
Partial role of volatile organic compounds in behavioural responses of mice to bedding from cancer-affected congeners	7
Retraction: MicroRNA-96-5p promotes proliferation, invasion and EMT of oral carcinoma cells by directly targeting FOXF2	7
Changes in mitochondrial distribution occur at the axon initial segment in association with neurodegeneration in Drosophila	7
Reliable replicative lifespan determination of yeast with a single-channel microfluidic chip	7
Nondeterministic nature of sensorineural outcomes following noise trauma	7
Effects of vessel noise on beluga (Delphinapterus leucas) call type use: ultrasonic communication as an adaptation to noisy environments?	7
Arf6 is necessary for senseless expression in response to wingless signalling during Drosophila wing development	7
Loss of Elp1 perturbs histone H2A.Z and the Notch signaling pathway	7
Vestigial-dependent induction contributes to robust patterning but is not essential for wing-fate recruitment in Drosophila	7
Antimicrobial peptide expression in the cockroach gut during enterobacterial infection is specific and influenced by type III secretion	7
Characterization of nuclear pore complex targeting domains in Pom152 in Saccharomyces cerevisiae	7
First person – Latasha Ludwig	7
Morphlight theory inspired by raptors: musculoskeletal modeling and muscle control in Falco peregrinus wing flapping	6
Deletion of taf1 and taf5 in zebrafish capitulate cardiac and craniofacial abnormalities associated with TAFopathies through perturbations in metabolism	6
Alterations in lifespan and sleep:wake duration under selective monochromes of visible light in Drosophila melanogaster	6
Tight junction stabilization prevents HepaRG cell death in drug-induced intrahepatic cholestasis	6
Gene expression and DNA methylation changes in response to hypoxia in toxicant-adapted Atlantic killifish (Fundulus heteroclitus)	6
Sox8: a multifaceted transcription factor in development and disease	6
RNA-Seq reveals changes in human placental metabolism, transport and endocrinology across the first–second trimester transition	6
Regulation of NANOG and SOX2 expression by activin A and a canonical WNT agonist in bovine embryonic stem cells and blastocysts	6
First person – Emily Bulger	6
Maintenance of neuronal fate and transcriptional identity	6
Wnt and BMP signalling direct anterior–posterior differentiation in aggregates of mouse embryonic stem cells	6
CDX2 dose-dependently influences the gene regulatory network underlying human extraembryonic mesoderm development	6
An optimized retroviral toolbox for overexpression and genetic perturbation of primary lymphocytes	6
Actin cytoskeleton in angiogenesis	6
Developmental expression patterns of toolkit genes in male accessory gland ofDrosophilaparallels those of mammalian prostate	6
First person – Amy Irving	6
First person – Francesca Mastropasqua and Marika Oksanen	6
A Drosophila model of mitochondrial disease phenotypic heterogeneity	6
Characterization of alternative splicing during mammalian brain development reveals the extent of isoform diversity and potential effects on protein structural changes	6
Cerebral organoids in primary progressive multiple sclerosis reveal stem cell and oligodendrocyte differentiation defect	6
Coilin as a regulator of NF-kB mediated inflammation in preeclampsia	6
Insights into Octopus maya cathepsins from metatranscriptome and genome: structure evolutionary relationships and functional role prediction in digestive processes	6
microRNA-guided immunity against respiratory virus infection in human and mouse lung cells	6
Intermittent hypoxia differentially affects metabolic and oxidative stress responses in two species of cyprinid fish	6
Interaction between Discs large and Pins/LGN/GPSM2: a comparison across species	6
First person – Kelly Diamond	6
Innervation of the developing kidney in vivo and in vitro	6
Biomechanical analysis of little penguins’ underwater locomotion from the free-ranging dive data	6
Experimental playback of urban noise does not affect cognitive performance in captive Australian magpies	6
Increased expression of the small lysosomal gene SVIP in the Drosophila gut suppresses pathophysiological features associated with a high-fat diet	6
Zebrafish embryos hatch early in response to chemical and mechanical indicators of predation risk, resulting in underdeveloped swimming ability of hatchling larvae	5
PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more	5
exTREEmaTIME: a method for incorporating uncertainty into divergence time estimates	5
First person – Ming-Hsuan Wen	5
Correction: IRS-1 increases TAZ expression and promotes osteogenic differentiation in rat bone marrow mesenchymal stem cells	5
trithorax is an essential regulator of cardiac Hox gene expression and anterior-posterior patterning of the Drosophila embryonic heart tube	5
Tbx5 overexpression in embryoid bodies increases TAK1 expression but does not enhance the differentiation of sinoatrial node cardiomyocytes	5
Expression levels and activities of energy-yielding ATPases in the oligohaline neritid snail Theodoxus fluviatilis under changing environmental salinities	5
Transgenic force sensors and software to measure force transmission across the mammalian nuclear envelope in vivo	5
Vitamin A cycle byproducts explain retinal damage and molecular changes thought to initiate retinal degeneration	5
Auxin treatment increases lifespan in Caenorhabditis elegans	5
First person – Yixing Wu and Ying Bai	5
Reevaluating the relationship between EGL-43 (EVI1) and LIN-12 (Notch) during C. elegans anchor cell invasion	5
Theoretical model of impact mitigation mechanisms inherent to the North American bison skull	5
Dirichlet process mixture models for single-cell RNA-seq clustering	5
The lymphatic system favours survival of a unique T. brucei population	5
Identification of a new allele of O-fucosyltransferase 1 involved in Drosophila intestinal stem cell regulation	5
Cdc48 and its co-factor Ufd1 extract CENP-A from centromeric chromatin and can induce chromosome elimination in the fission yeast Schizosaccharomyces pombe	5
Plpp3, a novel regulator of pluripotency exit and endodermal differentiation of mouse embryonic stem cells	5
Alpha-T-catenin is expressed in peripheral nerves as a constituent of Schwann cell adherens junctions	5
Saccharomyces cerevisiae deficient in the early anaphase release of Cdc14 can traverse anaphase I without ribosomal DNA disjunction and successfully complete meiosis	5
Variations in oxidative stress and antioxidant defense level during different phases of hibernation in common Asian toad,Duttaphrynus melanostictus	5
midline represses Dpp signaling and target gene expression in Drosophila ventral leg development	5
A human stem cell resource to decipher the biochemical and cellular basis of neurodevelopmental defects in Lowe syndrome	5
First person – Daniel Lenthall	5
Introducing Daniel Gorelick – a new Editor-in-Chief for Biology Open	5
BBQ methods: streamlined workflows for bacterial burden quantification in infected cells by confocal microscopy	5
Experimental short-term heatwaves negatively impact body weight gain and survival during larval development in Bombus terrestris L. (Hymenoptera: Apidae)	5
So long, and thanks for all the papers about fish (and other organisms too)	4
PTP10D-mediated cell competition is not obligately required for elimination of polarity-deficient clones	4
Hepatic leukemia factor-expressing paraxial mesoderm cells contribute to the developing brain vasculature	4
Population-level antagonism between FGF and BMP signaling steers mesoderm differentiation in embryonic stem cells	4
Flavonols do not affect aphid load in green or senescing birch leaves but coincide with a decrease in Photosystem II functionality	4
Spatial structure could explain the maintenance of alternative reproductive tactics in tree cricket males	4
Connexin 43 mediated collective cell migration is independent of Golgi orientation	4
insideOutside: an accessible algorithm for classifying interior and exterior points, with applications in embryology	4

A genome-wide CRISPR screen implicates plasma membrane asymmetry in exogenous C6-ceramide toxicity	4
Elliptical Fourier analysis of hominoid radius shape: Implications for Ardipithecus ramidus	4
A larval zebrafish model of cardiac physiological recovery following cardiac arrest and myocardial hypoxic damage	4
Visual acuity of budgerigars for moving targets	4
Metabolic FRET sensors in intact organs: Applying spectral unmixing to acquire reliable signals	4
Low colostrum intake results in potential accumulation of peroxisome lipid substrates in vaginal tissue of 3-week-old gilts	4
Characterization of nitric oxide in Octopus maya nervous system and its potential role in sensory perception	4
Targeted mass spectrometry for monitoring of neural differentiation	4
Ecophysiology of neotropical amphibians and reptiles: lessons learned from Colombia	4
First person – Valentina Laverde	4
First person – Fatima Batool	4
Development of the dictyostelid Polysphondylium violaceum does not require secreted cAMP	4
EphA1 receptor tyrosine kinase is localized to the nucleus in rhabdomyosarcoma from multiple species	4
First person – Alexandra Venuto	4
Beyond bold versus shy: Zebrafish exploratory behavior falls into several behavioral clusters and is influenced by strain and sex	4
The next stage in Biology Open's support for early-career researchers	4
Correction: Polyphyllin II inhibits liver cancer cell proliferation, migration and invasion through downregulated cofilin activity and the AKT/NF-κB pathway	4
Analysis of the chromatin landscape and RNA polymerase II binding at SIN3-regulated genes	4
Constructing a doxycycline-inducible system for an epithelial-to-mesenchymal transition model in MCF10A cells	4
Research culture: science from bench to society	4
Development of a cypovirus protein microcrystal-encapsulated Bacillus thuringiensis UV-tolerant and mosquitocidal δ-endotoxin	4
Future leader to watch – Nathan Harmston	4
foxg1a is required for hair cell development and regeneration in the zebrafish lateral line	3
Allorecognition behaviors in Myxomycetes respond to intraspecies factors	3
Kinetics of Arf1 inactivation regulates Golgi organisation and function in non-adherent fibroblasts	3
Lifespan and ROS levels in different Drosophila melanogaster strains after 24 h hypoxia exposure	3
First person – Martha S. C. Xelhuantzi	3
First person – Santu Saha	3
Automated counting of Drosophila imaginal disc cell nuclei	3
The factory, the antenna and the scaffold: the three-way interplay between the Golgi, cilium and extracellular matrix underlying tissue function	3
Neurophysiological measurements of planarian brain activity: a unique model for neuroscience research	3
New horizons of microphysiological systems: India forging its path in human-relevant research	3
Developmental disorders caused by haploinsufficiency of transcriptional regulators: a perspective based on cell fate determination	3
Bioengineering of a tumour-stroma 3D-tumouroid co-culture model of hypopharyngeal cancer	3
Biology Open 2023 – a year in review	3
First person – Andreas Enström	3
The uncoating of EV71 in mature late endosomes requires CD-M6PR	3
Zebrafish models of alx-linked frontonasal dysplasia reveal a role for Alx1 and Alx3 in the anterior segment and vasculature of the developing eye	3
P2X7 regulates ependymo-radial glial cell proliferation in adult Danio rerio following spinal cord injury	3
Effects of mechanical stimulation on metabolomic profiles of SW1353 chondrocytes: shear and compression	3
Alveolar epithelial paxillin in postnatal lung alveolar development	3
Identification of a postnatal period of interdependent neurogenesis and apoptosis in peripheral neurons	3
Mutations in Drosophila tRNA processing factors cause phenotypes similar to Pontocerebellar Hypoplasia	3
CD133/Prom1 marks proximal mouse oviduct epithelial progenitors and adult epithelial cells with a low generative capacity	3
Germline competent mesoderm: the substrate for vertebrate germline and somatic stem cells?	3
Ecology, ethology, and evolution in the Anthropocene	3
First person – Viju Vijayan Pillai and Prasanthi Koganti	3
First person – Sarit Pal	3
First person – Mai Nguyen	3
Instantaneous visual genotyping and facile site-specific transgenesis via CRISPR-Cas9 and phiC31 integrase	3
First person – Meg Watt	3
Hansenula polymorpha cells lacking the ER-localized peroxins Pex23 or Pex29 show defects in mitochondrial function and morphology	3
Hands-on training in structural biology, a tool for sustainable development in Africa series 4	3
Heart rate and startle responses in diving, captive harbour porpoises (Phocoena phocoena) exposed to transient noise and sonar	3
Early-life challenge enhances cortisol regulation in zebrafish larvae	3
First person – Bailey Calder	3
Establishment of a novel protocol for formalin-fixed paraffin-embedded organoids and spheroids	3
First person – Sophie Kraunsoe	3
Characterization of gene cluster heterogeneity in single-cell transcriptomic data within and across cancer types	3
Human in vivo medial gastrocnemius gear during active and passive muscle lengthening: effect of inconsistent methods and nomenclature on data interpretation	3
Computational tools for quantifying actin filament numbers, lengths, and bundling	3
Context-dependent thermolability of sex determination in a lacertid lizard with heteromorphic sex chromosomes	3
Discontinuous, biphasic, ontogenetic shifts in the metabolic allometry of aquatic animals?	3
Re-assessment of the subcellular localization of Bazooka/Par-3 in Drosophila: no evidence for localization to the nucleus and the neuromuscular junction	3
Altered germline cyst formation and oogenesis in Tex14 mutant mice	2
Sexual dimorphism and the impact of aging on ball rolling-associated locomotor behavior in Drosophila	2
NEDD1-S411 phosphorylation plays a critical function in the coordination of microtubule nucleation during mitosis	2
Odours of cancerous mouse congeners: detection and attractiveness	2
An ode to multidisciplinarity: the ‘Bacteria Orchestrate Life’ international meeting	2
Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish	2
First person – Justin Varholick	2
EPCAM and TROP2 share a role in claudin stabilization and development of intestinal and extraintestinal epithelia in mice	2
Tetracycline-mediated fluorescence correlates with passage number and β-galactosidase activity in HeLa and HEK293T cells	2
First person – Bilal Akhtar	2
The influence of carbon dioxide on cerebral metabolism and oxygen consumption: combining multimodal monitoring with dynamic systems modelling	2
A methodological approach for collecting simultaneous measures of muscle, aponeurosis, and tendon behaviour during dynamic contractions	2
The story of Biology Open: a conversation with past and present Editors-in-Chief	2
Chk2-p53 and JNK in irradiation-induced cell death of hematopoietic progenitors and differentiated cells inDrosophilalarval lymph gland	2
Serotonin: an overlooked regulator of endocytosis and endosomal sorting?	2
Microbiome transplants may not improve health and longevity in Drosophila melanogaster	2
Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm	2
The C. elegans gene gvd-1 promotes late larval development and germ cell proliferation	2
First person – Guy Oldrieve	2
Influence of weighted downhill running training on serial sarcomere number and work loop performance in the rat soleus	2
Drosophila CRISPR/Cas9 mutants as tools to analyse cardiac filamin function and pathogenicity of human FLNC variants	2
Novel protocol to observe the intestinal tuft cell using transmission electron microscopy	2
Focal sources of FGF-10 promote the buckling morphogenesis of the embryonic airway epithelium	2
Cytoneme-like protrusion formation induced by LAR is promoted by receptor dimerization	2
Potentiating Vγ9Vδ2 T cell proliferation and assessing their cytotoxicity towards adherent cancer cells at the single cell level	2
Peripodial adherens junctions regulate Ajuba-Yorkie signaling to preserve fly eye morphology	2
First person – Jonathon McPhetres	2
Ocean acidification affects the expression of neuroplasticity and neuromodulation markers in seabream	2
Membrane structures and functional correlates in the bi-segmented eye lens of the cephalopod	2
First person – Kazuki Omata	2
First person – Gonzalo Quiroga-Artigas	2