(The TQCC of Microbiologyopen is 8. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-01-01 to 2024-01-01.)
Impact of antibiotics on the human microbiome and consequences for host health122
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health98
Environmental hotspots for antibiotic resistance genes50
Raman spectra‐based deep learning: A tool to identify microbial contamination45
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens42
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron42
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat39
Effects of exercise frequency on the gut microbiota in elderly individuals37
Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard35
Characterization of the core microbiome in tobacco leaves during aging34
Type VI secretion system of Pseudomonas aeruginosa is associated with biofilm formation but not environmental adaptation33
Bactericidal and virucidal activity of ethanol and povidone‐iodine32
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation29
A protocol for recombinant protein quantification by densitometry29
The day‐to‐day stability of the ruminal and fecal microbiota in lactating dairy cows28
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐478527
Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes26
Dietary effect of low fish meal aquafeed on gut microbiota in olive flounder (Paralichthys olivaceus) at different growth stages23
Assessment of microbiota present on a Portuguese historical stone convent using high‐throughput sequencing approaches23
Genomic insights into a plant growth‐promoting Pseudomonas koreensis strain with cyclic lipopeptide‐mediated antifungal activity22
Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau19
An oral health optimized diet reduces the load of potential cariogenic and periodontal bacterial species in the supragingival oral plaque: A randomized controlled pilot study19
Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments of Mongolian horses19
Phytoplankton‐derived zwitterionic gonyol and dimethylsulfonioacetate interfere with microbial dimethylsulfoniopropionate sulfur cycling17
Gut microbial diversity and stabilizing functions enhance the plateau adaptability of Tibetan wild ass (Equus kiang)17
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis17
Physiological and gut microbiome changes associated with low dietary protein level in genetically improved farmed tilapia (GIFT, Oreochromis niloticus) determined by 16S rRNA sequence analysis17
Penicillin‐binding protein PBP2a provides variable levels of protection toward different β‐lactams in Staphylococcus aureus RN422017
Impact of host intraspecies genetic variation, diet, and age on bacterial and fungal intestinal microbiota in tigers17
Multilocus sequence typing of Escherichia coli isolates from urinary tract infection patients and from fecal samples of healthy subjects in a college community16
Microbial community overlap between the phyllosphere and rhizosphere of three plants from Yongxing Island, South China Sea16
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment16
Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere16
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)15
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota15
Bacterial community dynamics in spontaneous sourdoughs made from wheat, spelt, and rye wholemeal flour15
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates15
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris15
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples14
Plasmodium berghei Gamete Egress Protein is required for fertility of both genders14
A novel way to synthesize pantothenate in bacteria involves β‐alanine synthase present in uracil degradation pathway14
Detection of methicillin‐resistant Staphylococcus aureus persistence in osteoblasts using imaging flow cytometry14
Sustainable production of FAEE biodiesel using the oleaginous yeast Yarrowia lipolytica14
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi14
Comparative analysis and gut bacterial community assemblages of grass carp and crucian carp in new lineages from the Dongting Lake area13
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses13
Comparison of swab types for collection and analysis of microorganisms13
Nutrient availability in tropical caves influences the dynamics of microbial biomass13
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing13
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora13
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota13
Effect of metabolosome encapsulation peptides on enzyme activity, coaggregation, incorporation, and bacterial microcompartment formation13
Links between S‐adenosylmethionine and Agr‐based quorum sensing for biofilm development in Listeria monocytogenes EGD‐e13
Porcine deltacoronavirus infection alters bacterial communities in the colon and feces of neonatal piglets12
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance12
The production of isoprene from cellulose using recombinant Clostridium cellulolyticum strains expressing isoprene synthase12
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake12
Transposon mutagenesis in Mycobacterium kansasii links a small RNA gene to colony morphology and biofilm formation and identifies 9,885 intragenic insertions that do not compromise colony outgr12
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap12
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals12
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum12
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood12
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate12
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis12
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization12
Deep tillage combined with biofertilizer following soil fumigation improved chrysanthemum growth by regulating the soil microbiome11
Recombinant spider silk coatings functionalized with enzymes targeting bacteria and biofilms11
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae11
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing11
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis11
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections11
Optimization of nitrogen source supply for enhanced biosynthesis and quality of poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) by extremely halophilic archaeon Haloferax mediterranei11
Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources11
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages11
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen11
Virioplankton distribution in the tropical western Pacific Ocean in the vicinity of a seamount11
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica10
Spo0J and SMC are required for normal chromosome segregation in Staphylococcus aureus10
Magnesium depletion extends fission yeast lifespan via general amino acid control activation10
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus10
Global trends of Pseudomonas aeruginosa biofilm research in the past two decades: A bibliometric study10
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq1010
Characteristics of Planococcus antioxidans sp. nov., an antioxidant‐producing strain isolated from the desert soil in the Qinghai–Tibetan Plateau10
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides10
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)10
Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae10
Evaluation and characterization of the predicted diguanylate cyclase‐encoding genes in Pseudomonas aeruginosa10
Proteomic analysis of Aspergillus niger 3.316 under heat stress10
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains10
Bacterioplankton community variation in Bohai Bay (China) is explained by joint effects of environmental and spatial factors10
Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acariformes: Syringophilidae)9
Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum9
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)9
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid9
Comparative transcriptome and phenotype analysis revealed the role and mechanism of ompR in the virulence of fish pathogenic Aeromonas hydrophila9
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial9
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics9
Multifunctional SEVA shuttle vectors for actinomycetes and Gram‐negative bacteria9
Variations in gut bacterial communities between lesser white‐fronted geese wintering at Caizi and Shengjin lakes in China8
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps8
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor8
A low‐cost pipeline for soil microbiome profiling8
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe8
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds8
Phylum‐level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert8
Long‐term stability of microbiome diversity and composition in fecal samples stored in eNAT medium8
Rapid high resolution melting assay to differentiate Streptococcus suis serotypes 2, 1/2, 1, and 148
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)8
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance8
The in vitro antibacterial effect of permethrin and formaldehyde on Staphylococcus aureus8
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures8
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India8
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis8