OOIR: Observatory of International Research

Papers

(The TQCC of Microbiologyopen is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-07-01 to 2024-07-01.)

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	222
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health	115
Environmental hotspots for antibiotic resistance genes	70
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron	62
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	53
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat	52
Raman spectra‐based deep learning: A tool to identify microbial contamination	51
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	39
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	32
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	22
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	21
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	21
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis	21
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	19
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	19
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	19
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	19
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	18
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	17
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	17
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	17
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	17
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood	16
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	16
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	16

Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere	16
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	15
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	15
Cultivation of the gut bacterium Prevotella copri DSM 18205^T using glucose and xylose as carbon sources	15
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	15
Comparison of swab types for collection and analysis of microorganisms	15
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	14
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	14
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	14
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	14
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	14
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance	14
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	14
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	14
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	13
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	13
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	13
A low‐cost pipeline for soil microbiome profiling	13
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	13
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	13
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri	13
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	12
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	12
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	12
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	12
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	12
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor	12
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	12
The cell cycle of Staphylococcus aureus: An updated review	11
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	11
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	11
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	11
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	10
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	10
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics	10
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	10
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	10
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study	9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)	9
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	9
Plants as a realized niche for Listeria monocytogenes	9
Microbial diversity of garden snail mucus	9
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	9
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	9
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	9
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis	8
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	8
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	8

Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study	8
Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals	8
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum	8
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi	8
The cytotoxic synergy between Clostridioides difficile toxin B and proinflammatory cytokines: an unholy alliance favoring the onset of Clostridioides difficile infection and relapses	8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)	8
The effect of calcium palmitate on bacteria associated with infant gut microbiota	8
Characterization of promoters in archaeal genomes based on DNA structural parameters	8
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning	8
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes	8
Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans	8
Bacterial‐like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis	7
Improved fluorescent Listeria spp. biosensors for analysis of antimicrobials by flow cytometry	7
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds	7
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes	7
Deciphering the role of host species for two Mycobacterium bovis genotypes from the European 3 clonal complex circulation within a cattle‐badger‐wild boar multihost system	7
Highly efficient export of a disulfide‐bonded protein to the periplasm and medium by the Tat pathway using CyDisCo in Escherichia coli	7
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study	7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection	7
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model	7
Recombinant expression of an l‐amino acid oxidase from the fungus Hebeloma cylindrosporum in Pichia pastoris including fermentation	7
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing	7
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens	7
Diagnosis ofHelicobacter pyloriinfection in the elderly using an immunochromatographic assay‐based stool antigen test	7
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice	7
Metabolic profiling analysis of the vitamin B₁₂ producer Propionibacterium freudenreichii	7