OOIR: Observatory of International Research

Papers

(The TQCC of Microbiologyopen is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-09-01 to 2024-09-01.)

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	259
Environmental hotspots for antibiotic resistance genes	74
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	56
Raman spectra‐based deep learning: A tool to identify microbial contamination	55
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat	54
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	43
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	33
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	23
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	22
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	22
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	21
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	21
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	20
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	20
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood	20
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	20
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	19
Comparison of swab types for collection and analysis of microorganisms	19
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	18
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	18
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	18
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	17
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	17
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	17
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	17

Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	16
Cultivation of the gut bacterium Prevotella copri DSM 18205^T using glucose and xylose as carbon sources	16
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	16
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	15
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	15
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	15
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	15
A low‐cost pipeline for soil microbiome profiling	14
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	14
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	14
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	14
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	14
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	14
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	14
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	14
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	14
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor	14
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	14
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	13
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	13
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	13
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	12
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	12
The cell cycle of Staphylococcus aureus: An updated review	12
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	11
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	11
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	11
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	11
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	11
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	10
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	10
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	10
Metabolic profiling analysis of the vitamin B₁₂ producer Propionibacterium freudenreichii	9
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)	9
Microbial diversity of garden snail mucus	9
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	9
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	9
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning	9
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	9
The effect of calcium palmitate on bacteria associated with infant gut microbiota	9
Improved fluorescent Listeria spp. biosensors for analysis of antimicrobials by flow cytometry	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	9
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes	9
Plants as a realized niche for Listeria monocytogenes	9
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study	9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)	9
Comparison of Actinobacteria communities from human‐impacted and pristine karst caves	9
Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals	8
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes	8

Insights into the bacterial community composition of farmed Caulerpa lentillifera: A comparison between contrasting health states	8
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study	8
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis	8
Characterization of promoters in archaeal genomes based on DNA structural parameters	8
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	8
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study	8
Deciphering the role of host species for two Mycobacterium bovis genotypes from the European 3 clonal complex circulation within a cattle‐badger‐wild boar multihost system	8
Bacterial‐like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis	8
Whole‐genome sequencing and genome‐scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use	7
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing	7
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model	7
Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples	7
Efficacy of antifungal agents against fungal spores: An in vitro study using microplate laser nephelometry and an artificially infected 3D skin model	7
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens	7
Identifying the best regimen for primary eradication of Helicobacter pylori: analysis of 240 cases	7
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice	7
Nitrite as a causal factor for nitrate‐dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains	7
Patterns of protist distribution and diversification in alpine lakes across Europe	7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection	7
Highly efficient export of a disulfide‐bonded protein to the periplasm and medium by the Tat pathway using CyDisCo in Escherichia coli	7