Microbiologyopen

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	222
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health	115
Environmental hotspots for antibiotic resistance genes	70
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron	62
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	53
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat	52
Raman spectra‐based deep learning: A tool to identify microbial contamination	51
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	39
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	32
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	22
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	21
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis	21
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	21
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	19
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	19
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	19
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	19
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	18
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	17
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	17
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	17
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	17
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	16
Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere	16
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood	16

Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	16
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	15
Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources	15
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	15
Comparison of swab types for collection and analysis of microorganisms	15
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	15
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	14
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	14
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	14
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	14
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	14
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance	14
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	14
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	14
A low‐cost pipeline for soil microbiome profiling	13
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	13
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	13
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri	13
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	13
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	13
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	13
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	12
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	12
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	12
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor	12
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	12
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	12
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	12
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	11
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	11
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	11
The cell cycle of Staphylococcus aureus: An updated review	11
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics	10
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	10
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	10
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	10
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	10
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)	9
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	9
Plants as a realized niche for Listeria monocytogenes	9
Microbial diversity of garden snail mucus	9
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	9
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	9
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	9
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study	9
Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals	8
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum	8
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi	8

The cytotoxic synergy between Clostridioides difficile toxin B and proinflammatory cytokines: an unholy alliance favoring the onset of Clostridioides difficile infection and relapses	8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)	8
The effect of calcium palmitate on bacteria associated with infant gut microbiota	8
Characterization of promoters in archaeal genomes based on DNA structural parameters	8
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning	8
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes	8
Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans	8
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis	8
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	8
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	8
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study	8
Highly efficient export of a disulfide‐bonded protein to the periplasm and medium by the Tat pathway using CyDisCo in Escherichia coli	7
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study	7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection	7
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model	7
Recombinant expression of an l‐amino acid oxidase from the fungus Hebeloma cylindrosporum in Pichia pastoris including fermentation	7
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing	7
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens	7
Diagnosis ofHelicobacter pyloriinfection in the elderly using an immunochromatographic assay‐based stool antigen test	7
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice	7
Metabolic profiling analysis of the vitamin B12 producer Propionibacterium freudenreichii	7
Bacterial‐like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis	7
Improved fluorescent Listeria spp. biosensors for analysis of antimicrobials by flow cytometry	7
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds	7
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes	7
Deciphering the role of host species for two Mycobacterium bovis genotypes from the European 3 clonal complex circulation within a cattle‐badger‐wild boar multihost system	7
Defects in DNA double‐strand break repair resensitize antibiotic‐resistant Escherichia coli to multiple bactericidal antibiotics	6
Nitrite as a causal factor for nitrate‐dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains	6
Whole‐genome sequencing and genome‐scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use	6
Characterization of the microbiota and chemical properties of pork loins during dry aging	6
Antimicrobial resistance profiles of Escherichia coli and prevalence of extended‐spectrum beta‐lactamase‐producing Enterobacteriaceae in calves from organic and conventional dairy farms in Swit	6
Staphylococcus aureusST228 and ST239 as models for expression studies of diverse markers during osteoblast infection and persistence	6
Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments	6
Detection of Arcobacter species in different intestinal compartments of broiler chicken during slaughter and processing	6
Attachment on mortar surfaces by cyanobacterium Gloeocapsa PCC 73106 and sequestration of CO2 by microbially induced calcium carbonate	6
Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1	6
Comparison of Actinobacteria communities from human‐impacted and pristine karst caves	6
Insights into the bacterial community composition of farmed Caulerpa lentillifera: A comparison between contrasting health states	6
Coaggregation properties of trimeric autotransporter adhesins	6
Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples	6
Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism	6
A preliminary examination of the bacterial, archaeal, and fungal rhizosphere microbiome in healthy and Phellinus noxius‐infected trees	6
Distribution of microbiota across different intestinal tract segments of a stranded dwarf minke whale, Balaenoptera acutorostrata	6
Efficacy of antifungal agents against fungal spores: An in vitro study using microplate laser nephelometry and an artificially infected 3D skin model	6
Patterns of protist distribution and diversification in alpine lakes across Europe	6
ON‐rep‐seq as a rapid and cost‐effective alternative to whole‐genome sequencing for species‐level identification and strain‐level discrimination of Listeria monocytogenes contamination in a sal	5
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies	5
Genomics of the “tumorigenes” clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov.	5
Assessing pH‐dependent activities of virulence factors secreted by Candida albicans	5
Eating eggplants as a cucurbit feeder: Dietary shifts affect the gut microbiome of the melon fly Zeugodacus cucurbitae (Diptera, Tephritidae)	5
Molecular epidemiology of Candida tropicalis isolated from urogenital tract infections	5
Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)	5
De novo biosynthesis of α‐aminoadipate via multi‐strategy metabolic engineering in Escherichia coli	5
Efficacy of Lactiplantibacillus plantarum 299 and 299v against nosocomial oropharyngeal pathogens in vitro and as an oral prophylactic treatment in a randomized, controlled clinical tria	5
Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock	5
Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid‐dominated Winogradsky column approach	5
Distinct microbiota assembly mechanisms revealed in different reconstruction stages during gut regeneration in the sea cucumber Apostichopus japonicus	5
Production of both l‐ and d‐ N‐acyl‐homoserine lactones by Burkholderia cepacia and Vibrio fischeri	5
Epipelagic microbiome of the Small Aral Sea: Metagenomic structure and ecological diversity	5
Evaluating models and assessment techniques for understanding oral biofilm complexity	5
Identification of a conserved N‐terminal domain in the first module of ACV synthetases	5
A comparative study of the fecal microbiota of gray seal pups and yearlings ‐ a marine mammal sentinel species	5
Phylogeography of the marine pathogen, Vibrio vulnificus, revealed the ancestral scenarios of its evolution	5
Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate	5
Comparison of four extraction methods for the detection of hepatitis B virus DNA in dried blood spot samples	5
A parasitic nematode induces dysbiosis in susceptible but not resistant gastropod hosts	4
Downregulation of ammonium uptake improves the growth and tolerance of Kluyveromyces marxianus at high temperature	4
Microbial approaches for the assessment of toothpaste efficacy against oral species: A method comparison	4
Tunable population dynamics in a synthetic filamentous coculture	4
Primary antibiotic resistance of Helicobacter pylori isolates is twofold more frequent in HIV‐positive than HIV‐negative individuals: A descriptive observational study	4
The CCAAT‐binding complex mediates azole susceptibility of Aspergillus fumigatus by suppressing SrbA expression and cleavage	4
Transcriptomic analysis of Streptococcus agalactiae periprosthetic joint infection	4
Biocatalytic quantification of α‐glucan in marine particulate organic matter	4
Variation in pH gradients and FLO11 expression in mat biofilms from environmental isolates of the yeast Saccharomyces cerevisiae	4
Evaluation of the occurrence of pathogenic free‐living amoeba and bacteria in 20 public indoor swimming pool facilities	4
Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution‐derived hydrogen	4
Gene expression responses to Zika virus infection in peripheral blood mononuclear cells from pregnant and non‐pregnant women	4
Analyses of locomotion, wing morphology, and microbiome in Drosophila nigrosparsa after recovery from antibiotics	4
Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging	4
Localization of the CotY and ExsY proteins to the exosporium basal layer of Bacillus anthracis	4

Clp ATPases differentially affect natural competence development in Streptococcus mutans	4
Relationship between the Rod complex and peptidoglycan structure in Escherichia coli	4
Development of a novel high resolution melting assay for identification and differentiation of all known 19 serovars of Actinobacillus pleuropneumoniae	4
Identifying the best regimen for primary eradication of Helicobacter pylori: analysis of 240 cases	4
Evaluation of two xenobiotic reductases from Pseudomonas putida for their suitability for magnetic nanoparticle‐directed enzyme prodrug therapy as a novel approach to cancer treatment	4
Identification of acetylated diether lipids in halophilic Archaea	4
Novel multiplex TaqMan assay for differentiation of the four major pathogenic Brachyspira species in swine	3
Biological and synthetic surfactant exposure increases antimicrobial gene occurrence in a freshwater mixed microbial biofilm environment	3
An improved method for intracellular DNA (iDNA) recovery from terrestrial environments	3
High prevalence of blaCTX‐M‐15 type extended‐spectrum beta‐lactamases in Gambian hooded vultures (Necrosyrtes monachus): A threatened species with substantial human interactio	3
A culture‐independent approach to understanding the role of soil fungal communities in Bromus tectorum stand failure	3
Protein with negative surface charge distribution, Bnr1, shows characteristics of a DNA‐mimic protein and may be involved in the adaptation of Burkholderia cenocepacia	3
Correlations between available primary amines, endospore coat thickness, and alkaline glutaraldehyde sensitivity for spores of select Bacillus species	3
Non‐ribosomal insights into ribosomal P2 protein in Plasmodium falciparum‐infected erythrocytes	3
Polyunsaturated fatty acids cause physiological and behavioral changes in Vibrio alginolyticus and Vibrio fischeri	3
Genome comparison reveals that Halobacterium salinarum 63‐R2 is the origin of the twin laboratory strains NRC‐1 and R1	3
Molecular characterization of clinical isolates from vascular access infection: A single‐institution study	3
A Pichia biosensor for high‐throughput analyses of compounds that can influence mosquito behavior	3
Adaptive laboratory evolution for increased temperature tolerance of the diatom Nitzschia inconspicua	3
Isolation and test of novel yeast strains with lignin usage capability and phenolic compound resistance	3
Characterizing viral samples using machine learning for Raman and absorption spectroscopy	3
Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice	3
Inhibition of microbial production of the malodorous substance isovaleric acid by 4,4ʹ dichloro 2‐hydroxydiphenyl ether (DCPP)	3
Transcriptomics‐guided identification of an algicidal protease of the marine bacterium Kordia algicida OT‐1	3
Analysis of laccase‐like enzymes secreted by fungi isolated from a cave in northern Spain	3
Efficiency of the synthetic self‐splicing RiboJ ribozyme is robust to cis‐ and trans‐changes in genetic background	3
Detection of antimicrobial resistance genes in urban air	3