Microbiologyopen

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	273
Environmental hotspots for antibiotic resistance genes	77
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	59
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	44
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	36
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	23
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	23
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	22
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	22
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	22
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	22
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	20
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	20
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	19
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	19
Comparison of swab types for collection and analysis of microorganisms	19
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	18
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	18
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	18
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	17
Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources	17
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	17
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	17
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	16
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	16

Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	16
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	15
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	15
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	15
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	15
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	15
A low‐cost pipeline for soil microbiome profiling	14
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor	14
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	14
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	14
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	14
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	14
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	14
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	14
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	14
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	14
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	13
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	13
The cell cycle of Staphylococcus aureus: An updated review	13
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	12
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	12
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	12
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	11
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	11
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	11
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	11
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	11
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	10
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	10
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	10
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	10
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study	9
The effect of calcium palmitate on bacteria associated with infant gut microbiota	9
Microbial diversity of garden snail mucus	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9
Metabolic profiling analysis of the vitamin B12 producer Propionibacterium freudenreichii	9
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes	9
Improved fluorescent Listeria spp. biosensors for analysis of antimicrobials by flow cytometry	9
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	9
Deciphering the role of host species for two Mycobacterium bovis genotypes from the European 3 clonal complex circulation within a cattle‐badger‐wild boar multihost system	9
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning	9
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	9
The bacterial and fungal community composition in time and space in the nest mounds of the antFormicaexsecta(Hymenoptera: Formicidae)	9
Characterization of promoters in archaeal genomes based on DNA structural parameters	9
Comparison of Actinobacteria communities from human‐impacted and pristine karst caves	9
Plants as a realized niche for Listeria monocytogenes	9
Nitrite as a causal factor for nitrate‐dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains	8
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes	8
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study	8
Insights into the bacterial community composition of farmed Caulerpa lentillifera: A comparison between contrasting health states	8

Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals	8
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis	8
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	8
Whole‐genome sequencing and genome‐scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use	7
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice	7
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing	7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection	7
Efficacy of antifungal agents against fungal spores: An in vitro study using microplate laser nephelometry and an artificially infected 3D skin model	7
Highly efficient export of a disulfide‐bonded protein to the periplasm and medium by the Tat pathway using CyDisCo in Escherichia coli	7
Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples	7
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model	7
Patterns of protist distribution and diversification in alpine lakes across Europe	7
Assessing pH‐dependent activities of virulence factors secreted by Candida albicans	6
Antimicrobial resistance profiles of Escherichia coli and prevalence of extended‐spectrum beta‐lactamase‐producing Enterobacteriaceae in calves from organic and conventional dairy farms in Swit	6
Defects in DNA double‐strand break repair resensitize antibiotic‐resistant Escherichia coli to multiple bactericidal antibiotics	6
Attachment on mortar surfaces by cyanobacterium Gloeocapsa PCC 73106 and sequestration of CO2 by microbially induced calcium carbonate	6
Staphylococcus aureusST228 and ST239 as models for expression studies of diverse markers during osteoblast infection and persistence	6
Characterization of the microbiota and chemical properties of pork loins during dry aging	6
Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)	6
Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments	6
Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1	6
Comparison of four extraction methods for the detection of hepatitis B virus DNA in dried blood spot samples	6
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies	6
Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism	6
De novo biosynthesis of α‐aminoadipate via multi‐strategy metabolic engineering in Escherichia coli	5
Deeper below the surface—transcriptional changes in selected genes ofClostridium beijerinckiiin response to butanol shock	5
Genomics of the “tumorigenes” clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov.	5
Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid‐dominated Winogradsky column approach	5
Distinct microbiota assembly mechanisms revealed in different reconstruction stages during gut regeneration in the sea cucumber Apostichopus japonicus	5
ON‐rep‐seq as a rapid and cost‐effective alternative to whole‐genome sequencing for species‐level identification and strain‐level discrimination of Listeria monocytogenes contamination in a sal	5
Efficacy of Lactiplantibacillus plantarum 299 and 299v against nosocomial oropharyngeal pathogens in vitro and as an oral prophylactic treatment in a randomized, controlled clinical tria	5
Evaluating models and assessment techniques for understanding oral biofilm complexity	5
Characterizing viral samples using machine learning for Raman and absorption spectroscopy	5
Downregulation of ammonium uptake improves the growth and tolerance of Kluyveromyces marxianus at high temperature	5
Eating eggplants as a cucurbit feeder: Dietary shifts affect the gut microbiome of the melon flyZeugodacus cucurbitae(Diptera, Tephritidae)	5
Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate	5
Epipelagic microbiome of the Small Aral Sea: Metagenomic structure and ecological diversity	5
The CCAAT‐binding complex mediates azole susceptibility of Aspergillus fumigatus by suppressing SrbA expression and cleavage	5
Identification of a conserved N‐terminal domain in the first module of ACV synthetases	5
Biocatalytic quantification of α‐glucan in marine particulate organic matter	5
A comparative study of the fecal microbiota of gray seal pups and yearlings ‐ a marine mammal sentinel species	5
Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution‐derived hydrogen	5
Production of both l‐ and d‐ N‐acyl‐homoserine lactones by Burkholderia cepacia and Vibrio fischeri	5
Microbial approaches for the assessment of toothpaste efficacy against oral species: A method comparison	4
Tunable population dynamics in a synthetic filamentous coculture	4
Primary antibiotic resistance of Helicobacter pylori isolates is twofold more frequent in HIV‐positive than HIV‐negative individuals: A descriptive observational study	4
An improved method for intracellular DNA (iDNA) recovery from terrestrial environments	4
Analyses of locomotion, wing morphology, and microbiome in Drosophila nigrosparsa after recovery from antibiotics	4
Localization of the CotY and ExsY proteins to the exosporium basal layer of Bacillus anthracis	4
Variation in pH gradients and FLO11 expression in mat biofilms from environmental isolates of the yeast Saccharomyces cerevisiae	4
Clp ATPases differentially affect natural competence development in Streptococcus mutans	4
Relationship between the Rod complex and peptidoglycan structure in Escherichia coli	4
Gene expression responses to Zika virus infection in peripheral blood mononuclear cells from pregnant and non‐pregnant women	4
Transcriptomic analysis of Streptococcus agalactiae periprosthetic joint infection	4
Identification of acetylated diether lipids in halophilic Archaea	4
A parasitic nematode induces dysbiosis in susceptible but not resistant gastropod hosts	4
Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus‐specific primers	4
Evaluation of the occurrence of pathogenic free‐living amoeba and bacteria in 20 public indoor swimming pool facilities	4
Analysis of laccase‐like enzymes secreted by fungi isolated from a cave in northern Spain	4
Development of a novel high resolution melting assay for identification and differentiation of all known 19 serovars of Actinobacillus pleuropneumoniae	4
Measuring the absolute abundance of the microbiome by adding yeast containing 16S rRNA gene from a hyperthermophile	4
Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging	4
Isolation of extended‐spectrum β‐lactamase‐producing Escherichia coli from Japanese red fox (Vulpes vulpes japonica)	4
Inhibition of microbial production of the malodorous substance isovaleric acid by 4,4ʹ dichloro 2‐hydroxydiphenyl ether (DCPP)	4
Transcriptomics‐guided identification of an algicidal protease of the marine bacterium Kordia algicida OT‐1	3
Non‐ribosomal insights into ribosomal P2 protein in Plasmodium falciparum‐infected erythrocytes	3
Genome comparison reveals that Halobacterium salinarum 63‐R2 is the origin of the twin laboratory strains NRC‐1 and R1	3
The evolution of alkaliphilic biofilm communities in response to extreme alkaline pH values	3
Protein with negative surface charge distribution, Bnr1, shows characteristics of a DNA‐mimic protein and may be involved in the adaptation of Burkholderia cenocepacia	3
Detection of antimicrobial resistance genes in urban air	3
Polyunsaturated fatty acids cause physiological and behavioral changes in Vibrio alginolyticus and Vibrio fischeri	3
A culture‐independent approach to understanding the role of soil fungal communities in Bromus tectorum stand failure	3
Brucella ceti and Brucella pinnipedialis genome characterization unveils genetic features that highlight their zoonotic potential	3
High prevalence of blaCTX‐M‐15 type extended‐spectrum beta‐lactamases in Gambian hooded vultures (Necrosyrtes monachus): A threatened species with substantial human interactio	3
A Pichia biosensor for high‐throughput analyses of compounds that can influence mosquito behavior	3
Efficiency of the synthetic self‐splicing RiboJ ribozyme is robust to cis‐ and trans‐changes in genetic background	3
Clay‐associated microbial communities and their relevance for a nuclear waste repository in the Opalinus Clay rock formation	3
Antibiofilm assay for antimicrobial peptides combating the sulfate‐reducing bacteria Desulfovibrio vulgaris	3
Novel multiplex TaqMan assay for differentiation of the four major pathogenic Brachyspira species in swine	3
Biological and synthetic surfactant exposure increases antimicrobial gene occurrence in a freshwater mixed microbial biofilm environment	3

What is the role of microbial biotechnology and genetic engineering in medicine?	3
Adaptive laboratory evolution for increased temperature tolerance of the diatom Nitzschia inconspicua	3
Isolation and test of novel yeast strains with lignin usage capability and phenolic compound resistance	3
Cattle–compost–soil: The transfer of antibiotic resistance in livestock agriculture	3
Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice	3
Heterogeneous glycosylation and methylation of the Aeromonas caviae flagellin	2
Aedes albopictus microbiome derives from environmental sources and partitions across distinct host tissues	2
Assessing a transmission network of Mycobacterium tuberculosis in an African city using single nucleotide polymorphism threshold analysis	2
An in‐house 45‐plex array for the detection of antimicrobial resistance genes in Gram‐positive bacteria	2
Isolation, biochemical characterization, and genome sequencing of two high‐quality genomes of a novel chitinolytic Jeongeupia species	2
Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater	2
Binding of the kringle‐2 domain of human plasminogen to streptococcal PAM‐type M‐protein causes dissociation of PAM dimers	2
Comparison of DNA purification methods for high‐throughput sequencing of fungal communities from wine fermentation	2
Characterization of the genetic switch from phage ɸ13 important for Staphylococcus aureus colonization in humans	2
Multidrug‐resistant Enterococcus faecium strains enter the Norwegian marine environment through treated sewage	2
Characterization of methicillin‐resistant Staphylococcus aureus strains colonizing the nostrils of Spanish children	2
Bacteriocin‐phage interaction (BaPI): Phage predation of Lactococcus in the presence of bacteriocins	2
Dynamic interspecies interactions and robustness in a four‐species model biofilm	2
Dynamic interactions between Candida albicans and different streptococcal species in a multispecies oral biofilm	2
Circulation of an atypical hepatitis C virus (HCV) strain at a dialysis unit in northeast India	2
Comparative genomic and metabolomic study of three Streptomyces sp. differing in biological activity	2
Identification of novel arsenic resistance genes in yeast	2
Characterization and microsatellite marker development for a common bark and ambrosia beetle associate, Geosmithia obscura	2
Magnaporthe oryzae as an expression host for the production of the unspecific peroxygenase AaeUPO from the basidiomycete Agrocybe aegerita	2