(The median citation count of Microbiologyopen is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-01-01 to 2024-01-01.)
Impact of antibiotics on the human microbiome and consequences for host health122
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health98
Environmental hotspots for antibiotic resistance genes50
Raman spectra‐based deep learning: A tool to identify microbial contamination45
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens42
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron42
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat39
Effects of exercise frequency on the gut microbiota in elderly individuals37
Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard35
Characterization of the core microbiome in tobacco leaves during aging34
Type VI secretion system of Pseudomonas aeruginosa is associated with biofilm formation but not environmental adaptation33
Bactericidal and virucidal activity of ethanol and povidone‐iodine32
A protocol for recombinant protein quantification by densitometry29
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation29
The day‐to‐day stability of the ruminal and fecal microbiota in lactating dairy cows28
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐478527
Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes26
Dietary effect of low fish meal aquafeed on gut microbiota in olive flounder (Paralichthys olivaceus) at different growth stages23
Assessment of microbiota present on a Portuguese historical stone convent using high‐throughput sequencing approaches23
Genomic insights into a plant growth‐promoting Pseudomonas koreensis strain with cyclic lipopeptide‐mediated antifungal activity22
Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments of Mongolian horses19
Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau19
An oral health optimized diet reduces the load of potential cariogenic and periodontal bacterial species in the supragingival oral plaque: A randomized controlled pilot study19
Penicillin‐binding protein PBP2a provides variable levels of protection toward different β‐lactams in Staphylococcus aureus RN422017
Impact of host intraspecies genetic variation, diet, and age on bacterial and fungal intestinal microbiota in tigers17
Phytoplankton‐derived zwitterionic gonyol and dimethylsulfonioacetate interfere with microbial dimethylsulfoniopropionate sulfur cycling17
Gut microbial diversity and stabilizing functions enhance the plateau adaptability of Tibetan wild ass (Equus kiang)17
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis17
Physiological and gut microbiome changes associated with low dietary protein level in genetically improved farmed tilapia (GIFT, Oreochromis niloticus) determined by 16S rRNA sequence analysis17
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment16
Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere16
Multilocus sequence typing of Escherichia coli isolates from urinary tract infection patients and from fecal samples of healthy subjects in a college community16
Microbial community overlap between the phyllosphere and rhizosphere of three plants from Yongxing Island, South China Sea16
Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris15
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)15
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota15
Bacterial community dynamics in spontaneous sourdoughs made from wheat, spelt, and rye wholemeal flour15
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates15
Detection of methicillin‐resistant Staphylococcus aureus persistence in osteoblasts using imaging flow cytometry14
Sustainable production of FAEE biodiesel using the oleaginous yeast Yarrowia lipolytica14
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi14
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples14
Plasmodium berghei Gamete Egress Protein is required for fertility of both genders14
A novel way to synthesize pantothenate in bacteria involves β‐alanine synthase present in uracil degradation pathway14
Nutrient availability in tropical caves influences the dynamics of microbial biomass13
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing13
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora13
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota13
Effect of metabolosome encapsulation peptides on enzyme activity, coaggregation, incorporation, and bacterial microcompartment formation13
Links between S‐adenosylmethionine and Agr‐based quorum sensing for biofilm development in Listeria monocytogenes EGD‐e13
Comparative analysis and gut bacterial community assemblages of grass carp and crucian carp in new lineages from the Dongting Lake area13
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses13
Comparison of swab types for collection and analysis of microorganisms13
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood12
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate12
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis12
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization12
Porcine deltacoronavirus infection alters bacterial communities in the colon and feces of neonatal piglets12
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance12
The production of isoprene from cellulose using recombinant Clostridium cellulolyticum strains expressing isoprene synthase12
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake12
Transposon mutagenesis in Mycobacterium kansasii links a small RNA gene to colony morphology and biofilm formation and identifies 9,885 intragenic insertions that do not compromise colony outgr12
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap12
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals12
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum12
Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources11
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages11
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen11
Virioplankton distribution in the tropical western Pacific Ocean in the vicinity of a seamount11
Deep tillage combined with biofertilizer following soil fumigation improved chrysanthemum growth by regulating the soil microbiome11
Recombinant spider silk coatings functionalized with enzymes targeting bacteria and biofilms11
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae11
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing11
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis11
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections11
Optimization of nitrogen source supply for enhanced biosynthesis and quality of poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) by extremely halophilic archaeon Haloferax mediterranei11
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq1010
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides10
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)10
Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae10
Evaluation and characterization of the predicted diguanylate cyclase‐encoding genes in Pseudomonas aeruginosa10
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains10
Proteomic analysis of Aspergillus niger 3.316 under heat stress10
Bacterioplankton community variation in Bohai Bay (China) is explained by joint effects of environmental and spatial factors10
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica10
Spo0J and SMC are required for normal chromosome segregation in Staphylococcus aureus10
Magnesium depletion extends fission yeast lifespan via general amino acid control activation10
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus10
Global trends of Pseudomonas aeruginosa biofilm research in the past two decades: A bibliometric study10
Characteristics of Planococcus antioxidans sp. nov., an antioxidant‐producing strain isolated from the desert soil in the Qinghai–Tibetan Plateau10
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial9
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics9
Multifunctional SEVA shuttle vectors for actinomycetes and Gram‐negative bacteria9
Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acariformes: Syringophilidae)9
Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum9
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)9
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid9
Comparative transcriptome and phenotype analysis revealed the role and mechanism of ompR in the virulence of fish pathogenic Aeromonas hydrophila9
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance8
The in vitro antibacterial effect of permethrin and formaldehyde on Staphylococcus aureus8
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures8
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India8
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis8
Variations in gut bacterial communities between lesser white‐fronted geese wintering at Caizi and Shengjin lakes in China8
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps8
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor8
A low‐cost pipeline for soil microbiome profiling8
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe8
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds8
Phylum‐level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert8
Long‐term stability of microbiome diversity and composition in fecal samples stored in eNAT medium8
Rapid high resolution melting assay to differentiate Streptococcus suis serotypes 2, 1/2, 1, and 148
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)8
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐57
Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans7
Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals7
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis7
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli7
Development of a M9‐based urea medium (M9U) for sensitive and real‐time monitoring of ureolytic activity of bacteria and cell‐free urease7
Regulation of cid and lrg expression by CodY in Streptococcus mutans7
The cell cycle of Staphylococcus aureus: An updated review7
Biosynthesis and characterization of a recombinant eukaryotic allophycocyanin using prokaryotic accessory enzymes7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection7
In vivo and in silico screening for antimicrobial compounds from cyanobacteria7
UF‐5000 flow cytometer: A new technology to support microbiologists’ interpretation of suspected urinary tract infections7
The cytotoxic synergy between Clostridioides difficile toxin B and proinflammatory cytokines: an unholy alliance favoring the onset of Clostridioides difficile infection and relapses7
Plants as a realized niche for Listeria monocytogenes7
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study7
Prevalence and antimicrobial susceptibility of Salmonella in poultry farms and in‐contact humans in Adama and Modjo towns, Ethiopia7
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds7
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum7
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis7
Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K16
Diversity and specificity of the bacterial community in Chinese horse milk cheese6
Metabolic profiling analysis of the vitamin B12 producer Propionibacterium freudenreichii6
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings6
Niche partitioning of bacterial communities along the stratified water column in the Black Sea6
Composition, diversity, and activity of aerobic ammonia‐oxidizing Bacteria and Archaea in the intertidal sands of a grand strand South Carolina beach6
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data6
Reliability of stool microbiome methods for DNA yields and sequencing among infants and young children6
A membrane‐bound [NiFe]‐hydrogenase large subunit precursor whose C‐terminal extension is not essential for cofactor incorporation but guarantees optimal maturation6
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes6
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning6
DNA stable‐isotope probing reveals potential key players for microbial decomposition and degradation of diatom‐derived marine particulate matter6
Phylogenetic analysis of Leuconostoc and Lactobacillus species isolated from sugarcane processing streams6
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes6
Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments6
Development of a standardized Gram stain procedure for bacteria and inflammatory cells using an automated staining instrument6
Microbial diversity of garden snail mucus6
Pantoea sp. P37 as a novel nonpathogenic host for the heterologous production of rhamnolipids6
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study6
Coaggregation properties of trimeric autotransporter adhesins6
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing6
Molecular ecological network analysis of the response of soil microbial communities to depth gradients in farmland soils6
Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism5
Nitrite as a causal factor for nitrate‐dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains5
Distinct microbiota assembly mechanisms revealed in different reconstruction stages during gut regeneration in the sea cucumber Apostichopus japonicus5
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model5
Molecular epidemiology of Candida tropicalis isolated from urogenital tract infections5
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies5
Patterns of protist distribution and diversification in alpine lakes across Europe5
Whole‐genome sequencing and genome‐scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use5
Variation in the microbiota across different developmental stages of Aedes albopictus is affected by ampicillin exposure5
Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid‐dominated Winogradsky column approach5
Comparison of Actinobacteria communities from human‐impacted and pristine karst caves5
Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples5
Isolation of two novel reassortant H3N6 avian influenza viruses from long‐distance migratory birds in Jiangxi Province, China5
The optimization system for preparation of TG1 competent cells and electrotransformation5
Efficacy of Lactiplantibacillus plantarum 299 and 299v against nosocomial oropharyngeal pathogens in vitro and as an oral prophylactic treatment in a randomized, controlled clinical tria5
Bacterial‐like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis5
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study5
Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock5
Diagnosis ofHelicobacter pyloriinfection in the elderly using an immunochromatographic assay‐based stool antigen test5
Phylogeography of the marine pathogen, Vibrio vulnificus, revealed the ancestral scenarios of its evolution5
Identification of a conserved N‐terminal domain in the first module of ACV synthetases5
Recombinant expression of an l‐amino acid oxidase from the fungus Hebeloma cylindrosporum in Pichia pastoris including fermentation5
Staphylococcus aureusST228 and ST239 as models for expression studies of diverse markers during osteoblast infection and persistence5
Burkholderia cenocepacia–host cell contact controls the transcription activity of the trimeric autotransporter adhesin BCAM2418 gene5
The effect of calcium palmitate on bacteria associated with infant gut microbiota4
A preliminary examination of the bacterial, archaeal, and fungal rhizosphere microbiome in healthy and Phellinus noxius‐infected trees4
Characterization of promoters in archaeal genomes based on DNA structural parameters4
Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate4
Distribution of microbiota across different intestinal tract segments of a stranded dwarf minke whale, Balaenoptera acutorostrata4
Rhodobacter capsulatus AnfA is essential for production of Fe‐nitrogenase proteins but dispensable for cofactor biosynthesis and electron supply4
Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)4
Identification of an anaerobic bacterial consortium that degrades roxarsone4
Attachment on mortar surfaces by cyanobacterium Gloeocapsa PCC 73106 and sequestration of CO2 by microbially induced calcium carbonate4
Cabbage looper (Trichoplusia ni Hübner) labial glands contain unique bacterial flora in contrast with their alimentary canal, mandibular glands, and Malpighian tubules4
A comparative study of the fecal microbiota of gray seal pups and yearlings ‐ a marine mammal sentinel species4
Isolation of an antimicrobial‐resistant, biofilm‐forming, Klebsiella grimontii isolate from a reusable water bottle4
Tunable population dynamics in a synthetic filamentous coculture4
Limited diagnostic possibilities for bloodstream infections with broad‐range methods: A promising PCR/electrospray ionization‐mass spectrometry platform is no longer available4
Evaluation of two xenobiotic reductases from Pseudomonas putida for their suitability for magnetic nanoparticle‐directed enzyme prodrug therapy as a novel approach to cancer treatment4
Localization of the CotY and ExsY proteins to the exosporium basal layer of Bacillus anthracis4
Evaluation of the occurrence of pathogenic free‐living amoeba and bacteria in 20 public indoor swimming pool facilities4
Eating eggplants as a cucurbit feeder: Dietary shifts affect the gut microbiome of the melon fly Zeugodacus cucurbitae (Diptera, Tephritidae)4
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice4
Gene expression responses to Zika virus infection in peripheral blood mononuclear cells from pregnant and non‐pregnant women4
ON‐rep‐seq as a rapid and cost‐effective alternative to whole‐genome sequencing for species‐level identification and strain‐level discrimination of Listeria monocytogenes contamination in a sal4
Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging4
Detection of Arcobacter species in different intestinal compartments of broiler chicken during slaughter and processing3
Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice3
Polyunsaturated fatty acids cause physiological and behavioral changes in Vibrio alginolyticus and Vibrio fischeri3
Genomics of the “tumorigenes” clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov.3
Individual Nudix hydrolases affect diverse features of Pseudomonas aeruginosa3
Characterization of the microbiota and chemical properties of pork loins during dry aging3
Comparison of four extraction methods for the detection of hepatitis B virus DNA in dried blood spot samples3
Production of both l‐ and dN‐acyl‐homoserine lactones by Burkholderia cepacia and Vibrio fischeri3
Detection of antimicrobial resistance genes in urban air3
Identification of acetylated diether lipids in halophilic Archaea3
Molecular characterization of clinical isolates from vascular access infection: A single‐institution study3
Transcriptomic analysis of Streptococcus agalactiae periprosthetic joint infection3
Identification and functional characterization of NAD(P)+‐dependent meso‐diaminopimelate dehydrogenase from Numidum massiliense3
Downregulation of ammonium uptake improves the growth and tolerance of Kluyveromyces marxianus at high temperature3
A Pichia biosensor for high‐throughput analyses of compounds that can influence mosquito behavior3
Antimicrobial resistance profiles of Escherichia coli and prevalence of extended‐spectrum beta‐lactamase‐producing Enterobacteriaceae in calves from organic and conventional dairy farms in Swit3
Efficacy of antifungal agents against fungal spores: An in vitro study using microplate laser nephelometry and an artificially infected 3D skin model3
Identifying the best regimen for primary eradication of Helicobacter pylori: analysis of 240 cases3
Defects in DNA double‐strand break repair resensitize antibiotic‐resistant Escherichia coli to multiple bactericidal antibiotics3
De novo biosynthesis of α‐aminoadipate via multi‐strategy metabolic engineering in Escherichia coli3
A parasitic nematode induces dysbiosis in susceptible but not resistant gastropod hosts3
Clp ATPases differentially affect natural competence development in Streptococcus mutans3
Analysis of laccase‐like enzymes secreted by fungi isolated from a cave in northern Spain3
Genomic integration of unclonable gene expression cassettes in Saccharomyces cerevisiae using rapid cloning‐free workflows3
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor3
Primary antibiotic resistance of Helicobacter pylori isolates is twofold more frequent in HIV‐positive than HIV‐negative individuals: A descriptive observational study3