Microbiologyopen

Article	Citations
Impact of antibiotics on the human microbiome and consequences for host health	161
The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health	104
Environmental hotspots for antibiotic resistance genes	55
Microbial interaction between the succinate‐utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron	48
Raman spectra‐based deep learning: A tool to identify microbial contamination	47
Antimicrobial properties of Lactobacillus cell‐free supernatants against multidrug‐resistant urogenital pathogens	45
Mobile fosfomycin resistance genes in Enterobacteriaceae—An increasing threat	43
Effects of exercise frequency on the gut microbiota in elderly individuals	40
Bactericidal and virucidal activity of ethanol and povidone‐iodine	36
Microbial community and metabolic function analysis of cigar tobacco leaves during fermentation	34
A protocol for recombinant protein quantification by densitometry	32
Microbiota succession during aerobic stability of maize silage inoculated with Lentilactobacillus buchneri NCIMB 40788 and Lentilactobacillus hilgardii CNCM‐I‐4785	31
The day‐to‐day stability of the ruminal and fecal microbiota in lactating dairy cows	29
Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes	27
Assessment of microbiota present on a Portuguese historical stone convent using high‐throughput sequencing approaches	24
Genomic insights into a plant growth‐promoting Pseudomonas koreensis strain with cyclic lipopeptide‐mediated antifungal activity	24
Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments of Mongolian horses	21
An oral health optimized diet reduces the load of potential cariogenic and periodontal bacterial species in the supragingival oral plaque: A randomized controlled pilot study	21
Impact of host intraspecies genetic variation, diet, and age on bacterial and fungal intestinal microbiota in tigers	21
Penicillin‐binding protein PBP2a provides variable levels of protection toward different β‐lactams in Staphylococcus aureus RN4220	21
Physiological and gut microbiome changes associated with low dietary protein level in genetically improved farmed tilapia (GIFT, Oreochromis niloticus) determined by 16S rRNA sequence analysis	20
Captivity affects diversity, abundance, and functional pathways of gut microbiota in the northern grass lizard Takydromus septentrionalis	20
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi	20
Optimized bacterial DNA isolation method for microbiome analysis of human tissues	19
Gut microbial diversity and stabilizing functions enhance the plateau adaptability of Tibetan wild ass (Equus kiang)	18

Schiff bases of sulphonamides as a new class of antifungal agent against multidrug‐resistant Candida auris	18
Plasmodium berghei Gamete Egress Protein is required for fertility of both genders	18
Multilocus sequence typing of Escherichia coli isolates from urinary tract infection patients and from fecal samples of healthy subjects in a college community	17
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment	17
Seasonal variation of viral infections between the eastern honey bee (Apis cerana) and the western honey bee (Apis mellifera)	17
Microbial community overlap between the phyllosphere and rhizosphere of three plants from Yongxing Island, South China Sea	16
Low‐carbohydrate high‐fat weight reduction diet induces changes in human gut microbiota	16
Development and clinical validation of a droplet digital PCR assay for detecting Acinetobacter baumannii and Klebsiella pneumoniae in patients with suspected bloodstream infections	16
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates	16
Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance	16
Pseudomonas glycinae sp. nov. isolated from the soybean rhizosphere	16
Porcine deltacoronavirus infection alters bacterial communities in the colon and feces of neonatal piglets	15
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples	15
Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments	15
Sustainable production of FAEE biodiesel using the oleaginous yeast Yarrowia lipolytica	15
Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq‐controlled quorum sensing	15
Nutrient availability in tropical caves influences the dynamics of microbial biomass	14
Detection of methicillin‐resistant Staphylococcus aureus persistence in osteoblasts using imaging flow cytometry	14
Spatially explicit depiction of a floral epiphytic bacterial community reveals role for environmental filtering within petals	14
Characterization of the biocontrol activity of three bacterial isolates against the phytopathogen Erwinia amylovora	14
Links between S‐adenosylmethionine and Agr‐based quorum sensing for biofilm development in Listeria monocytogenes EGD‐e	14
Shining light on multi‐drug resistant Candida auris: Ultraviolet‐C disinfection, wavelength sensitivity, and prevention of biofilm formation of an emerging yeast pathogen	14
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap	13
Cultivation of the gut bacterium Prevotella copri DSM 18205T using glucose and xylose as carbon sources	13
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood	13
Comparative analysis and gut bacterial community assemblages of grass carp and crucian carp in new lineages from the Dongting Lake area	13
Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis	13
Vertical structure of the bacterial diversity in meromictic Fayetteville Green Lake	13
Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota	13
Isolation and characterization of fast‐growing green snow bacteria from coastal East Antarctica	13
Antifungal mechanism of Bacillus amyloliquefaciens strain GKT04 against Fusarium wilt revealed using genomic and transcriptomic analyses	13
Comparison of swab types for collection and analysis of microorganisms	13
Expression of degQ gene and its effect on lipopeptide production as well as formation of secretory proteases in Bacillus subtilis strains	13
Biofilm formation in Acinetobacter baumannii was inhibited by PAβN while it had no association with antibiotic resistance	12
Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing	12
Synthetic pro‐peptide design to enhance the secretion of heterologous proteins by Saccharomyces cerevisiae	12
Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae	12
Living in a bottle: Bacteria from sediment‐associated Mediterranean waste and potential growth on polyethylene terephthalate	12
Deletion of Rap‐Phr systems in Bacillus subtilis influences in vitro biofilm formation and plant root colonization	12
Hexyl gallate for the control of citrus canker caused by Xanthomonas citri subsp citri	12
Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae	12
Magnesium depletion extends fission yeast lifespan via general amino acid control activation	12
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages	12
Combining in vitro and in vivo screening to identify efficient Pseudomonas biocontrol strains against the phytopathogenic bacterium Ralstonia solanacearum	12
Virioplankton distribution in the tropical western Pacific Ocean in the vicinity of a seamount	11
Drug repurposing: Antimicrobial and antibiofilm effects of penfluridol against Enterococcus faecalis	11
Optimization of nitrogen source supply for enhanced biosynthesis and quality of poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) by extremely halophilic archaeon Haloferax mediterranei	11
Global trends of Pseudomonas aeruginosa biofilm research in the past two decades: A bibliometric study	11
Deep tillage combined with biofertilizer following soil fumigation improved chrysanthemum growth by regulating the soil microbiome	11
Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor	11

Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii)	11
PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10	10
Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds	10
Metabolic potential of the moderate halophile Yangia sp. ND199 for co‐production of polyhydroxyalkanoates and exopolysaccharides	10
Bacterioplankton response to nitrogen and dissolved organic matter produced from salmon mucus	10
Characteristics of Planococcus antioxidans sp. nov., an antioxidant‐producing strain isolated from the desert soil in the Qinghai–Tibetan Plateau	10
Sporulation: A response to starvation in the fission yeast Schizosaccharomyces pombe	10
Multifunctional SEVA shuttle vectors for actinomycetes and Gram‐negative bacteria	10
Recombinant Limosilactobacillus (Lactobacillus) delivering nanobodies against Clostridium perfringens NetB and alpha toxin confers potential protection from necrotic enteritis	9
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formicaexsecta (Hymenoptera: Formicidae)	9
Pentaplex real‐time PCR for differential detection of Yersinia pestis and Y. pseudotuberculosis and application for testing fleas collected during plague epizootics	9
Microbial biominers: Sequential bioleaching and biouptake of metals from electronic scraps	9
Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India	9
Variations in gut bacterial communities between lesser white‐fronted geese wintering at Caizi and Shengjin lakes in China	9
Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acariformes: Syringophilidae)	9
Plants as a realized niche for Listeria monocytogenes	9
Machine learning modeling of the effects of media formulated with various yeast extracts on heterologous protein production in Escherichia coli	9
Comparative transcriptome and phenotype analysis revealed the role and mechanism of ompR in the virulence of fish pathogenic Aeromonas hydrophila	9
Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum	9
The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid	9
Application of a semi‐automatic, intensive follow‐up for improving efficacy and adherence of Helicobacter pylori eradication therapy: A randomized controlled trial	9
No man's land: Species‐specific formation of exclusion zones bordering Actinomyces graevenitzii microcolonies in nanoliter cultures	9
Phylum‐level diversity of the microbiome of the extremophilic basidiomycete fungus Pisolithus arhizus (Scop.) Rauschert: An island of biodiversity in a thermal soil desert	8
The in vitro antibacterial effect of permethrin and formaldehyde on Staphylococcus aureus	8
Long‐term stability of microbiome diversity and composition in fecal samples stored in eNAT medium	8
Direct detection of ESKAPEc pathogens from whole blood using the T2Bacteria Panel allows early antimicrobial stewardship intervention in patients with sepsis	8
Rapid analytical methods for the microalgal and cyanobacterial biorefinery: Application on strains of industrial importance	8
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum	8
A low‐cost pipeline for soil microbiome profiling	8
Small noncoding RNA sRNA0426 is involved in regulating biofilm formation in Streptococcus mutans	8
Characterization of promoters in archaeal genomes based on DNA structural parameters	8
In vivo and in silico screening for antimicrobial compounds from cyanobacteria	8
Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi	8
The effect of sulfamonomethoxine treatment on the gut microbiota of Nile tilapia (Oreochromis niloticus)	8
Prevalence and antimicrobial susceptibility of Salmonella in poultry farms and in‐contact humans in Adama and Modjo towns, Ethiopia	7
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens	7
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds	7
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf‐5	7
Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing	7
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study	7
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data	7
The c‐di‐AMP signaling system influences stress tolerance and biofilm formation of Streptococcus mitis	7
Regulation of cid and lrg expression by CodY in Streptococcus mutans	7
Niche partitioning of bacterial communities along the stratified water column in the Black Sea	7
Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings	7
Enriching captivity conditions with natural elements does not prevent the loss of wild‐like gut microbiota but shapes its compositional variation in two small mammals	7
Microbial diversity of garden snail mucus	7
Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection	7
The cytotoxic synergy between Clostridioides difficile toxin B and proinflammatory cytokines: an unholy alliance favoring the onset of Clostridioides difficile infection and relapses	7
The cell cycle of Staphylococcus aureus: An updated review	7
Composition, diversity, and activity of aerobic ammonia‐oxidizing Bacteria and Archaea in the intertidal sands of a grand strand South Carolina beach	7
DNA stable‐isotope probing reveals potential key players for microbial decomposition and degradation of diatom‐derived marine particulate matter	6
Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1	6
A membrane‐bound [NiFe]‐hydrogenase large subunit precursor whose C‐terminal extension is not essential for cofactor incorporation but guarantees optimal maturation	6
Deciphering Trifolium pratense L. holobiont reveals a microbiome resilient to future climate changes	6
Metabolic profiling analysis of the vitamin B12 producer Propionibacterium freudenreichii	6
DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotes	6
Phylogenetic analysis of Leuconostoc and Lactobacillus species isolated from sugarcane processing streams	6
Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments	6
Early biofilm and streamer formation is mediated by wall shear stress and surface wettability: A multifactorial microfluidic study	6
Reliability of stool microbiome methods for DNA yields and sequencing among infants and young children	6
Characterization of the microbiota and chemical properties of pork loins during dry aging	6
Discrimination of Escherichia coli, Shigella flexneri, and Shigella sonnei using lipid profiling by MALDI‐TOF mass spectrometry paired with machine learning	6
Coaggregation properties of trimeric autotransporter adhesins	6
Bacterial‐like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis	6
The effect of calcium palmitate on bacteria associated with infant gut microbiota	6
Development of a standardized Gram stain procedure for bacteria and inflammatory cells using an automated staining instrument	6
Diversity and specificity of the bacterial community in Chinese horse milk cheese	6
Isolation of two novel reassortant H3N6 avian influenza viruses from long‐distance migratory birds in Jiangxi Province, China	6
Patterns of protist distribution and diversification in alpine lakes across Europe	6
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study	6
Deciphering the role of host species for two Mycobacterium bovis genotypes from the European 3 clonal complex circulation within a cattle‐badger‐wild boar multihost system	5
Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice	5
Recombinant expression of an l‐amino acid oxidase from the fungus Hebeloma cylindrosporum in Pichia pastoris including fermentation	5
Highly efficient export of a disulfide‐bonded protein to the periplasm and medium by the Tat pathway using CyDisCo in Escherichia coli	5
The optimization system for preparation of TG1 competent cells and electrotransformation	5
Detection of Arcobacter species in different intestinal compartments of broiler chicken during slaughter and processing	5
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies	5
Nitrite as a causal factor for nitrate‐dependent anaerobic corrosion of metallic iron induced by Prolixibacter strains	5
Whole‐genome sequencing and genome‐scale metabolic modeling of Chromohalobacter canadensis 85B to explore its salt tolerance and biotechnological use	5

Diagnosis ofHelicobacter pyloriinfection in the elderly using an immunochromatographic assay‐based stool antigen test	5
Phylogeography of the marine pathogen, Vibrio vulnificus, revealed the ancestral scenarios of its evolution	5
Proteome profiling and vector yield optimization in a recombinant adeno‐associated virus‐producing yeast model	5
Molecular epidemiology of Candida tropicalis isolated from urogenital tract infections	5
Staphylococcus aureusST228 and ST239 as models for expression studies of diverse markers during osteoblast infection and persistence	5
Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples	5
Efficacy of Lactiplantibacillus plantarum 299 and 299v against nosocomial oropharyngeal pathogens in vitro and as an oral prophylactic treatment in a randomized, controlled clinical tria	5
Variation in the microbiota across different developmental stages of Aedes albopictus is affected by ampicillin exposure	5
Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism	5
Large and interacting effects of temperature and nutrient addition on stratified microbial ecosystems in a small, replicated, and liquid‐dominated Winogradsky column approach	5
Comparison of Actinobacteria communities from human‐impacted and pristine karst caves	5
Distinct microbiota assembly mechanisms revealed in different reconstruction stages during gut regeneration in the sea cucumber Apostichopus japonicus	5
Efficacy of antifungal agents against fungal spores: An in vitro study using microplate laser nephelometry and an artificially infected 3D skin model	5
ON‐rep‐seq as a rapid and cost‐effective alternative to whole‐genome sequencing for species‐level identification and strain‐level discrimination of Listeria monocytogenes contamination in a sal	5
Identification of a conserved N‐terminal domain in the first module of ACV synthetases	5
Improved fluorescent Listeria spp. biosensors for analysis of antimicrobials by flow cytometry	5
Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock	5
Attachment on mortar surfaces by cyanobacterium Gloeocapsa PCC 73106 and sequestration of CO2 by microbially induced calcium carbonate	5
Eating eggplants as a cucurbit feeder: Dietary shifts affect the gut microbiome of the melon fly Zeugodacus cucurbitae (Diptera, Tephritidae)	4
Distribution of microbiota across different intestinal tract segments of a stranded dwarf minke whale, Balaenoptera acutorostrata	4
Tunable population dynamics in a synthetic filamentous coculture	4
Gene expression responses to Zika virus infection in peripheral blood mononuclear cells from pregnant and non‐pregnant women	4
Analyses of locomotion, wing morphology, and microbiome in Drosophila nigrosparsa after recovery from antibiotics	4
Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging	4
Genomics of the “tumorigenes” clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov.	4
A parasitic nematode induces dysbiosis in susceptible but not resistant gastropod hosts	4
A comparative study of the fecal microbiota of gray seal pups and yearlings ‐ a marine mammal sentinel species	4
Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate	4
Antimicrobial resistance profiles of Escherichia coli and prevalence of extended‐spectrum beta‐lactamase‐producing Enterobacteriaceae in calves from organic and conventional dairy farms in Swit	4
Rhodobacter capsulatus AnfA is essential for production of Fe‐nitrogenase proteins but dispensable for cofactor biosynthesis and electron supply	4
De novo biosynthesis of α‐aminoadipate via multi‐strategy metabolic engineering in Escherichia coli	4
Evaluation of two xenobiotic reductases from Pseudomonas putida for their suitability for magnetic nanoparticle‐directed enzyme prodrug therapy as a novel approach to cancer treatment	4
A preliminary examination of the bacterial, archaeal, and fungal rhizosphere microbiome in healthy and Phellinus noxius‐infected trees	4
Individual Nudix hydrolases affect diverse features of Pseudomonas aeruginosa	4
Clp ATPases differentially affect natural competence development in Streptococcus mutans	4
Isolation of an antimicrobial‐resistant, biofilm‐forming, Klebsiella grimontii isolate from a reusable water bottle	4
Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor	4
Diversity and composition of the microbiome associated with eggs of the Southern green stinkbug, Nezara viridula (Hemiptera: Pentatomidae)	4
Identification of acetylated diether lipids in halophilic Archaea	4
Localization of the CotY and ExsY proteins to the exosporium basal layer of Bacillus anthracis	4
Identification and functional characterization of NAD(P)+‐dependent meso‐diaminopimelate dehydrogenase from Numidum massiliense	4
Evaluation of the occurrence of pathogenic free‐living amoeba and bacteria in 20 public indoor swimming pool facilities	4