OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biomedical Semantics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)

Article	Citations
Representing dental restoration materials in the oral health and disease ontology	50
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials	41
ClarID: a human-readable and compact identifier specification for biomedical metadata integration	27
Mapping between clinical and preclinical terminologies: eTRANSAFE’s Rosetta stone approach	25
Gene expression knowledge graph for patient representation and diabetes prediction	24
Semantic classification of Indonesian consumer health questions	22
Explanatory argumentation in natural language for correct and incorrect medical diagnoses	21
From narrative evidence to computable knowledge: a decision-relevant corpus for medicinal herb–disease relationships	15
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs	15
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern	14
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources	12
Features of a FAIR vocabulary	12
Semantically enabling clinical decision support recommendations	9
MedLexSp – a medical lexicon for Spanish medical natural language processing	9
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology	9
The CLEAR Principle: organizing data and metadata into semantically meaningful types of FAIR Digital Objects to increase their human explorability and cognitive interoperability	9
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection	9
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases	8
Semantics in action: a guide for representing clinical data elements with SNOMED CT	7
Development and validation of the early warning system scores ontology	7
Standardizing free-text data exemplified by two fields from the Immune Epitope Database	7
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis	7
Analysis and implementation of the DynDiff tool when comparing versions of ontology	6
Concretizing plan specifications as realizables within the OBO foundry	6
Towards reliable Spanish clinical text de-identification through comparative evaluation of language model approaches	6

Automatic transparency evaluation for open knowledge extraction systems