Journal of Biomedical Semantics

Papers
(The TQCC of Journal of Biomedical Semantics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-01-01 to 2025-01-01.)
ArticleCitations
Automatic transparency evaluation for open knowledge extraction systems33
Defining health data elements under the HL7 development framework for metadata management26
We are not ready yet: limitations of state-of-the-art disease named entity recognizers16
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences15
An ontology network for Diabetes Mellitus in Mexico15
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)14
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery12
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach12
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature11
Synthetic data for annotation and extraction of family history information from clinical text10
Concretizing plan specifications as realizables within the OBO foundry9
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials9
SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks8
Improved characterisation of clinical text through ontology-based vocabulary expansion8
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction7
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature7
IrGO: Iranian traditional medicine General Ontology and knowledge base6
Project Rosetta: a childhood social, emotional, and behavioral developmental feature mapping6
An annotated dataset for extracting gene-melanoma relations from scientific literature6
Improving reusability along the data life cycle: a regulatory circuits case study6
Explanatory argumentation in natural language for correct and incorrect medical diagnoses5
Chemical entity normalization for successful translational development of Alzheimer’s disease and dementia therapeutics5
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature4
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards4
Analysis and implementation of the DynDiff tool when comparing versions of ontology4
ResidueFinder: extracting individual residue mentions from protein literature4
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond4
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies4
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example4
Annotation of epilepsy clinic letters for natural language processing4
RecSOI: recommending research directions using statements of ignorance4
Impact of COVID-19 research: a study on predicting influential scholarly documents using machine learning and a domain-independent knowledge graph4
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