OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biomedical Semantics is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies	45
The Infectious Disease Ontology in the age of COVID-19	33
An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD)	28
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic	24
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data	16
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation	15
Multimodal temporal-clinical note network for mortality prediction	15
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences	14
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology	12
An ontology-based approach for developing a harmonised data-validation tool for European cancer registration	12
Pathling: analytics on FHIR	11
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach	10
Ontological representation, classification and data-driven computing of phenotypes	9
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature	9
Prefrontal fNIRS-based clinical data analysis of brain functions in individuals abusing different types of drugs	8
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond	8
IrGO: Iranian traditional medicine General Ontology and knowledge base	7
De-identifying Spanish medical texts - named entity recognition applied to radiology reports	7
BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine	6
Synthetic data for annotation and extraction of family history information from clinical text	6
Linking common human diseases to their phenotypes; development of a resource for human phenomics	6
We are not ready yet: limitations of state-of-the-art disease named entity recognizers	6
Improved characterisation of clinical text through ontology-based vocabulary expansion	6