OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Biomedical Semantics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-10-01 to 2025-10-01.)

Article	Citations
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction	45
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials	26
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature	21
Improving reusability along the data life cycle: a regulatory circuits case study	19
An annotated dataset for extracting gene-melanoma relations from scientific literature	18
Mapping between clinical and preclinical terminologies: eTRANSAFE’s Rosetta stone approach	18
Semantic classification of Indonesian consumer health questions	18
Gene expression knowledge graph for patient representation and diabetes prediction	17
Explanatory argumentation in natural language for correct and incorrect medical diagnoses	17
Features of a FAIR vocabulary	14
New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern	14
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs	13
MedLexSp – a medical lexicon for Spanish medical natural language processing	11
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection	11
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources	11
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis	8
Assessing resolvability, parsability, and consistency of RDF resources: a use case in rare diseases	8
Semantics in action: a guide for representing clinical data elements with SNOMED CT	8
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data	8
Residual refinement for interactive skin lesion segmentation	8
Semantically enabling clinical decision support recommendations	6
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology	6
Standardizing free-text data exemplified by two fields from the Immune Epitope Database	5
Defining health data elements under the HL7 development framework for metadata management	5
Automatic transparency evaluation for open knowledge extraction systems	5

Development and validation of the early warning system scores ontology