OOIR: Observatory of International Research

Papers

(The median citation count of Journal of Biomedical Semantics is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies	38
The Infectious Disease Ontology in the age of COVID-19	30
An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD)	27
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic	20
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences	12
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation	12
Multimodal temporal-clinical note network for mortality prediction	11
An ontology-based approach for developing a harmonised data-validation tool for European cancer registration	10
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data	10
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature	9
Prefrontal fNIRS-based clinical data analysis of brain functions in individuals abusing different types of drugs	8
Ontological representation, classification and data-driven computing of phenotypes	7
Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings	7
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond	7
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology	7
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach	7
Improved characterisation of clinical text through ontology-based vocabulary expansion	6
Linking common human diseases to their phenotypes; development of a resource for human phenomics	6
De-identifying Spanish medical texts - named entity recognition applied to radiology reports	6
Pathling: analytics on FHIR	6
CAS: corpus of clinical cases in French	6
DCSO: towards an ontology for machine-actionable data management plans	5
Identifying disease trajectories with predicate information from a knowledge graph	4
IrGO: Iranian traditional medicine General Ontology and knowledge base	4
BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine	4

Synthetic data for annotation and extraction of family history information from clinical text	4
Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology	4
Syntax-based transfer learning for the task of biomedical relation extraction	4
An ontology network for Diabetes Mellitus in Mexico	4
Exploiting document graphs for inter sentence relation extraction	3
An annotated corpus of clinical trial publications supporting schema-based relational information extraction	3
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature	3
Toward a systematic conflict resolution framework for ontologies	3
SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks	3
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature	3
The African wildlife ontology tutorial ontologies	3
Disclosing Main authors and Organisations collaborations in bioprinting through network maps analysis	3
Synthesizing evidence from clinical trials with dynamic interactive argument trees	2
SIENA: Semi-automatic semantic enhancement of datasets using concept recognition	2
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example	2
Improving reusability along the data life cycle: a regulatory circuits case study	2
Residual refinement for interactive skin lesion segmentation	2
De-identifying free text of Japanese electronic health records	2
Methodologically grounded semantic analysis of large volume of chilean medical literature data applied to the analysis of medical research funding efficiency in Chile	2
We are not ready yet: limitations of state-of-the-art disease named entity recognizers	2
MedLexSp – a medical lexicon for Spanish medical natural language processing	2
Neural side effect discovery from user credibility and experience-assessed online health discussions	2
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards	2
Defining health data elements under the HL7 development framework for metadata management	2