OOIR: Observatory of International Research

Papers

(The H4-Index of Computational and Structural Biotechnology Journal is 45. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer	431
UCell: Robust and scalable single-cell gene signature scoring	238
The DisGeNET cytoscape app: Exploring and visualizing disease genomics data	227
Integration strategies of multi-omics data for machine learning analysis	196
From pyroptosis, apoptosis and necroptosis to PANoptosis: A mechanistic compendium of programmed cell death pathways	187
The language of proteins: NLP, machine learning & protein sequences	177
Review on circular RNAs and new insights into their roles in cancer	173
The oralome and its dysbiosis: New insights into oral microbiome-host interactions	173
A review on machine learning approaches and trends in drug discovery	167
Chemokines and chemokine receptors during COVID-19 infection	145
Network analysis methods for studying microbial communities: A mini review	131
Automated methods for cell type annotation on scRNA-seq data	122
Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring	110
Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis	109
Nanopore sequencing and its application to the study of microbial communities	103
An overview of current COVID-19 vaccine platforms	97
Farnesoid X receptor (FXR): Structures and ligands	94
Prediction of HER2-positive breast cancer recurrence and metastasis risk from histopathological images and clinical information via multimodal deep learning	90
Association of risk factors with type 2 diabetes: A systematic review	83
A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data	80
The molecular feature of macrophages in tumor immune microenvironment of glioma patients	78
Recent advances in exploring the heavy metal(loid) resistant microbiome	69
Host transcriptomic profiling of COVID-19 patients with mild, moderate, and severe clinical outcomes	68
Machine learning and deep learning methods that use omics data for metastasis prediction	67
Dependence of SARS-CoV-2 infection on cholesterol-rich lipid raft and endosomal acidification	66

Statistical methods for Mendelian randomization in genome-wide association studies: A review	61
Machine learning in the prediction of cancer therapy	59
A review on marine plastisphere: biodiversity, formation, and role in degradation	59
On the road to explainable AI in drug-drug interactions prediction: A systematic review	59
Artificial intelligence in clinical care amidst COVID-19 pandemic: A systematic review	58
Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing	57
Accurate brain tumor detection using deep convolutional neural network	53
Phycobiliproteins: Structural aspects, functional characteristics, and biotechnological perspectives	53
Statistical and machine learning methods for spatially resolved transcriptomics with histology	52
A review on compound-protein interaction prediction methods: Data, format, representation and model	51
Integrated metabolomics and network pharmacology to reveal the mechanisms of hydroxysafflor yellow A against acute traumatic brain injury	51
Mechanistic insights into the effect of phosphorylation on Ras conformational dynamics and its interactions with cell signaling proteins	51
Skin microbiome transplantation and manipulation: Current state of the art	49
QuPath: The global impact of an open source digital pathology system	48
Applied machine learning in cancer research: A systematic review for patient diagnosis, classification and prognosis	47
The genus Bifidobacterium: from genomics to functionality of an important component of the mammalian gut microbiota	47
Immune evasion of SARS-CoV-2 from interferon antiviral system	47
Advances in the development of therapeutic strategies against COVID-19 and perspectives in the drug design for emerging SARS-CoV-2 variants	47
Defining the wheat microbiome: Towards microbiome-facilitated crop production	45
Stressed out: Bacterial response to high salinity using compatible solute biosynthesis and uptake systems, lessons from Vibrionaceae	45