OOIR: Observatory of International Research

Papers

(The H4-Index of Computational and Structural Biotechnology Journal is 43. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-06-01 to 2026-06-01.)

Article	Citations
Predicting cellular adaptation proteins dependent on eIF2α regulation under stress conditions: Physiological and pathophysiological implications in neuronal function	204
Corrigendum to “Maternal Clostridium butyricum supplementation during late gestation and lactation enhances gut bacterial communities, milk quality, and	185
Phylogenetic tree-based amino acid sequence generation for proteomics data analysis of unknown species	173
Gut microbiome enterotypes and temporal variations during a six-month inulin-supplemented weight loss randomized controlled trial in Thai children with obesity	147
macpie: Scalable workflow for high-throughput transcriptomic profiling	141
Radiomic clustering using graph network techniques coupled with unbalanced optimal transport	129
Altered heme metabolism and hemoglobin concentration due to empirical antibiotics-induced gut dysbiosis in preterm infants	110
DiabetesOmic: A comprehensive multi-omics diabetes database	108
Evolution is in the details: Regulatory differences in modern human and Neanderthal	105
Deep5mC: Predicting 5-methylcytosine (5mC) methylation status using a deep learning transformer approach	84
MMRT: MultiMut Recursive Tree for predicting functional effects of high-order protein variants from low-order variants	80
The influence of HIV sense and antisense transcripts on stochastic HIV transcription and reactivation	73
A miRNA signature linked to high lipoprotein (a) and coronary calcification in familial hypercholesterolaemia	73
Pseudotimecascade Visualizes Gene Expression Cascade in Pseudotime Analysis	73
Identification of a Novel Trifluoromethyl-Bearing Flavonoid as a Promising Androgen Receptor Antagonist: Structure-Based Virtual Screening and In Vitro Study	72
SnakeAltPromoter Facilitates Differential Alternative Promoter Analysis	71
Data pre-processing for analyzing microbiome data – A mini review	68
Ecological and Functional Stratification of the Stool Microbiome Predicts Response to Immune Checkpoint Inhibitors across Cancer Types	68
Predicting zeta potential of liposomes from their structure: A nano-QSPR model for DOPE, DC-Chol, DOTAP, and EPC formulations	63
VTAM: A robust pipeline for validating metabarcoding data using controls	61
The balance between photosynthesis and respiration explains the niche differentiation between Crocosphaera and Cyanothece	59
Integrated metabolomics and network analysis reveal changes in lipid metabolisms of tripterygium glycosides tablets in rats with collagen-induced arthritis	59
Consistencies and contradictions in different polymer models of chromatin architecture	58
In silico and in vitro approaches allow the identification of the Prosystemin molecular network	57
MUG: A mutation overview of GPCR subfamily A17 receptors	56

DIPAN: Detecting personalized intronic polyadenylation derived neoantigens from RNA sequencing data	56
cPEPmatch Webserver: A comprehensive tool and database to aid rational design of cyclic peptides for drug discovery	53
Identification and biophysical characterization of epitope atlas of Porcine Reproductive and Respiratory Syndrome Virus	53
Predictive dynamic control accurately maps the design space for 2,3-butanediol production	51
Free energy landscape of the PI3Kα C-terminal activation	51
WUREN: Whole-modal union representation for epitope prediction	50
Prediction of protein-ligand binding affinity with deep learning	49
Corrigendum to “Cryo-EM reveals architectural diversity in active rotavirus particles” [Comput. Struct. Biotechnol. J. 17 (2019) 1178–1183]	49
Ranking pre-trained speech embeddings in Parkinson's disease detection: Does Wav2Vec 2.0 outperform its 1.0 version across speech modes and languages?	49
Structural elucidation of four fungal hydrophobins belonging to classes I and II: Results from Alphafold and accelerated molecular dynamics simulations	49
EthnoHERBS: Harnessing traditional herbal knowledge for biodiversity conservation and innovative health solutions	48
CRUSADE project: Recycling technologies for ELV components to create a sustainable source of market grade materials for EU applications	48
From latent dynamics to data geometry: Nonlinear diffusion modelling for protein structures	46
CKATool: A clinical kinematic analysis toolbox for upper limb rehabilitation	45
Biomarker discovery process at binomial decision point (2BDP): Analytical pipeline to construct biomarker panel	44
Computation-aided studies related to the induction of specialized metabolite biosynthesis in microbial co-cultures: An introductory overview	44
Agreement and disagreement in pediatric functional neurological symptom disorders: Comparing patient reported outcome measures (PROMs) and clinician assessments	43
The second intracellular loop of the yeast Trk1 potassium transporter is involved in regulation of activity, and interaction with 14–3-3 proteins	43
Entropy-extreme model for predicting the development of cyber epidemics at early stages	43
A novel exosome-derived prognostic signature and risk stratification for breast cancer based on multi-omics and systematic biological heterogeneity	43
A drug repurposing method based on inhibition effect on gene regulatory network	43