OOIR: Observatory of International Research

Papers

(The median citation count of Cold Spring Harbor Perspectives in Biology is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Auxin Metabolism in Plants	106
Glycolysis	75
Liquid–Liquid Phase Separation in Chromatin	70
Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions	63
Carbohydrate Metabolism	52
The Mitochondrial Pathway of Apoptosis Part II: The BCL-2 Protein Family	52
Fourteen Stations of Auxin	46
Auxin Plays Multiple Roles during Plant–Pathogen Interactions	44
Transcription Factor Dynamics	37
A Stem Cell Approach to Cure Type 1 Diabetes	36
Auxin Transporters—A Biochemical View	34
Physical Nature of Chromatin in the Nucleus	34
Auxin and Flower Development: A Blossoming Field	33
The Mitochondrial Pathway of Apoptosis	32
Mitochondria	31
Nuclear Compartments: An Incomplete Primer to Nuclear Compartments, Bodies, and Genome Organization Relative to Nuclear Architecture	31
Mammalian DNA Replication Timing	31
Auxin Interactions with Other Hormones in Plant Development	30
Endoplasmic Reticulum–Associated Protein Degradation	30
Auxin-Regulated Lateral Root Organogenesis	30
No Time for Transcription—Rapid Auxin Responses in Plants	29
The Role of Myofibroblasts in Physiological and Pathological Tissue Repair	29
The Diverse Cellular Functions of Inner Nuclear Membrane Proteins	29
Building and Maintaining the Skin	28
Emerging Properties and Functions of Actin and Actin Filaments Inside the Nucleus	27

Mechanical Forces in Nuclear Organization	27
The Nuclear Lamina	25
Memory T-Cell Heterogeneity and Terminology	25
An Essential Function for Auxin in Embryo Development	24
The Death Receptor Pathway of Apoptosis	24
Amino Acid Metabolism	23
Regeneration, Rejuvenation, and Replacement: Turning Back the Clock on Tissue Aging	23
Niche Cells and Signals that Regulate Lung Alveolar Stem Cells In Vivo	23
Epigenetic Reprogramming in Early Animal Development	23
Caspases and Their Substrates	23
Lipid Metabolism	22
The Story of Auxin-Binding Protein 1 (ABP1)	22
Polyploidy in Tissue Repair and Regeneration	22
Insect Gut Regeneration	22
NADPH—The Forgotten Reducing Equivalent	21
The Nuclear Pore Complex as a Transcription Regulator	21
Uncovering How Auxin Optimizes Root Systems Architecture in Response to Environmental Stresses	19
Cellular, Metabolic, and Developmental Dimensions of Whole-Body Regeneration in Hydra	19
Structural Aspects of Auxin Signaling	19
Auxin in Root Development	18
Essential Roles for RNA in Shaping Nuclear Organization	18
Comparative Biology of Vertebrate Retinal Regeneration: Restoration of Vision through Cellular Reprogramming	18
Caspase Activation and Inhibition	18
Sex Differences in Circadian Rhythms	17
Growth Factor and Cytokine Delivery Systems for Wound Healing	17
The Stochastic Genome and Its Role in Gene Expression	17
ER-Phagy: Quality and Quantity Control of the Endoplasmic Reticulum by Autophagy	17
Homeostasis of Naive and Memory T Lymphocytes	17
Structure and Function of the Nuclear Pore Complex	16
Nucleotide Metabolism	16
The Molecular and Nuclear Dynamics of X-Chromosome Inactivation	15
Structural Diversity within the Endoplasmic Reticulum—From the Microscale to the Nanoscale	15
Of Cells, Strands, and Networks: Auxin and the Patterned Formation of the Vascular System	15
Role of Macrophages in Wound Healing	14
Auxin Does the SAMba: Auxin Signaling in the Shoot Apical Meristem	14
Computational Models of Auxin-Driven Patterning in Shoots	13
Positional Information and Stem Cells Combine to Result in Planarian Regeneration	13
Pervasive Neglect of Sex Differences in Biomedical Research	13
Angiogenesis in Wound Repair: Too Much of a Good Thing?	13
Organization of the Pluripotent Genome	12
Area under Immunosurveillance: Dedicated Roles of Memory CD8 T-Cell Subsets	12
CD4⁺ Memory T-Cell Formation during Type 1 Immune Responses	12
Chemical Biology in Auxin Research	12
Sex Differences in Major Depressive Disorder (MDD) and Preclinical Animal Models for the Study of Depression	12
Structure, Maintenance, and Regulation of Nuclear Pore Complexes: The Gatekeepers of the Eukaryotic Genome	12
Signaling and Metabolism	12
Uncovering the Principles of Genome Folding by 3D Chromatin Modeling	11
Temporal and Epigenetic Control of Plasticity and Fate Decision during CD8⁺T-Cell Memory Differentiation	11
Long-Lived Skin-Resident Memory T Cells Contribute to Concomitant Immunity in Cutaneous Leishmaniasis	11
3D or Not 3D: Shaping the Genome during Development	11

Endoplasmic Reticulum Membrane Contact Sites, Lipid Transport, and Neurodegeneration	11
Regulation and Functions of the ER-Associated Nrf1 Transcription Factor	11
Positional Memory in Vertebrate Regeneration: A Century's Insights from the Salamander Limb	10
Formation of Tissue-Resident CD8⁺ T-Cell Memory	10
Metabolism of Proliferating Cells	10
Plasticity of Epithelial Cells during Skin Wound Healing	10
The Impact of Space and Time on the Functional Output of the Genome	10
Glycerolipid Synthesis and Lipid Droplet Formation in the Endoplasmic Reticulum	10
Good Neighbors: The Niche that Fine Tunes Mammalian Intestinal Regeneration	10
Influenza-Specific Lung-Resident Memory CD8⁺T Cells	10
The Biogenesis of Multipass Membrane Proteins	9
Endoplasmic Reticulum Architecture and Inter-Organelle Communication in Metabolic Health and Disease	9
Imaging Organization of RNA Processing within the Nucleus	9
Viruses in the Nucleus	9
Mechanism of Protein Translocation by the Sec61 Translocon Complex	9
Noncanonical Auxin Signaling	9
Cholesterol Transport to the Endoplasmic Reticulum	9
Mesenchymal Stem Cell–Derived Extracellular Vesicles as an Advanced Therapy for Chronic Wounds	9
Chromatin Mechanisms Driving Cancer	9
Bioelectric Signaling: Role of Bioelectricity in Directional Cell Migration in Wound Healing	9
Somatic Lineage Reprogramming	8
Mammalian Digit Tip Regeneration: Moving from Phenomenon to Molecular Mechanism	8
Sex Differences in Acute Neuroendocrine Responses to Stressors in Rodents and Humans	8
Decoding Tissue-Residency: Programming and Potential of Frontline Memory T Cells	8
A TAle of Two Pathways: Tail-Anchored Protein Insertion at the Endoplasmic Reticulum	8
Durable CD4 T-Cell Memory Generation Depends on Persistence of High Levels of Infection at an Effector Checkpoint that Determines Multiple Fates	8
Sex Differences in Spotted Hyenas	8
The Naming of Memory T-Cell Subsets	8
Beyond the Code: Noncoding RNAs in Skin Wound Healing	8
All for One and One for All: Regenerating Skeletal Muscle	8
Axon Regeneration: A Subcellular Extension in Multiple Dimensions	8
On the Evolutionary Origins of Land Plant Auxin Biology	8
A History of Cancer Research: Tumor Viruses	7
The Impact of Chromosomal Rearrangements in Speciation: From Micro- to Macroevolution	7
Auxin Biology in Bryophyta: A Simple Platform with Versatile Functions	7
Lung Regeneration: Cells, Models, and Mechanisms	7
Modeling Auxin Signaling in Roots: Auxin Computations	7
Diversity of Fibroblasts and Their Roles in Wound Healing	7
Molecular Pathophysiology of Chronic Wounds: Current State and Future Directions	7
Sorting and Export of Proteins at the Endoplasmic Reticulum	7
Fibroblast Heterogeneity in Healthy and Wounded Skin	7
A Synthesis Concerning Conservation and Divergence of Cell Types across Epithelia	6
CD8⁺T-Cell Memory: The Why, the When, and the How	6
Evolving Views of Long Noncoding RNAs and Epigenomic Control of Lymphocyte State and Memory	6
Divergence of Tissue-Memory T Cells: Distribution and Function-Based Classification	6
AMPylation and Endoplasmic Reticulum Protein Folding Homeostasis	6
The Wound Microbiome	6
Cell Death and Cancer	6
Post-Translational Regulation of HMG CoA Reductase	6
Cellular Senescence in Acute and Chronic Wound Repair	6
Epithelial–Mesenchymal Plasticity and Endothelial–Mesenchymal Transition in Cutaneous Wound Healing	6
Auxin–Environment Integration in Growth Responses to Forage for Resources	6