Plant Genome

Papers
(The TQCC of Plant Genome is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-03-01 to 2025-03-01.)
ArticleCitations
Novel stripe rust all‐stage resistance loci identified in a worldwide collection of durum wheat using genome‐wide association mapping117
Genomic prediction of seed nutritional traits in biparental families of oat (Avena sativa)62
Integrating de novo QTL‐seq and linkage mapping to identify quantitative trait loci conditioning physiological resistance and avoidance to white mold disease in dry bean61
Genomic prediction for the Germplasm Enhancement of Maize project60
Identifying and expression analysis of WD40 transcription factors in walnut41
Research Highlights, The Plant Genome, Volume 15, Issue 439
Thanks to Reviewers, The Plant Genome, 202237
Genetic mapping of sorghum resistance to an Illinois isolate of Colletotrichum sublineola32
Issue Information28
Combining genome‐wide association and genomic prediction to unravel the genetic architecture of carotenoid accumulation in carrot26
DECUSSATEnetwork with flowering genes explains the variable effects ofqDTY12.1to rice yield under drought across genetic backgrounds24
Shaping the biology of citrus: II. Genomic determinants of domestication24
Assessment of potential candidate genes for partial resistance to Sclerotinia stem rot caused by Sclerotinia sclerotiorum using real‐time quantitative PCR24
Maintenance of UK bread baking quality: Trends in wheat quality traits over 50 years of breeding and potential for future application of genomic‐assisted selection23
The soybean ubiquitin‐proteasome system: Current knowledge and future perspective23
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Characterization of evolutionarily distinct rice BAHD‐Acyltransferases provides insight into their plausible role in rice susceptibility to Rhizoctonia solani20
Detection of rare nematode resistance Rhg1 haplotypes in Glycine soja and a novel Rhg1 α‐SNAP20
Cover Image, Volume 14, Issue 220
The effects of crop attributes, selection, and recombination on Canadian bread wheat molecular variation20
Long noncoding RNA transcriptome analysis reveals novel lncRNAs in Morus alba ‘Yu‐711’ response to drought stress19
Research highlights, The Plant Genome, Volume 16, Issue 318
Transcriptome analysis of iron over‐accumulating Arabidopsis genotypes uncover putative novel regulators of systemic and retrograde signaling18
Evolutionary fates of gene‐body methylation and its divergent association with gene expression in pigeonpea17
Genomic prediction of synthetic hexaploid wheat upon tetraploid durum and diploid Aegilops parental pools16
An extensible vector toolkit and parts library for advanced engineering of plant genomes16
Understanding genome structure facilitates the use of wild lentil germplasm for breeding: A case study with shattering loci16
Approaches and progress in breeding drought‐tolerant maize hybrids for tropical lowlands in west and central Africa16
Integrated multi‐omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.)16
Introducing CHiDO—A No Code Genomic Prediction software implementation for the characterization and integration of driven omics15
Molecular markers enhance substantially the distinctness of alfalfa varieties for registration and protection15
Genome‐wide association study for lignocellulosic compounds and fermentable sugar in rice straw15
Genetic architecture of protein and oil content in soybean seed and meal15
Editorial Board15
Differentially expressed microRNAs that target functional genes in mature soybean nodules15
Antimicrobial peptides in Dendrobium officinale: Genomic parameters, peptide structures, and gene expression patterns14
RNA‐seq bulked segregant analysis combined with KASP genotyping rapidly identified PmCH7087 as responsible for powdery mildew resistance in wheat14
Genome‐wide association analysis for response of Senegalese sorghum accessions to Texas isolates of anthracnose14
Genomic selection strategies to increase genetic gain in tea breeding programs14
Transgressive resistance to Heterodera glycines in chromosome segment substitution lines derived from susceptible soybean parents14
Diversity and determinants of bitterness, astringency, and fat content in cultivated Nacional and native Amazonian cocoa accessions from Ecuador14
Genomic and phenotypic characterization of finger millet indicates a complex diversification history13
Genetic dissection of domestication traits in interspecific chickpea populations13
Genomic selection optimization in blueberry: Data‐driven methods for marker and training population design13
High‐resolution mapping of Yr78, an adult plant resistance gene to wheat stripe rust13
Chromosome‐scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication13
Genome‐wide association analysis identified consistent QTL for seed yield in a soybean diversity panel tested across multiple environments13
Evolutionary computing to assemble standing genetic diversity and achieve long‐term genetic gain13
Genomic‐wide analysis reveals seven in absentia genes regulating grain development in wheat (Triticum aestivum L.)13
Training set design in genomic prediction with multiple biparental families13
Consensus genomic regions for grain quality traits in wheat revealed by Meta‐QTL analysis and in silico transcriptome integration13
The ancestral karyotype of the Heliantheae Alliance, herbicide resistance, and human allergens: Insights from the genomes of common and giant ragweed13
Genome‐wide identification of bZIP transcription factors in 12 Rosaceae species and modeling of novel mechanisms of EjbZIPs response to salt stress13
Genetic and phenotypic characterization of rice grain quality traits to define research strategies for improving rice milling, appearance, and cooking qualities in Latin America and the Caribbean13
Application of a Poisson deep neural network model for the prediction of count data in genome‐based prediction12
Development of whole‐genome prediction models to increase the rate of genetic gain in intermediate wheatgrass (Thinopyrum intermedium) breeding12
A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis12
Chromosome‐specific KASP markers for detecting Amblyopyrum muticum segments in wheat introgression lines12
Benchmarking Oxford Nanopore read alignment‐based insertion and deletion detection in crop plant genomes12
Genomic prediction modeling of soybean biomass using UAV‐based remote sensing and longitudinal model parameters12
Optimal implementation of genomic selection in clone breeding programs—Exemplified in potato: I. Effect of selection strategy, implementation stage, and selection intensity on short‐term genetic gain12
Branch angle and leaflet shape are associated with canopy coverage in soybean12
The trans‐kingdom communication of noncoding RNAs in plant–environment interactions12
The pangenome of banana highlights differences between genera and genomes12
Comparing gradient boosting machine and Bayesian threshold BLUP for genome‐based prediction of categorical traits in wheat breeding11
Development and evaluation of Fusarium wilt‐resistant and high‐yielding chickpea advanced breeding line, KCD 1111
Genome‐wide association of dry (Tamar) date palm fruit color11
Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding11
Increasing the level of resistant starch in ‘Presidio’ rice through multiplex CRISPR–Cas9 gene editing of starch branching enzyme genes11
Using cross‐country datasets for association mapping in Arachis hypogaea L.11
Cover Image, Volume 14, Issue 311
Genetic control of root architectural traits under drought stress in spring barley (Hordeum vulgare L.)11
Complete genome sequence and phylogenetic analysis of medicinal plant Abrus cantoniensis for evolutionary research and germplasm utilization11
Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks11
Use of continuous genotypes for genomic prediction in sugarcane10
Relative importance of genotype, gene expression, and DNA methylation on complex traits in perennial ryegrass10
A chromosome‐scale reference of Chenopodium watsonii helps elucidate relationships within the North American A‐genome Chenopodium species and with quinoa10
Salt stress responses and SNP‐based phylogenetic analysis of Thai rice cultivars10
Genome‐wide association mapping for field spot blotch resistance in South Asian spring wheat genotypes10
Combination of meta‐analysis of QTL and GWAS to uncover the genetic architecture of seed yield and seed yield components in common bean10
The Plant Genome special section: Grain quality and nutritional genomics for breeding next‐generation crops10
Globally deployed sorghum aphid resistance gene RMES1 is vulnerable to biotype shifts but is bolstered by RMES210
Use of genomic prediction to screen sorghum B‐lines in hybrid testcrosses10
Comparing artificial‐intelligence techniques with state‐of‐the‐art parametric prediction models for predicting soybean traits10
Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multienvironment trials10
Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans10
Exploring the genomics of abiotic stress tolerance and crop resilience to climate change10
Genetic dissection of seed characteristics in field pennycress via genome‐wide association mapping studies10
Maize and heat stress: Physiological, genetic, and molecular insights9
Genetic basis for lentil adaptation to summer cropping in northern temperate environments9
Unravelling consensus genomic regions conferring leaf rust resistance in wheat via meta‐QTL analysis9
The application of pangenomics and machine learning in genomic selection in plants9
Alfalfa genomic selection for different stress‐prone growing regions9
The MLO1 powdery mildew susceptibility gene in Lathyrus species: The power of high‐density linkage maps in comparative mapping and synteny analysis9
Environmental factors have a major effect in shaping the gene expression of Siberian larch in the Altai Mountains of China9
Multi‐trait genomic selection can increase selection accuracy for deoxynivalenol accumulation resulting from fusarium head blight in wheat9
Exploring the role of FAT genes in Solanaceae species through genome‐wide analysis and genome editing9
Grass pea natural variation reveals oligogenic resistance to Fusarium oxysporum f. sp. pisi9
Genome‐enabled prediction for sparse testing in multi‐environmental wheat trials9
Deep‐learning power and perspectives for genomic selection9
Identification and expression analysis of heat‐shock proteins in wheat infected with powdery mildew and stripe rust8
Genome‐wide association study of carotenoids in maize kernel8
Subsampling and DNA pooling can increase gains through genomic selection in switchgrass8
An organ‐specific transcriptomic atlas of the medicinal plant Bletilla striata: Protein‐coding genes, microRNAs, and regulatory networks8
Identification and characterization of a novel QTL for barley yellow mosaic disease resistance from bulbous barley8
Recipients of 2021 CSSA Editor's Citation for Excellence Named8
A medium‐density genotyping platform for cultivated strawberry using DArTag technology8
Genome‐wide analysis of HD‐Zip genes in Sophora alopecuroides and their role in salt stress response8
TPG 2021 Publisher's Report8
SimpleMating: R‐package for prediction and optimization of breeding crosses using genomic selection8
Issue Information8
Research highlights, The Plant Genome, Volume 16, Issue 28
Developing drought‐smart, ready‐to‐grow future crops8
Transcriptomic and epigenetic responses shed light on soybean resistance to Phytophthora sansomeana8
Proteomic analysis of near‐isogenic lines reveals key biomarkers on wheat chromosome 4B conferring drought tolerance8
Mapping resistance to Sclerotinia white mold in two pinto bean recombinant inbred line populations8
Mapping of seed quality traits in the C genome of Brassica napus by using a population carrying genome content of B. oleracea and their effect on other traits8
Critical roles of the activation of ethylene pathway genes mediated by DNA demethylation in Arabidopsis hyperhydricity7
Exploiting historical agronomic data to develop genomic prediction strategies for early clonal selection in the Louisiana sugarcane variety development program7
Genomic variation within the maize stiff‐stalk heterotic germplasm pool7
Genome‐wide association study for yield and quality of granulated cassava processed product7
Editorial Board7
Characterization of a new Lr52 allele for leaf rust resistance in the Iranian wheat landrace PI 6221117
Pitfalls of multi‐species SNP arrays introducing new forms of ascertainment bias7
Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating7
Thanks to Reviewers, The Plant Genome, 20237
Leveraging spatiotemporal genomic breeding value estimates of dry matter yield and herbage quality in ryegrass via random regression models7
Rapid analysis of hydrogen cyanide in fresh cassava roots using NIRSand machine learning algorithms: Meeting end user demand for low cyanogenic cassava7
Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing7
Transcript profiling of hairy vetch (Vicia villosaRoth) identified interesting genes for seed dormancy7
The Plant Genomespecial issue: Advances in genomic selection and application of machine learning in genomic prediction for crop improvement7
Transcriptome‐wide expression landscape and starch synthesis pathway co‐expression network in sorghum7
Genome assembly and multi‐omic analyses reveal the mechanisms underlying flower color formation in Torenia fournieri7
Integration of machine learning and genome‐wide association study to explore the genomic prediction accuracy of agronomic trait in oats (Avena sativa L.)7
Exploring the genetic basis of resistance to Neopestalotiopsis species in strawberry7
Time‐series multispectral imaging in soybean for improving biomass and genomic prediction accuracy7
Characterization of the genetic basis of local adaptation of wheat landraces from Iran and Pakistan using genome‐wide association study7
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