Cell Host & Microbe

Papers
(The TQCC of Cell Host & Microbe is 33. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
Viral mimicry protects from infection when you’re expecting486
Breathe and bloom: Gut hypoxia limits C. albicans growth479
Functional map of SARS-CoV-2 3CL protease reveals tolerant and immutable sites475
Secretory IgA: Linking microbes, maternal health, and infant health through human milk410
The dominoes fall after long-term antibiotic exposure316
Accelerating mammalian filovirus research with receptor binding blueprints294
MFSD6 is an entry receptor for respiratory enterovirus D68292
Fiber- and acetate-mediated modulation of MHC-II expression on intestinal epithelium protects from Clostridioides difficile infection279
Sowing the seeds of infection253
Virus hunters: Discovering the evolutionary origins of SARS-CoV-2249
Direct comparison of antibody responses to four SARS-CoV-2 vaccines in Mongolia236
Selenium nanoboosting of plant-beneficial microbiome219
Multi-omics signatures reveal genomic and functional heterogeneity of Cutibacterium acnes in normal and diseased skin211
Enhanced neutralization resistance of SARS-CoV-2 Omicron subvariants BQ.1, BQ.1.1, BA.4.6, BF.7, and BA.2.75.2203
A secondary metabolite drives intraspecies antagonism in a gut symbiont that is inhibited by cell-wall acetylation187
Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans174
Norovirus cell tropism: The road to uncovering its secret hideout173
Commensals make the most of their hosts171
Trick and no treat: Carbohydrate preemption by commensal Enterobacteriaceae170
Neutrophils flash their GLUTs to beat back detestable fungi169
Even old foes can learn sweet new tricks162
Salmonella “RecAmends” self-healing156
Find a little help from my (microbial) friends153
Holding back: HLA-associated inhibition of NK cells gives HIV a leg up148
The devil in the details: Herd immunity and pandemic response143
From parent to progeny142
A single-nucleotide polymorphism in Helicobacter pylori promotes gastric cancer development141
From poo to promise: Fecal microbiota transplants support immunotherapy re-sensitization in solid tumors139
Microbial byproducts determine reproductive fitness of free-living and parasitic nematodes137
The gut-brain axis goes viral135
The quest for control133
Divide and conquer: Spatiotemporal plant innate immunity at single-cell resolution130
Ecological diversity profiles of non-vaccine-targeted HPVs after gender-based community vaccination efforts129
Salmonella-liberated dietary L-arabinose promotes expansion in superspreaders128
Linking E. coli to fibrosis in Crohn’s disease123
Commensal fungi, a force to be reckoned with122
Engineered bacteria recycle tumor metabolic waste to boost immunotherapy118
Anti-V1/V3-glycan broadly HIV-1 neutralizing antibodies in a post-treatment controller117
Fighting the invisible foe in cancer therapy117
Walking down the phosphorylation path to root immunity116
Mommy’s microbes: Gestational diabetes mellitus shapes the maternal and infant gut microbiome116
Type I IFN-mediated NET release promotes Mycobacterium tuberculosis replication and is associated with granuloma caseation116
Robust SARS-CoV-2 infection in nasal turbinates after treatment with systemic neutralizing antibodies116
Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants115
Fungi make fun guys113
Bacteroides acidifaciens drives a liver detox program112
mRNA vaccines: A promising platform for safer, more effective next-generation Orthopoxvirus immunization111
INDELible impact: How structural variants drive virulence and resistance110
Pangenomes of human gut microbiota uncover links between genetic diversity and stress response110
A large-scale type I CBASS antiphage screen identifies the phage prohead protease as a key determinant of immune activation and evasion109
Host cells subdivide nutrient niches into discrete biogeographical microhabitats for gut microbes108
MAMPs: A devil tamed becomes an angel108
The Toxoplasma effector GRA28 promotes parasite dissemination by inducing dendritic cell-like migratory properties in infected macrophages106
Going viral: The role of mobile genetic elements in bacterial immunity106
Stealth strategies of Candida albicans to evade host immunity103
SARS-CoV-2 Omicron sublineages show comparable cell entry but differential neutralization by therapeutic antibodies103
Rapid design of bacteriophage cocktails to suppress the burden and virulence of gut-resident carbapenem-resistant Klebsiella pneumoniae103
Microbiome modification for personalized treatment of dysbiotic diseases102
Combatting superbugs using the evolutionary record of microbial warfare102
A prophage competition element protects Salmonella from lysis101
Candida lipase packs a punch against IL-1796
Comprehensive analysis of Mycobacterium tuberculosis genomes reveals genetic variations in bacterial virulence96
Detect and destroy: CRISPR-based technologies for the response against viruses95
Candidalysin: An unlikely aide for fungal gut commensalism94
Assessing phage-host population dynamics by reintroducing virulent viruses to synthetic microbiomes94
Microbial genome mining expedition unearths trove of antiviral defenses90
Identification of host regulators of Mycobacterium tuberculosis phenotypes uncovers a role for the MMGT1-GPR156 lipid droplet axis in persistence89
Fecal matters: Microbial signatures distinguish clinically relevant subtypes of precancerous colorectal polyps89
Homotypic antibodies target novel E glycoprotein domains after natural DENV 3 infection/vaccination87
Growing up: A NOD2 our microbes87
Potent cross-neutralization of respiratory syncytial virus and human metapneumovirus through a structurally conserved antibody recognition mode87
Mycobacterial phage TM4 requires a eukaryotic-like Ser/Thr protein kinase to silence and escape anti-phage immunity86
Rethinking phage-bacteria-eukaryotic relationships and their influence on human health86
Human cytomegalovirus degrades DMXL1 to inhibit autophagy, lysosomal acidification, and viral assembly86
Stress-induced condensate switch awakens sleeping viruses85
Innate immune sensing of rotavirus by intestinal epithelial cells leads to diarrhea84
It takes three: A cocktail of protists, bacterial sphingolipids and an inflammasome84
Boosting endosymbiosis in plants for future self-sustained crop production84
Susceptible bacteria can survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance83
Microbiota metabolism of intestinal amino acids impacts host nutrient homeostasis and physiology83
The blue-light receptor CRY1 serves as a switch to balance photosynthesis and plant defense82
Gut commensals expand vitamin A metabolic capacity of the mammalian host81
Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice80
Pre-existing humoral immunity to human common cold coronaviruses negatively impacts the protective SARS-CoV-2 antibody response80
Evolutionarily conserved bacterial effectors hijack abscisic acid signaling to induce an aqueous environment in the apoplast79
Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria78
Mechanism of phage sensing and restriction by toxin-antitoxin-chaperone systems78
Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-1978
Generation of host-directed and virus-specific antivirals using targeted protein degradation promoted by small molecules and viral RNA mimics75
Signatures of antagonistic pleiotropy in a bacterial flagellin epitope74
Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year73
Worming into infancy: Exploring helminth-microbiome interactions in early life73
Host stress drives tolerance and persistence: The bane of anti-microbial therapeutics73
Argonaute-CLIP delineates versatile, functional RNAi networks in Aedes aegypti, a major vector of human viruses72
Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway72
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution72
Epithelial hypoxia maintains colonization resistance against Candida albicans72
Airway dysbiosis accelerates lung function decline in chronic obstructive pulmonary disease71
Salmonella Typhimurium expansion in the inflamed murine gut is dependent on aspartate derived from ROS-mediated microbiota lysis71
A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants71
Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome71
A human commensal-pathogenic fungus suppresses host immunity via targeting TBK170
RNAi, a sword of plant seeds to combat viral infections70
Trained immunity: Target for prophylaxis and therapy70
Precision microbial intervention improves social behavior but not autism severity: A pilot double-blind randomized placebo-controlled trial69
Fiber-deficient diets reprogram the microbiota68
Structural insights into viral RNA capping and plasma membrane targeting by Chikungunya virus nonstructural protein 167
Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities66
A short prokaryotic Argonaute activates membrane effector to confer antiviral defense66
Prophages encode phage-defense systems with cognate self-immunity66
Phages and their satellites encode hotspots of antiviral systems66
Opposing diet, microbiome, and metabolite mechanisms regulate inflammatory bowel disease in a genetically susceptible host65
An expanded arsenal of immune systems that protect bacteria from phages65
High-fat diet disrupts REG3γ and gut microbial rhythms promoting metabolic dysfunction64
A Gpr35-tuned gut microbe-brain metabolic axis regulates depressive-like behavior63
Early life host-microbe interactions in skin63
Longitudinal comparison of the developing gut virome in infants and their mothers63
Multi-armed antibiotics for Gram-positive bacteria63
A complex immune response to flagellin epitope variation in commensal communities61
Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria61
Interaction between Staphylococcus Agr virulence and neutrophils regulates pathogen expansion in the skin61
Commensal microbiota regulates skin barrier function and repair via signaling through the aryl hydrocarbon receptor61
Characterization of gut microbial structural variations as determinants of human bile acid metabolism60
Proteobacteria impair anti-tumor immunity in the omentum by consuming arginine60
Enteric VIP-producing neurons maintain gut microbiota homeostasis through regulating epithelium fucosylation60
Colonization of the live biotherapeutic product VE303 and modulation of the microbiota and metabolites in healthy volunteers59
Mycobacterium tuberculosis suppresses host DNA repair to boost its intracellular survival59
A necrotizing toxin enables Pseudomonas syringae infection across evolutionarily divergent plants59
A dissemination-prone morphotype enhances extrapulmonary organ entry by Cryptococcus neoformans59
SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-1958
Anatomy promotes neutral coexistence of strains in the human skin microbiome58
Gut commensal E. coli outer membrane proteins activate the host food digestive system through neural-immune communication58
Increased resistance of SARS-CoV-2 variant P.1 to antibody neutralization58
Developmental trajectory of the healthy human gut microbiota during the first 5 years of life57
Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota57
The bacterial effector GarD shields Chlamydia trachomatis inclusions from RNF213-mediated ubiquitylation and destruction57
Acetylation of the NS3 helicase by KAT5γ is essential for flavivirus replication56
An atlas of continuous adaptive evolution in endemic human viruses56
Guilds as guides for health vs. disease55
Duffy antigen is expressed during erythropoiesis in Duffy-negative individuals54
A selfish bacteriocin dictates pneumococcal domination52
tHIS way to cognitive development52
Plant growth promotion through repression of defenses by leaf microbiota52
Antibiotic treatment ignites a fire that lasts51
The evolutionary potential of influenza A virus hemagglutinin is highly constrained by epistatic interactions with neuraminidase51
Symbionts of predatory protists are widespread in the oceans and related to animal pathogens51
Skin-deep immune sensing50
A colon cancer “prequel”50
Decoding the blueprint of receptor binding by filoviruses through large-scale binding assays and machine learning50
Antibacterial action, proteolytic immunity, and in vivo activity of a Vibrio cholerae microcin48
Road to the discovery of HO-2’s myristate binding activity48
Antiviral RNA interference inhibits virus vertical transmission in plants48
Beta-carbolines suppress vaginal inflammation47
Two-for-one: Dual host-microbe functions of S. epidermidis Sph47
Robbing the thief47
Hair of the mouse: A skin bacteria “cocktail” gets follicles back on their feet46
SnapShot: The Expobiome Map45
A gB nanoparticle vaccine elicits a protective neutralizing antibody response against EBV45
Cad1 turns ATP into phage poison45
Subtle, persistent shaping of the gut microbiome by host genes: A critical determinant of host biology44
Helminths are positively AMPing up gut de-bugging44
Help from commensals: β-hex to regulate gut immunity44
Diet leaves a genetic signature in a keystone member of the gut microbiota44
Bugs take the sting out43
Candida albicans accelerates atherosclerosis by activating intestinal hypoxia-inducible factor2α signaling43
Protection against Clostridioides difficile disease by a naturally avirulent strain43
Lymph node dendritic cells harbor inducible replication-competent HIV despite years of suppressive ART42
The butterfly effect of the strain richness influences the efficacy of microbiota transplantation42
A layered effect in bacterial defense42
Gut microbiome and bladder cancer: A new link through nitrosamine metabolism41
Characterization of the rotavirus assembly pathway in situ using cryoelectron tomography40
Human influenza virus challenge identifies cellular correlates of protection for oral vaccination40
From top to bottom: Staphylococci in atopic dermatitis40
Lessons learned by an organic chemist entering the microbiome field40
Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning40
Fatty liver? Microbiome sphingolipids to the rescue40
Regulators of male and female sexual development are critical for the transmission of a malaria parasite40
There and back again: Discovering antiviral and antiphage defenses using deep homology39
Fungal influence: The role of the gut mycobiome in women’s health39
Immunity to fungi and vaccine considerations39
Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants39
Intestinal newborn regulatory B cell antibodies modulate microbiota communities38
The bad neighbor: Prophage competition in Salmonella during macrophage infection38
A metagenome-assembled genome inventory for children reveals early-life gut bacteriome and virome dynamics38
Streptomyces use umbrella toxins to gently compete with kin38
Beyond neutralization for BNT162b2 mRNA vaccination38
A trivalent mucosal vaccine encoding phylogenetically inferred ancestral RBD sequences confers pan-Sarbecovirus protection in mice38
Quorum sensing-activated phenylalanine metabolism drives OMV biogenesis to enhance mosquito commensal colonization resistance to Plasmodium37
The SMC5/6 complex compacts and silences unintegrated HIV-1 DNA and is antagonized by Vpr37
The complete Kaposi sarcoma-associated herpesvirus genome induces early-onset, metastatic angiosarcoma in transgenic mice37
Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America36
Partial protection against P. vivax infection diminishes hypnozoite burden and blood-stage relapses36
Diarrheal pathogens trigger rapid evolution of the guanylate cyclase-C signaling axis in bats36
Fusobacterium nucleatum subsp. animalis comes to the spotlight in oral diseases36
An aberrant inflammatory response in severe COVID-1936
Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine36
Stoking inflammasome fires in the COVID-19 neighborhood35
Prenatal antibiotics reduce breast milk IgA and induce dysbiosis in mouse offspring, increasing neonatal susceptibility to bacterial sepsis35
HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization35
Can maternal-child microbial seeding interventions improve the health of infants delivered by Cesarean section?35
Conspecific versus heterospecific transmission shapes host specialization of the phyllosphere microbiome35
To err is human, to forgive may require different vaccines35
Tactical terminase: How a Salmonella prophage navigates oxidative stress35
BCAA-producing Clostridium symbiosum promotes colorectal tumorigenesis through the modulation of host cholesterol metabolism33
Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes33
A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection33
License to LAP33
Milk to mucus: How B. fragilis colonizes the gut33
The bacterial defense system MADS interacts with CRISPR-Cas to limit phage infection and escape33
Aspergillus fumigatus hijacks human p11 to redirect fungal-containing phagosomes to non-degradative pathway33
Defined mouse microbiota: An “evolving” tool33
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