OOIR: Observatory of International Research

Papers

(The TQCC of Cell Host & Microbe is 95. The table below lists those papers that are above that threshold based on CrossRef citation counts. The publications cover those that have been published in the past four years, i.e., from 2019-03-01 to 2023-03-01.)

Article	Citations
Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China	1516
Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria	454
A Mouse Model of SARS-CoV-2 Infection and Pathogenesis	431
Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans	354
The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific	314
N6 -Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection	304
Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome	297
Lipid Peroxidation Drives Gasdermin D-Mediated Pyroptosis in Lethal Polymicrobial Sepsis	275
Composition and Variation of the Human Milk Microbiota Are Influenced by Maternal and Early-Life Factors	261
Listeria monocytogenes Triggers AIM2-Mediated Pyroptosis upon Infrequent Bacteriolysis in the Macrophage Cytosol	251
Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis	249
Surviving as a Community: Antibiotic Tolerance and Persistence in Bacterial Biofilms	249
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life	243
Getting the “Kill” into “Shock and Kill”: Strategies to Eliminate Latent HIV	236
Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model	235
Innate and Adaptive Immune Memory: an Evolutionary Continuum in the Host’s Response to Pathogens	227
Defective HIV-1 Proviruses Are Expressed and Can Be Recognized by Cytotoxic T Lymphocytes, which Shape the Proviral Landscape	219
Adaptive Evolution within Gut Microbiomes of Healthy People	215
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations	208
Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease	195
Malassezia Is Associated with Crohn’s Disease and Exacerbates Colitis in Mouse Models	187
Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition	187
Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets	179
Regional Diversity of the Gastrointestinal Microbiome	173
Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis	162
A Diet-Sensitive Commensal Lactobacillus Strain Mediates TLR7-Dependent Systemic Autoimmunity	155
Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis	148
The Landscape of Genetic Content in the Gut and Oral Human Microbiome	147
(Ph)ighting Phages: How Bacteria Resist Their Parasites	146
Small RNAs – Big Players in Plant-Microbe Interactions	143
Plant-Microbe Interactions Facing Environmental Challenge	138
Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages	135
A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions	131
Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet	130
A Phytophthora Effector Suppresses Trans-Kingdom RNAi to Promote Disease Susceptibility	129
Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy	129
Stressed Out About Hormones: How Plants Orchestrate Immunity	127
Structural Basis of HIV-1 Tethering to Membranes by the BST-2/Tetherin Ectodomain	126
Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins	125
Commensal Candida albicans Positively Calibrates Systemic Th17 Immunological Responses	116
Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth	115
Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition	114
Candida albicans Morphogenesis Programs Control the Balance between Gut Commensalism and Invasive Infection	111
A Gut Commensal Bacterium Promotes Mosquito Permissiveness to Arboviruses	110
Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs	110
Segmented Filamentous Bacteria Provoke Lung Autoimmunity by Inducing Gut-Lung Axis Th17 Cells Expressing Dual TCRs	108
Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects	108
The Inhibitory Innate Immune Sensor NLRP12 Maintains a Threshold against Obesity by Regulating Gut Microbiota Homeostasis	107
Non-traditional Antibacterial Therapeutic Options and Challenges	106
Neutrophil Extracellular Traps Confine Pseudomonas aeruginosa Ocular Biofilms and Restrict Brain Invasion	106
Epitranscriptomic Addition of m5C to HIV-1 Transcripts Regulates Viral Gene Expression	106
A Surface-Induced Asymmetric Program Promotes Tissue Colonization by Pseudomonas aeruginosa	105
Broad Targeting Specificity during Bacterial Type III CRISPR-Cas Immunity Constrains Viral Escape	104
Helicobacter pylori Employs a Unique Basolateral Type IV Secretion Mechanism for CagA Delivery	99
Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope	99
The Skin Commensal Yeast Malassezia Triggers a Type 17 Response that Coordinates Anti-fungal Immunity and Exacerbates Skin Inflammation	97
Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence	96
HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs	95
Influenza Virus Vaccination Elicits Poorly Adapted B Cell Responses in Elderly Individuals	95