OOIR: Observatory of International Research

Papers

(The median citation count of Interdisciplinary Sciences-Computational Life Sciences is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Using Network Distance Analysis to Predict lncRNA–miRNA Interactions	145
A machine learning-based framework for diagnosis of COVID-19 from chest X-ray images	134
DON: Deep Learning and Optimization-Based Framework for Detection of Novel Coronavirus Disease Using X-ray Images	104
Deep Learning Based Capsule Neural Network Model for Breast Cancer Diagnosis Using Mammogram Images	99
Brain Tumor Detection and Classification Using Cycle Generative Adversarial Networks	43
Machine Learning Applications in Drug Repurposing	43
Inferring Gene Regulatory Networks Using the Improved Markov Blanket Discovery Algorithm	42
COVID-19 in the Age of Artificial Intelligence: A Comprehensive Review	40
Clinical and Laboratory Approach to Diagnose COVID-19 Using Machine Learning	39
Wavelet Transform and Deep Convolutional Neural Network-Based Smart Healthcare System for Gastrointestinal Disease Detection	37
Classification of COVID-19 by Compressed Chest CT Image through Deep Learning on a Large Patients Cohort	34
EnANNDeep: An Ensemble-based lncRNA–protein Interaction Prediction Framework with Adaptive k-Nearest Neighbor Classifier and Deep Models	29
Enabling Artificial Intelligence for Genome Sequence Analysis of COVID-19 and Alike Viruses	28
LPCANet: Classification of Laryngeal Cancer Histopathological Images Using a CNN with Position Attention and Channel Attention Mechanisms	26
Are the Allergic Reactions of COVID-19 Vaccines Caused by mRNA Constructs or Nanocarriers? Immunological Insights	26
MutagenPred-GCNNs: A Graph Convolutional Neural Network-Based Classification Model for Mutagenicity Prediction with Data-Driven Molecular Fingerprints	25
Enhanced Evolutionary Feature Selection and Ensemble Method for Cardiovascular Disease Prediction	25
In silico Methods for Identification of Potential Therapeutic Targets	24
Hantavirus: The Next Pandemic We Are Waiting For?	23
Computational Methods and Online Resources for Identification of piRNA-Related Molecules	22
Accurately Discriminating COVID-19 from Viral and Bacterial Pneumonia According to CT Images Via Deep Learning	20
HD5 and LL-37 Inhibit SARS-CoV and SARS-CoV-2 Binding to Human ACE2 by Molecular Simulation	19
A Novel Image Encryption Scheme for DNA Storage Systems Based on DNA Hybridization and Gene Mutation	18
DeepStack-DTIs: Predicting Drug–Target Interactions Using LightGBM Feature Selection and Deep-Stacked Ensemble Classifier	17
A Novel Protein Mapping Method for Predicting the Protein Interactions in COVID-19 Disease by Deep Learning	17

Ensemble Deep Learning Based on Multi-level Information Enhancement and Greedy Fuzzy Decision for Plant miRNA–lncRNA Interaction Prediction	17
A Radiomics Signature to Quantitatively Analyze COVID-19-Infected Pulmonary Lesions	15
Nonclinical Features in Predictive Modeling of Cardiovascular Diseases: A Machine Learning Approach	15
In Silico Mutagenesis-Based Remodelling of SARS-CoV-1 Peptide (ATLQAIAS) to Inhibit SARS-CoV-2: Structural-Dynamics and Free Energy Calculations	15
BMRI-NET: A Deep Stacked Ensemble Model for Multi-class Brain Tumor Classification from MRI Images	15
A Review of Parallel Implementations for the Smith–Waterman Algorithm	14
CEGSO: Boosting Essential Proteins Prediction by Integrating Protein Complex, Gene Expression, Gene Ontology, Subcellular Localization and Orthology Information	13
Construction of a Pearson- and MIC-Based Co-expression Network to Identify Potential Cancer Genes	12
Pathogenic Factors Identification of Brain Imaging and Gene in Late Mild Cognitive Impairment	12
A Hierarchical Error Correction Strategy for Text DNA Storage	12
Accurate Prediction of Anti-hypertensive Peptides Based on Convolutional Neural Network and Gated Recurrent unit	11
Mathematical Modeling of Calcium Oscillatory Patterns in a Neuron	11
MVGCNMDA: Multi-view Graph Augmentation Convolutional Network for Uncovering Disease-Related Microbes	11
Predicting circRNA-Disease Associations Based on Deep Matrix Factorization with Multi-source Fusion	11
PredAPP: Predicting Anti-Parasitic Peptides with Undersampling and Ensemble Approaches	11
The Application of Convolutional Neural Network Model in Diagnosis and Nursing of MR Imaging in Alzheimer's Disease	11
Deep Residual Network for Diagnosis of Retinal Diseases Using Optical Coherence Tomography Images	11
Deep-Learning-Based Segmentation and Localization of White Matter Hyperintensities on Magnetic Resonance Images	10
i6mA-VC: A Multi-Classifier Voting Method for the Computational Identification of DNA N6-methyladenine Sites	10
MSResG: Using GAE and Residual GCN to Predict Drug–Drug Interactions Based on Multi-source Drug Features	10
SUSCC: Secondary Construction of Feature Space based on UMAP for Rapid and Accurate Clustering Large-scale Single Cell RNA-seq Data	10
A Novel Multitasking Ant Colony Optimization Method for Detecting Multiorder SNP Interactions	10
Multiple Protein Subcellular Locations Prediction Based on Deep Convolutional Neural Networks with Self-Attention Mechanism	9
Genomic sequence analysis of lung infections using artificial intelligence technique	9
A New Sequential Forward Feature Selection (SFFS) Algorithm for Mining Best Topological and Biological Features to Predict Protein Complexes from Protein–Protein Interaction Networks (PPINs)	9
Feature Generalization for Breast Cancer Detection in Histopathological Images	9
RicENN: Prediction of Rice Enhancers with Neural Network Based on DNA Sequences	9
Predicting Drug Synergy and Discovering New Drug Combinations Based on a Graph Autoencoder and Convolutional Neural Network	8
HTRPCA: Hypergraph Regularized Tensor Robust Principal Component Analysis for Sample Clustering in Tumor Omics Data	8
Molecular Identification and Phylogenetic Analysis of the Traditional Chinese Medicinal Plant Kochia scoparia Using ITS2 Barcoding	8
Protein Subcellular Localization Prediction Model Based on Graph Convolutional Network	8
Biomarker Identification in Membranous Nephropathy Using a Long Non-coding RNA-Mediated Competitive Endogenous RNA Network	8
LncRNA-Encoded Short Peptides Identification Using Feature Subset Recombination and Ensemble Learning	7
Target-Based In Silico Screening for Phytoactive Compounds Targeting SARS-CoV-2	7
FTWSVM-SR: DNA-Binding Proteins Identification via Fuzzy Twin Support Vector Machines on Self-Representation	7
CNNLSTMac4CPred: A Hybrid Model for N4-Acetylcytidine Prediction	7
Dual Attention Mechanisms and Feature Fusion Networks Based Method for Predicting LncRNA-Disease Associations	7
ASI-DBNet: An Adaptive Sparse Interactive ResNet-Vision Transformer Dual-Branch Network for the Grading of Brain Cancer Histopathological Images	7
Application of Immune Checkpoint Inhibitors in Solid Organ Transplantation Recipients: A Systematic Review	7
Adaptive Total-Variation Regularized Low-Rank Representation for Analyzing Single-Cell RNA-seq Data	7
LDAEXC: LncRNA–Disease Associations Prediction with Deep Autoencoder and XGBoost Classifier	6
Utilization of Deep Convolutional Neural Networks for Accurate Chest X-Ray Diagnosis and Disease Detection	6
Discovery of Genetic Biomarkers for Alzheimer’s Disease Using Adaptive Convolutional Neural Networks Ensemble and Genome-Wide Association Studies	6
Identifying Visual Attention Features Accurately Discerning Between Autism and Typically Developing: a Deep Learning Framework	6
Deep Learning-Based Modeling of Drug–Target Interaction Prediction Incorporating Binding Site Information of Proteins	6
A Novel Deep-Learning-Based CADx Architecture for Classification of Thyroid Nodules Using Ultrasound Images	6
Classification of Breast Cancer and Breast Neoplasm Scenarios Based on Machine Learning and Sequence Features from lncRNAs–miRNAs-Diseases Associations	6
easyMF: A Web Platform for Matrix Factorization-Based Gene Discovery from Large-scale Transcriptome Data	6
PredPromoter-MF(2L): A Novel Approach of Promoter Prediction Based on Multi-source Feature Fusion and Deep Forest	6
Discovery of a Natural Product with Potent Efficacy Against SARS-CoV-2 by Drug Screening	6

Cardiac Severity Classification Using Pre Trained Neural Networks	6
Anti-cancer Peptide Recognition Based on Grouped Sequence and Spatial Dimension Integrated Networks	6
Multi-feature Fusion Method Based on Linear Neighborhood Propagation Predict Plant LncRNA–Protein Interactions	6
sORFPred: A Method Based on Comprehensive Features and Ensemble Learning to Predict the sORFs in Plant LncRNAs	5
Prediction of Protein Solubility Based on Sequence Feature Fusion and DDcCNN	5
Automatic Detection of Covid-19 with Bidirectional LSTM Network Using Deep Features Extracted from Chest X-ray Images	5
Sex Differences of Cerebellum and Cerebrum: Evidence from Graph Convolutional Network	5
DNA Sequence Optimization Design of Arithmetic Optimization Algorithm Based on Billiard Hitting Strategy	5
Cervical Cancer Classification From Pap Smear Images Using Deep Convolutional Neural Network Models	5
Integrating Protein–Protein Interaction Networks and Somatic Mutation Data to Detect Driver Modules in Pan-Cancer	5
StoneNet: An Efficient Lightweight Model Based on Depthwise Separable Convolutions for Kidney Stone Detection from CT Images	5
An In Silico Method for Predicting Drug Synergy Based on Multitask Learning	5
SMART v1.0: A Database for Small Molecules with Functional Implications in Plants	5
Identification of Benign and Malignant Lung Nodules in CT Images Based on Ensemble Learning Method	5
Molecular Dynamics Simulations Reveal the Modulated Mechanism of STING Conformation	5
G4Bank: A database of experimentally identified DNA G-quadruplex sequences	5
Protein Multiple Conformation Prediction Using Multi-Objective Evolution Algorithm	4
Lung Cancer Detection and Improving Accuracy Using Linear Subspace Image Classification Algorithm	4
EPI-Mind: Identifying Enhancer–Promoter Interactions Based on Transformer Mechanism	4
Automatic Detection of Genetics and Genomics of Eye Disease Using Deep Assimilation Learning Algorithm	4
Integration of IDPC Clustering Analysis and Interpretable Machine Learning for Survival Risk Prediction of Patients with ESCC	4
Identifiable Temporal Feature Selection via Horizontal Visibility Graph Towards Smart Medical Applications	4
Computer-Aided Diagnosis System for Alzheimer’s Disease Using Positron Emission Tomography Images	4
Extracting Biomedical Entity Relations using Biological Interaction Knowledge	4
Network Analysis Reveals Proteins Associated with Aortic Dilatation in Mucopolysaccharidoses	4
RSCMDA: Prediction of Potential miRNA–Disease Associations Based on a Robust Similarity Constraint Learning Method	4
Spatial–Temporal EEG Fusion Based on Neural Network for Major Depressive Disorder Detection	4
SENSDeep: An Ensemble Deep Learning Method for Protein–Protein Interaction Sites Prediction	4
Vulture-Based AdaBoost-Feedforward Neural Frame Work for COVID-19 Prediction and Severity Analysis System	4
Prediction of Potential MicroRNA–Disease Association Using Kernelized Bayesian Matrix Factorization	4
TP-DDI: A Two-Pathway Deep Neural Network for Drug–Drug Interaction Prediction	4
Using an Ensemble to Identify and Classify Macroalgae Antimicrobial Peptides	4
The Performance Comparison of Gene Co-expression Networks of Breast and Prostate Cancer using Different Selection Criteria	3
Predicting Potential Drug–Disease Associations Based on Hypergraph Learning with Subgraph Matching	3
A Novel Deep Learning Model for Medical Image Segmentation with Convolutional Neural Network and Transformer	3
OTNet: A CNN Method Based on Hierarchical Attention Maps for Grading Arteriosclerosis of Fundus Images with Small Samples	3
Predicting miRNA–Disease Associations by Combining Graph and Hypergraph Convolutional Network	3
FSCAM: CAM-Based Feature Selection for Clustering scRNA-seq	3
Drug Repositioning Based on Deep Sparse Autoencoder and Drug–Disease Similarity	3
Diagnosis of Pancreatic Cancer Using miRNA30e Biosensor	3
Improving the Prediction of Potential Kinase Inhibitors with Feature Learning on Multisource Knowledge	3
Haemodynamic Effects on the Development and Stability of Atherosclerotic Plaques in Arterial Blood Vessel	3
On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome	3
Development of Electrochemical Biosensor for miR204-Based Cancer Diagnosis	3
Evolutionary Algorithm based Ensemble Extractive Summarization for Developing Smart Medical System	3
BoT-Net: a lightweight bag of tricks-based neural network for efficient LncRNA–miRNA interaction prediction	3
DNRLCNN: A CNN Framework for Identifying MiRNA–Disease Associations Using Latent Feature Matrix Extraction with Positive Samples	3
scVAEBGM: Clustering Analysis of Single-Cell ATAC-seq Data Using a Deep Generative Model	2
A Visual Phenotype-Based Differential Diagnosis Process for Rare Diseases	2
Towards Effective Consensus Scoring in Structure-Based Virtual Screening	2
Development of an Expert-Level Right Ventricular Abnormality Detection Algorithm Based on Deep Learning	2
Identifying Lymph Node Metastasis-Related Factors in Breast Cancer Using Differential Modular and Mutational Structural Analysis	2
Gene Selection in a Single Cell Gene Space Based on D–S Evidence Theory	2
Computational Study of Methionine Methylation Process Catalyzed by SETD3	2
Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase	2
GEnDDn: An lncRNA–Disease Association Identification Framework Based on Dual-Net Neural Architecture and Deep Neural Network	2
RNA Folding Based on 5 Beads Model and Multiscale Simulation	2
CD47Binder: Identify CD47 Binding Peptides by Combining Next-Generation Phage Display Data and Multiple Peptide Descriptors	2
Ultra-Fast Computation of Excited-States Spectra for Large Systems: Ultraviolet and Fluorescence Spectra of Proteins	2
TIPD: A Probability Distribution-Based Method for Trajectory Inference from Single-Cell RNA-Seq Data	2
IDDLncLoc: Subcellular Localization of LncRNAs Based on a Framework for Imbalanced Data Distributions	2
A New Framework for Discovering Protein Complex and Disease Association via Mining Multiple Databases	2
TUPDB: Target-Unrelated Peptide Data Bank	2
FEAMR: A Database for Surveillance of Food and Environment-Associated Antimicrobial Resistance	2
A Multi-perspective Model for Protein–Ligand-Binding Affinity Prediction	2
Review of Progress in Diagnostic Studies of Autism Spectrum Disorder Using Neuroimaging	2
Single-Cell Transcriptome Analysis Reveals the Role of Pancreatic Secretome in COVID-19 Associated Multi-organ Dysfunctions	2
RNABPDB: Molecular Modeling of RNA Structure—From Base Pair Analysis in Crystals to Structure Prediction	2
tensorGSEA: Detecting Differential Pathways in Type 2 Diabetes via Tensor-Based Data Reconstruction	2
Developing a Novel Methodology by Integrating Deep Learning and HMM for Segmentation of Retinal Blood Vessels in Fundus Images	2
Metapath-Based Deep Convolutional Neural Network for Predicting miRNA-Target Association on Heterogeneous Network	2
Adaptive Weighted Neighbors Method for Sensitivity Analysis	2