OOIR: Observatory of International Research

Papers

(The median citation count of Interdisciplinary Sciences-Computational Life Sciences is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
A machine learning-based framework for diagnosis of COVID-19 from chest X-ray images	124
Using Network Distance Analysis to Predict lncRNA–miRNA Interactions	123
Deep Learning Based Drug Screening for Novel Coronavirus 2019-nCov	101
DON: Deep Learning and Optimization-Based Framework for Detection of Novel Coronavirus Disease Using X-ray Images	92
Deep Learning Based Capsule Neural Network Model for Breast Cancer Diagnosis Using Mammogram Images	82
Phylogenetic Analysis and Structural Perspectives of RNA-Dependent RNA-Polymerase Inhibition from SARs-CoV-2 with Natural Products	77
Feature Selection for Microarray Data Classification Using Hybrid Information Gain and a Modified Binary Krill Herd Algorithm	45
Inferring Gene Regulatory Networks Using the Improved Markov Blanket Discovery Algorithm	39
COVID19XrayNet: A Two-Step Transfer Learning Model for the COVID-19 Detecting Problem Based on a Limited Number of Chest X-Ray Images	39
Wavelet Transform and Deep Convolutional Neural Network-Based Smart Healthcare System for Gastrointestinal Disease Detection	33
COVID-19 in the Age of Artificial Intelligence: A Comprehensive Review	33
Classification of COVID-19 by Compressed Chest CT Image through Deep Learning on a Large Patients Cohort	31
Machine Learning Applications in Drug Repurposing	28
Brain Tumor Detection and Classification Using Cycle Generative Adversarial Networks	28
Clinical and Laboratory Approach to Diagnose COVID-19 Using Machine Learning	26
Enabling Artificial Intelligence for Genome Sequence Analysis of COVID-19 and Alike Viruses	25
Are the Allergic Reactions of COVID-19 Vaccines Caused by mRNA Constructs or Nanocarriers? Immunological Insights	24
LPCANet: Classification of Laryngeal Cancer Histopathological Images Using a CNN with Position Attention and Channel Attention Mechanisms	22
EnANNDeep: An Ensemble-based lncRNA–protein Interaction Prediction Framework with Adaptive k-Nearest Neighbor Classifier and Deep Models	22
An Effective Convolutional Neural Network for Classifying Red Blood Cells in Malaria Diseases	22
Hantavirus: The Next Pandemic We Are Waiting For?	22
Fully Automatic Arteriovenous Segmentation in Retinal Images via Topology-Aware Generative Adversarial Networks	21
Computational Methods and Online Resources for Identification of piRNA-Related Molecules	21
Accurately Discriminating COVID-19 from Viral and Bacterial Pneumonia According to CT Images Via Deep Learning	18
Enhanced Evolutionary Feature Selection and Ensemble Method for Cardiovascular Disease Prediction	17

MutagenPred-GCNNs: A Graph Convolutional Neural Network-Based Classification Model for Mutagenicity Prediction with Data-Driven Molecular Fingerprints	17
HD5 and LL-37 Inhibit SARS-CoV and SARS-CoV-2 Binding to Human ACE2 by Molecular Simulation	17
A Novel Protein Mapping Method for Predicting the Protein Interactions in COVID-19 Disease by Deep Learning	16
In silico Methods for Identification of Potential Therapeutic Targets	16
Ensemble Deep Learning Based on Multi-level Information Enhancement and Greedy Fuzzy Decision for Plant miRNA–lncRNA Interaction Prediction	15
A Radiomics Signature to Quantitatively Analyze COVID-19-Infected Pulmonary Lesions	14
DeepStack-DTIs: Predicting Drug–Target Interactions Using LightGBM Feature Selection and Deep-Stacked Ensemble Classifier	14
In Silico Mutagenesis-Based Remodelling of SARS-CoV-1 Peptide (ATLQAIAS) to Inhibit SARS-CoV-2: Structural-Dynamics and Free Energy Calculations	13
Retinal Image Analysis for Ocular Disease Prediction Using Rule Mining Algorithms	13
Nonclinical Features in Predictive Modeling of Cardiovascular Diseases: A Machine Learning Approach	13
CEGSO: Boosting Essential Proteins Prediction by Integrating Protein Complex, Gene Expression, Gene Ontology, Subcellular Localization and Orthology Information	12
A Hierarchical Error Correction Strategy for Text DNA Storage	11
The Application of Convolutional Neural Network Model in Diagnosis and Nursing of MR Imaging in Alzheimer's Disease	11
Efficient System Wide Metabolic Pathway Comparisons in Multiple Microbes Using Genome to KEGG Orthology (G2KO) Pipeline Tool	11
i6mA-VC: A Multi-Classifier Voting Method for the Computational Identification of DNA N6-methyladenine Sites	10
AC-Caps: Attention Based Capsule Network for Predicting RBP Binding Sites of LncRNA	10
Review of Artificial Intelligence Applications and Algorithms for Brain Organoid Research	9
MVGCNMDA: Multi-view Graph Augmentation Convolutional Network for Uncovering Disease-Related Microbes	9
Popular Computational Tools Used for miRNA Prediction and Their Future Development Prospects	9
Mathematical Modeling of Calcium Oscillatory Patterns in a Neuron	9
Study on the Mechanisms of Banxia Xiexin Decoction in Treating Diabetic Gastroparesis Based on Network Pharmacology	9
PredAPP: Predicting Anti-Parasitic Peptides with Undersampling and Ensemble Approaches	9
A Novel Multitasking Ant Colony Optimization Method for Detecting Multiorder SNP Interactions	9
Pathogenic Factors Identification of Brain Imaging and Gene in Late Mild Cognitive Impairment	9
Identification of CpG Islands in DNA Sequences Using Short-Time Fourier Transform	8
SUSCC: Secondary Construction of Feature Space based on UMAP for Rapid and Accurate Clustering Large-scale Single Cell RNA-seq Data	8
Deep-Learning-Based Segmentation and Localization of White Matter Hyperintensities on Magnetic Resonance Images	8
Genomic sequence analysis of lung infections using artificial intelligence technique	8
Network Pharmacology Analysis to Uncover the Potential Mechanisms of Lycium barbarum on Colorectal Cancer	8
A New Sequential Forward Feature Selection (SFFS) Algorithm for Mining Best Topological and Biological Features to Predict Protein Complexes from Protein–Protein Interaction Networks (PPINs)	8
A Review of Parallel Implementations for the Smith–Waterman Algorithm	8
Predicting circRNA-Disease Associations Based on Deep Matrix Factorization with Multi-source Fusion	8
Deep Residual Network for Diagnosis of Retinal Diseases Using Optical Coherence Tomography Images	8
Construction of a Pearson- and MIC-Based Co-expression Network to Identify Potential Cancer Genes	8
Theoretical Research on Excited States: Ultraviolet and Fluorescence Spectra of Aromatic Amino Acids	7
Application of Immune Checkpoint Inhibitors in Solid Organ Transplantation Recipients: A Systematic Review	7
Adaptive Total-Variation Regularized Low-Rank Representation for Analyzing Single-Cell RNA-seq Data	7
ASI-DBNet: An Adaptive Sparse Interactive ResNet-Vision Transformer Dual-Branch Network for the Grading of Brain Cancer Histopathological Images	7
Accurate Prediction of Anti-hypertensive Peptides Based on Convolutional Neural Network and Gated Recurrent unit	7
Molecular Identification and Phylogenetic Analysis of the Traditional Chinese Medicinal Plant Kochia scoparia Using ITS2 Barcoding	7
BMRI-NET: A Deep Stacked Ensemble Model for Multi-class Brain Tumor Classification from MRI Images	7
HTRPCA: Hypergraph Regularized Tensor Robust Principal Component Analysis for Sample Clustering in Tumor Omics Data	7
Multiple Protein Subcellular Locations Prediction Based on Deep Convolutional Neural Networks with Self-Attention Mechanism	7
Comprehensive Analysis of Long Non-coding RNA-Associated Competing Endogenous RNA Network in Duchenne Muscular Dystrophy	7
Biomarker Identification in Membranous Nephropathy Using a Long Non-coding RNA-Mediated Competitive Endogenous RNA Network	7
Impact of IL28 Genotypes and Modeling the Interactions of HCV Core Protein on Treatment of Hepatitis C	7
Dual Attention Mechanisms and Feature Fusion Networks Based Method for Predicting LncRNA-Disease Associations	6
FTWSVM-SR: DNA-Binding Proteins Identification via Fuzzy Twin Support Vector Machines on Self-Representation	6
LncRNA-Encoded Short Peptides Identification Using Feature Subset Recombination and Ensemble Learning	6
Discovery of a Natural Product with Potent Efficacy Against SARS-CoV-2 by Drug Screening	6

Classification of Breast Cancer and Breast Neoplasm Scenarios Based on Machine Learning and Sequence Features from lncRNAs–miRNAs-Diseases Associations	6
CNNLSTMac4CPred: A Hybrid Model for N4-Acetylcytidine Prediction	6
RicENN: Prediction of Rice Enhancers with Neural Network Based on DNA Sequences	6
Anti-cancer Peptide Recognition Based on Grouped Sequence and Spatial Dimension Integrated Networks	6
Extracting Biomedical Entity Relations using Biological Interaction Knowledge	5
Target-Based In Silico Screening for Phytoactive Compounds Targeting SARS-CoV-2	5
A Novel Deep-Learning-Based CADx Architecture for Classification of Thyroid Nodules Using Ultrasound Images	5
Impact of Gene Biomarker Discovery Tools Based on Protein–Protein Interaction and Machine Learning on Performance of Artificial Intelligence Models in Predicting Clinical Stages of Breast Cancer	5
Cardiac Severity Classification Using Pre Trained Neural Networks	5
Identifying Visual Attention Features Accurately Discerning Between Autism and Typically Developing: a Deep Learning Framework	5
Protein Subcellular Localization Prediction Model Based on Graph Convolutional Network	5
Automatic Detection of Covid-19 with Bidirectional LSTM Network Using Deep Features Extracted from Chest X-ray Images	5
Discovery of Genetic Biomarkers for Alzheimer’s Disease Using Adaptive Convolutional Neural Networks Ensemble and Genome-Wide Association Studies	5
Multi-feature Fusion Method Based on Linear Neighborhood Propagation Predict Plant LncRNA–Protein Interactions	5
An In Silico Method for Predicting Drug Synergy Based on Multitask Learning	4
Prediction of Potential MicroRNA–Disease Association Using Kernelized Bayesian Matrix Factorization	4
TP-DDI: A Two-Pathway Deep Neural Network for Drug–Drug Interaction Prediction	4
Predicting Hot Spot Residues at Protein–DNA Binding Interfaces Based on Sequence Information	4
Integrating Protein–Protein Interaction Networks and Somatic Mutation Data to Detect Driver Modules in Pan-Cancer	4
SENSDeep: An Ensemble Deep Learning Method for Protein–Protein Interaction Sites Prediction	4
Combining SVM and ECOC for Identification of Protein Complexes from Protein Protein Interaction Networks by Integrating Amino Acids’ Physical Properties and Complex Topology	4
Gene Biomarkers Derived from Clinical Data of Hepatocellular Carcinoma	4
Using an Ensemble to Identify and Classify Macroalgae Antimicrobial Peptides	4
Identifiable Temporal Feature Selection via Horizontal Visibility Graph Towards Smart Medical Applications	4
Feature Generalization for Breast Cancer Detection in Histopathological Images	4
Vulture-Based AdaBoost-Feedforward Neural Frame Work for COVID-19 Prediction and Severity Analysis System	4
RSCMDA: Prediction of Potential miRNA–Disease Associations Based on a Robust Similarity Constraint Learning Method	4
Identification of Benign and Malignant Lung Nodules in CT Images Based on Ensemble Learning Method	4
MSResG: Using GAE and Residual GCN to Predict Drug–Drug Interactions Based on Multi-source Drug Features	4
Evolutionary Algorithm based Ensemble Extractive Summarization for Developing Smart Medical System	3
Improving the Prediction of Potential Kinase Inhibitors with Feature Learning on Multisource Knowledge	3
G4Bank: A database of experimentally identified DNA G-quadruplex sequences	3
Computer-Aided Diagnosis System for Alzheimer’s Disease Using Positron Emission Tomography Images	3
Network Analysis Reveals Proteins Associated with Aortic Dilatation in Mucopolysaccharidoses	3
Predicting Drug Synergy and Discovering New Drug Combinations Based on a Graph Autoencoder and Convolutional Neural Network	3
Sex Differences of Cerebellum and Cerebrum: Evidence from Graph Convolutional Network	3
Molecular Dynamics Simulations Reveal the Modulated Mechanism of STING Conformation	3
Prediction of Protein Solubility Based on Sequence Feature Fusion and DDcCNN	3
Lung Cancer Detection and Improving Accuracy Using Linear Subspace Image Classification Algorithm	3
DNA Sequence Optimization Design of Arithmetic Optimization Algorithm Based on Billiard Hitting Strategy	3
On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome	3
Automatic Detection of Genetics and Genomics of Eye Disease Using Deep Assimilation Learning Algorithm	3
ProtPCV: A Fixed Dimensional Numerical Representation of Protein Sequence to Significantly Reduce Sequence Search Time	3
easyMF: A Web Platform for Matrix Factorization-Based Gene Discovery from Large-scale Transcriptome Data	3
PredPromoter-MF(2L): A Novel Approach of Promoter Prediction Based on Multi-source Feature Fusion and Deep Forest	3
A Novel Image Encryption Scheme for DNA Storage Systems Based on DNA Hybridization and Gene Mutation	3
Utilization of Deep Convolutional Neural Networks for Accurate Chest X-Ray Diagnosis and Disease Detection	3
sORFPred: A Method Based on Comprehensive Features and Ensemble Learning to Predict the sORFs in Plant LncRNAs	3
RNABPDB: Molecular Modeling of RNA Structure—From Base Pair Analysis in Crystals to Structure Prediction	2
tensorGSEA: Detecting Differential Pathways in Type 2 Diabetes via Tensor-Based Data Reconstruction	2
Development of Electrochemical Biosensor for miR204-Based Cancer Diagnosis	2
Gene Selection in a Single Cell Gene Space Based on D–S Evidence Theory	2
SMART v1.0: A Database for Small Molecules with Functional Implications in Plants	2
Integration of IDPC Clustering Analysis and Interpretable Machine Learning for Survival Risk Prediction of Patients with ESCC	2
Review of Progress in Diagnostic Studies of Autism Spectrum Disorder Using Neuroimaging	2
LDAEXC: LncRNA–Disease Associations Prediction with Deep Autoencoder and XGBoost Classifier	2
Towards Effective Consensus Scoring in Structure-Based Virtual Screening	2
TIPD: A Probability Distribution-Based Method for Trajectory Inference from Single-Cell RNA-Seq Data	2
Shiny-DEG: A Web Application to Analyze and Visualize Differentially Expressed Genes in RNA-seq	2
Finding Community Modules for Brain Networks Combined Uniform Design with Fruit Fly Optimization Algorithm	2
A New Framework for Discovering Protein Complex and Disease Association via Mining Multiple Databases	2
BoT-Net: a lightweight bag of tricks-based neural network for efficient LncRNA–miRNA interaction prediction	2
Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase	2
A Visual Phenotype-Based Differential Diagnosis Process for Rare Diseases	2
The Performance Comparison of Gene Co-expression Networks of Breast and Prostate Cancer using Different Selection Criteria	2
Deep Learning-Based Modeling of Drug–Target Interaction Prediction Incorporating Binding Site Information of Proteins	2
Ultra-Fast Computation of Excited-States Spectra for Large Systems: Ultraviolet and Fluorescence Spectra of Proteins	2
Predicting Potential Drug–Disease Associations Based on Hypergraph Learning with Subgraph Matching	2
Diagnosis of Pancreatic Cancer Using miRNA30e Biosensor	2
Metapath-Based Deep Convolutional Neural Network for Predicting miRNA-Target Association on Heterogeneous Network	2
A Novel Human Diabetes Biomarker Recognition Approach Using Fuzzy Rough Multigranulation Nearest Neighbour Classifier Model	2
Spatial–Temporal EEG Fusion Based on Neural Network for Major Depressive Disorder Detection	2
TUPDB: Target-Unrelated Peptide Data Bank	2
DNRLCNN: A CNN Framework for Identifying MiRNA–Disease Associations Using Latent Feature Matrix Extraction with Positive Samples	2
Metatax: Metataxonomics with a Compi-Based Pipeline for Precision Medicine	2
Single-Cell Transcriptome Analysis Reveals the Role of Pancreatic Secretome in COVID-19 Associated Multi-organ Dysfunctions	2