OOIR: Observatory of International Research

Papers

(The TQCC of Biochimica et Biophysica Acta-Gene Regulatory Mechanisms is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
From why to how; The gene expression knowledge commons	35
Illuminating ligand-induced dynamics in nuclear receptors through MD simulations	29
Bioinformatic meta-analysis of transcriptomics of developing Drosophila muscles identifies temporal regulatory transcription factors including a Notch effector	26
Rho-dependent transcription termination is the dominant mechanism in Mycobacterium tuberculosis	26
The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction	23
The nucleolus: Coordinating stress response and genomic stability	21
Histone variant H2B.Z acetylation is necessary for maintenance of Toxoplasma gondii biological fitness	21
Editorial Board	20
Transcriptional landscape of long non-coding RNAs (lncRNAs) and its implication in viral diseases	19
HBO1, a MYSTerious KAT and its links to cancer	15
UBE4A catalyzes NRF1 ubiquitination and facilitates DDI2-mediated NRF1 cleavage	15
Genome-wide survey identifies TNNI2 as a target of KLF7 that inhibits chicken adipogenesis via downregulating FABP4	14
Epigenetic modification facilitates proline synthase PYCR1 aberrant expression in gastric cancer	13
Dietary choline prevents high fat-induced disorder of hepatic cholesterol metabolism through SREBP-2/HNF-4α/CYP7A1 pathway in a freshwater teleost yellow catfish Pelteobagrus fulvidraco	13
Histone acetyltransferase 1 (HAT1) acetylates hypoxia-inducible factor 2 alpha (HIF2A) to execute hypoxia response	12
Proteomic approaches to study ubiquitinomics	11
Dealing with different conceptions of pollution in the Gene Regulation Knowledge Commons	11
Editorial Board	11
Effective role of Curcumin on expression regulation of EZH2 histone methyltransferase as a dynamic epigenetic factor in osteogenic differentiation of human mesenchymal stem cells	11
The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins	10
Editorial Board	10
Differential requirements for different subfamilies of the mammalian SWI/SNF chromatin remodeling enzymes in myoblast cell cycle progression and expression of the Pax7 regulator	10
DDX5 (p68) orchestrates β-catenin, RelA and SP1 mediated MGMT gene expression in human colon cancer cells: Implication in TMZ chemoresistance	10
Post-translational modifications of lysine-specific demethylase 1	10
N/C-degron pathways and inhibitor development for PROTAC applications	10

The versatility of the proteasome in gene expression and silencing: Unraveling proteolytic and non-proteolytic functions	10
The gene regulation knowledge commons: the action area of GREEKC	10
R-loop and its functions at the regulatory interfaces between transcription and (epi)genome	9
Quantitative proteomics revealed the transition of ergosterol biosynthesis and drug transporters processes during the development of fungal fluconazole resistance	9
Post translational modifications at the verge of plant-geminivirus interaction	9
Regulatory systems of chicken alpha-globin gene domain suppress bidirectional transcription	9
Inflammation-induced nitric oxide suppresses PPARα expression and function via downregulation of Sp1 transcriptional activity in adipocytes	9
Sirtuin4 impacts mitochondrial homeostasis in pancreatic cancer cells by reducing the stability of AlkB homolog 1 via deacetylation of the HRD1-SEL1L complex	8
The N-degron pathway: From basic science to therapeutic applications	8
Polycomb repressive complex 1 initiates and maintains tailless repression in Drosophila embryo	8
Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)	8
Ser392 phosphorylation modulated a switch between p53 and transcriptional condensates	8
The yeast mRNA-binding protein Cth2 post-transcriptionally modulates ergosterol biosynthesis in response to iron deficiency	8
The mechanism of UP1 binding and unfolding of human telomeric DNA G-quadruplex	8
EBV infection alters DNA methylation in primary human colon cells: A path to inflammation and carcinogenesis?	8
METTL3 activates PERK-eIF2α dependent coelomocyte apoptosis by targeting the endoplasmic reticulum degradation-related protein SEL1L in echinoderms	8
Differences and similarities in recognition of co-factors by Taf14	8
The moonlighting of RAD23 in DNA repair and protein degradation	8
Disruption of the gene regulatory programme in neurodevelopmental disorders	7
The fine-tuned crosstalk between lysine acetylation and the circadian rhythm	7
Human stem cell-specific epigenetic signatures control transgene expression	7
KDM5A noncanonically binds antagonists MLL1/2 to mediate gene regulation and promotes epithelial to mesenchymal transition	7
Machine learning based analysis of single-cell data reveals evidence of subject-specific single-cell gene expression profiles in acute myeloid leukaemia patients and healthy controls	7
The presence of an intron relieves gene repression caused by promoter-proximal four-bp specific sequences in yeast	7
GLI1, a novel target of the ER stress regulator p97/VCP, promotes ATF6f-mediated activation of XBP1	7
UPS regulation of gene expression and genome integrity	7
WT1 regulates HOXB9 gene expression in a bidirectional way	7
Unraveling the battle for lysine: A review of the competition among post-translational modifications	7
Allelic variation within the major APOE CpG island affects its methylation in the brain of targeted replacement mice expressing human APOE	7
Influence of cell volume on the gene transcription rate	7
AutoFAIR-A portal for automating FAIR assessments for bioinformatics resources	7
Metabolic substrates, histone modifications, and heart failure	6
Isolation and characterisation of promoters from mouse genome to drive post-meiotic germ cell-specific robust gene expression for functional genomics studies	6
The functions of FOXP transcription factors and their regulation by post-translational modifications	6
Identification of a novel alternatively spliced isoform of the ribosomal uL10 protein	6
Ubiquitination is a major modulator for the activation of inflammasomes and pyroptosis	6
A novel endoplasmic reticulum adaptation is critical for the long-lived Caenorhabditis elegans rpn-10 proteasomal mutant	6
Regulation of c-Kit gene transcription selectively by bisacridine derivative through promoter dual i-motif structures	6
Epigenetic oncogenesis, biomarkers and emerging chemotherapeutics for breast cancer	6
Transcriptional responses of three slc39a/zip members (zip4, zip5 and zip9) and their roles in Zn metabolism in grass carp (Ctenopharyngodon idella)	6
Protein post-translational modifications: A key factor in colorectal cancer resistance mechanisms	6
MicroRNA-27a-3p targeting Vangl1 and Vangl2 inhibits cell proliferation in mouse granulosa cells	6
NtcA, LexA and heptamer repeats involved in the multifaceted regulation of DNA repair genes recF, recO and recR in the cyanobacterium Nostoc PCC7120	6