OOIR: Observatory of International Research

Papers

(The TQCC of Biochimica et Biophysica Acta-Gene Regulatory Mechanisms is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Close to the edge: Heterochromatin at the nucleolar and nuclear peripheries	67
From start to end: Phase separation and transcriptional regulation	60
GCN5 acetyltransferase in cellular energetic and metabolic processes	43
What do the structures of GCN5-containing complexes teach us about their function?	26
Complex functions of Gcn5 and Pcaf in development and disease	24
Non-histone protein acetylation by the evolutionarily conserved GCN5 and PCAF acetyltransferases	23
SAGA and TFIID: Friends of TBP drifting apart	22
Structural insights into piRNA biogenesis	21
Multifaceted activities of the plant SAGA complex	21
Chromatin structure meets cryo-EM: Dynamic building blocks of the functional architecture	20
Crosstalk of promoter and terminator during RNA polymerase II transcription cycle	20
Japanese Encephalitis Virus exploits microRNA-155 to suppress the non-canonical NF-κB pathway in human microglial cells	19
The biochemical and genetic discovery of the SAGA complex	19
Gene Ontology representation for transcription factor functions	19
R-loop and its functions at the regulatory interfaces between transcription and (epi)genome	18
The Ada2/Ada3/Gcn5/Sgf29 histone acetyltransferase module	18
Molecular basis of transcriptional pausing, stalling, and transcription-coupled repair initiation	17
Chemical biology and pharmacology of histone lysine methylation inhibitors	17
WT1 activates transcription of the splice factor kinase SRPK1 gene in PC3 and K562 cancer cells in the absence of corepressor BASP1	16
A GO catalogue of human DNA-binding transcription factors	16
Ser392 phosphorylation modulated a switch between p53 and transcriptional condensates	15
Drosophila architectural protein CTCF is not essential for fly survival and is able to function independently of CP190	14
Transcription initiation as a control point in plastid gene expression	14
Epigenetic modifications of histones during osteoblast differentiation	13
The SAGA continues: The rise of cis- and trans-histone crosstalk pathways	12

The 3D genomic landscape of differential response to EGFR/HER2 inhibition in endocrine-resistant breast cancer cells	12
Ubiquitination and deubiquitination: Implications on cancer therapy	12
Impaired cell migration and structural defects in myeloid cells overexpressing miR-30b and miR-142-3p	11
The Gcn5 complexes in Drosophila as a model for metazoa	11
Entanglement of MAPK pathways with gene expression and its omnipresence in the etiology for cancer and neurodegenerative disorders	11
Differential requirements for different subfamilies of the mammalian SWI/SNF chromatin remodeling enzymes in myoblast cell cycle progression and expression of the Pax7 regulator	10
METTL3 inhibition ameliorates liver damage in mouse with hepatitis B virus-associated acute-on-chronic liver failure by regulating miR-146a-5p maturation	10
Enhanced gene regulation by cooperation between mRNA decay and gene transcription	10
Crystal structure of the BRPF2 PWWP domain in complex with DNA reveals a different binding mode than the HDGF family of PWWP domains	10
Aberrant gene expression induced by a high fat diet is linked to H3K9 acetylation in the promoter-proximal region	9
Tumor-specific overexpression of histone gene, H3C14 in gastric cancer is mediated through EGFR-FOXC1 axis	9
Catalysis by protein acetyltransferase Gcn5	9
Transcriptional responses of four slc30a/znt family members and their roles in Zn homeostatic modulation in yellow catfish Pelteobagrus fulvidraco	9
Nucleo-cytoplasmic shuttling of RNA-binding factors: mRNA buffering and beyond	9
Metabolic substrates, histone modifications, and heart failure	9
The emerging roles of GCN5L1 in mitochondrial and vacuolar organelle biology	9
The VRK1 chromatin kinase regulates the acetyltransferase activity of Tip60/KAT5 by sequential phosphorylations in response to DNA damage	8
Proteomic approaches to study ubiquitinomics	8
CRISPRi-mediated depletion of Spt4 and Spt5 reveals a role for DSIF in the control of HIV latency	8
The linker histone Hho1 modulates the activity of ATP-dependent chromatin remodeling complexes	8
Pathogenic KDM5B variants in the context of developmental disorders	8
Identification of genome-wide targets and DNA recognition sequence of the Arabidopsis HMG-box protein AtHMGB15 during cold stress response	8
Sinomenine increases the methylation level at specific GCG site in mPGES-1 promoter to facilitate its specific inhibitory effect on mPGES-1	7
Enzymatic nucleosome acetylation selectively affects activity of histone methyltransferases in vitro	7
Molecular underpinnings of the early brain developmental response to differential feeding in the honey bee Apis mellifera	7
Network-driven discovery yields new insight into Shox2-dependent cardiac rhythm control	7
ExTRI: Extraction of transcription regulation interactions from literature	7
Nuclear receptor SHP dampens transcription function and abrogates mitotic chromatin association of PXR and ERα via intermolecular interactions	7
A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes	7
Hypoxia regulates allele-specific histone modification of the imprinted H19 gene	7
siRNA enrichment in Argonaute 2-depleted Blattella germanica	7
Sequence-dependent model of genes with dual σ factor preference	7
Function and regulation of the Spt-Ada-Gcn5-Acetyltransferase (SAGA) deubiquitinase module	7
Ubiquitination is a major modulator for the activation of inflammasomes and pyroptosis	7
Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes	7
Selenoprotein F (SELENOF)-mediated AKT1-FOXO3a-PYGL axis contributes to selenium supranutrition-induced glycogenolysis and lipogenesis	7
The emerging regulatory mechanisms and biological function of circular RNAs in skeletal muscle development	6
Cell cycle roles for GCN5 revealed through genetic suppression	6
Disease-associated non-coding variants alter NKX2-5 DNA-binding affinity	6
Sequence Ontology terminology for gene regulation	6
Polymorphisms rs55710213 and rs56334587 regulate SCD1 expression by modulating HNF4A binding	6
Protein post-translational modifications: A key factor in colorectal cancer resistance mechanisms	6
AURTHO: Autoregulation of transcription factors as facilitator of cis-acting element discovery	6
The N-degron pathway: From basic science to therapeutic applications	6
Competitive binding of TET1 and DNMT3A/B cooperates the DNA methylation pattern in human embryonic stem cells	6
Epigenetic oncogenesis, biomarkers and emerging chemotherapeutics for breast cancer	6
Identifying distinct heterochromatin regions using combinatorial epigenetic probes in live cells	6
TRIM25-mediated ubiquitination of G3BP1 regulates the proliferation and migration of human neuroblastoma cells	6
The promiscuity of the SAGA complex subunits: Multifunctional or moonlighting proteins?	6
The ATP-dependent SWI/SNF and RSC chromatin remodelers cooperatively induce unfolded protein response genes during endoplasmic reticulum stress	6

MicroRNAs mediated regulation of glutathione peroxidase 7 expression and its changes during adipogenesis