OOIR: Observatory of International Research

Papers

(The TQCC of Marine Genomics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
t-Distributed Stochastic Neighbor Embedding (t-SNE): A tool for eco-physiological transcriptomic analysis	109
Improved genomic resources for the black tiger prawn (Penaeus monodon)	23
The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga	23
New bacterial and archaeal lineages discovered in organic rich sediments of a large tropical Bay	22
The genome of the sea anemone Actinia equina (L.): Meiotic toolkit genes and the question of sexual reproduction	17
Seasonal gene expression profiling of Antarctic krill in three different latitudinal regions	14
A review of the potential genes implicated in follicular atresia in teleost fish	12
Genomic differences within the phylum Marinimicrobia: From waters to sediments in the Mariana Trench	12
Whole genome sequencing of four bacterial strains from South Shetland Trench revealing biosynthetic and environmental adaptation gene clusters	12
Comparative de novo assembly and annotation of mantle tissue transcriptomes from the Mytilus edulis species complex (M. edulis, M. galloprovincialis, M. trossulus)	11
Metagenomic profiling of host-associated bacteria from 8 datasets of the red alga Porphyra purpurea with MetaPhlAn3	11
Transcriptomic analysis of brine shrimp Artemia franciscana across a wide range of salinities	10
Complete genome sequence of Bacillus sp. N1-1, a κ-selenocarrageenan degrading bacterium isolated from the cold seep in the South China Sea	10
Complete genome sequence of an Arctic Ocean bacterium Shewanella sp. Arc9-LZ with capacity of synthesizing silver nanoparticles in darkness	10
Genomic characterization of filamentous phage vB_VpaI_VP-3218, an inducible prophage of Vibrio parahaemolyticus	10
The Atlantic salmon whole blood transcriptome and how it relates to major locus maturation genotypes and other tissues	9
Complete genome sequence of Streptomyces sp. SCSIO 03032 isolated from Indian Ocean sediment, producing diverse bioactive natural products	9
De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression	8
Transcriptome expression profiles between diploid and triploid Pacific abalone (Haliotis discus hannai) juveniles in response to acute heat-stress and hypoxia treatments	7
Looking for the hidden: Characterization of lysogenic phages in potential pathogenic Vibrio species from the North Sea	7
Aquaculture omics: An update on the current status of research and data analysis	7
First de novo transcriptome assembly of Iwagaki oyster, Crassostrea nippona, and comparative evolutionary analysis of salinity-stress response genes in Crassostrea oysters	7
Genome sequencing and analysis of a psychrotrophic methanogen Methanosarcina sp. nov. MSH10X1 cultured from methane hydrate deposits of Krishna Godavari Basin of India	7
Transcriptome profiling of the early developmental stages in the giant mussel Choromytilus chorus exposed to delousing drugs	7
Complete genome sequence of Marinobacter sp. LQ44, a haloalkaliphilic phenol-degrading bacterium isolated from a deep-sea hydrothermal vent	7

Complete genome sequence of Methanofervidicoccus sp. A16, a thermophilic methanogen isolated from Mid Cayman Rise hydrothermal vent	7
Complete genome sequence of Acinetobacter baumanni J1, a quorum sensing-producing algicidal bacterium, isolated from Eastern Pacific Ocean	7
Complete genome sequence of Desulfobacter hydrogenophilus AcRS1	7
First transcriptome assembly of a newly discovered vent mussel, Gigantidas vrijenhoeki, at Onnuri Vent Field on the northern Central Indian Ridge	6
Phylotranscriptomics confirms Alveopora is sister to Montipora within the family Acroporidae	6
De novo assembly and functional annotation of the heart + hemolymph transcriptome in the Caribbean spiny lobster Panulirus argus	6
Genome analysis of a new biosurfactants source: The Antarctic bacterium Psychrobacter sp. TAE2020	6
Metagenomic and Recombination Analyses of Antimicrobial Resistance Genes from Recreational Waters of Black Sea Coastal Areas and Other Marine Environments Unveil Extensive Evidence for Their both Intr	6
Genomic insights into antioxidant activities of Pyruvatibacter mobilis CGMCC 1.15125T, a pyruvate-requiring bacterium isolated from the marine microalgae culture	6
Effects of sampling and storage procedures on 16S rDNA amplicon sequencing results of kelp microbiomes	6
Complete genome sequence of Echinicola rosea JL3085, a xylan and pectin decomposer	6
Transcriptomic responses of saline-adapted Nile tilapia (Oreochromis niloticus) to rearing in both saline and freshwater	6
A first genomic portrait of the Florida stone crab Menippe mercenaria: Genome size, mitochondrial chromosome, and repetitive elements	6
Microscopic ossicle analyses and the complete mitochondrial genome sequence of Holothuria (Roweothuria) polii (Echinodermata; Holothuroidea) provide new information to support the phylogenetic positio	6
The isolation and genome sequencing of a novel cyanophage S-H68 from the Bohai Sea, China	6
Complete genome sequence of a piezophilic bacterium Salinimonas sediminis N102T, isolated from deep-sea sediment of the New Britain Trench	5
Complete genome sequence of Paracoccus sp. Arc7-R13, a silver nanoparticles synthesizing bacterium isolated from Arctic Ocean sediments	5
Benefits of merging paired-end reads before pre-processing environmental metagenomics data	5
A comprehensive non-redundant reference transcriptome for the Atlantic silverside Menidia menidia	5
Regulation of globin expression in Antarctic fish under thermal and hypoxic stress	5
Genome sequence of an obligate hydrocarbonoclastic bacterium Alcanivorax marinus NMRL4 isolated from oil polluted seawater of the Arabian Sea	5
De novo transcriptome sequencing of triton shell Charonia lampas sauliae: Identification of genes related to neurotoxins and discovery of genetic markers	5
Comparative genomics and signatures of selection in North Atlantic eels	5
Bimodal distribution of seafloor microbiota diversity and function are associated with marine aquaculture	4
Complete genome of Sulfitobacter sp. BSw21498 isolated from seawater of Arctic Kongsfjorden	4
De novo transcriptome sequencing of the thecate colonial hydrozoan, Dynamena pumila	4
Complete genome sequence of a high cesium ion- tolerating bacterium Bacillus sp. Cs-700 isolated from the South China Sea sediment	4
Transcriptomic response of intertidal brittle star Ophiothrix exigua to seasonal variation	4
The complete genome of extracellular protease-producing Deinococcus sp. D7000 isolated from the hadal region of Mariana Trench Challenger Deep	4
Genome analysis of Crassaminicella sp. SY095, an anaerobic mesophilic marine bacterium isolated from a deep-sea hydrothermal vent on the Southwest Indian Ridge	4
De novo assembly and annotation of the transcriptome of Astyanax lacustris liver unveil candidate genes to monitor response to environmental stress	4
Genome sequence of five Zetaproteobacteria metagenome-assembled genomes recovered from hydrothermal vent Longqi, Southwest Indian Ridge	4
Genome sequencing and comparative genomics analysis of Halomonas sp. MT13 reveal genetic adaptation to deep-sea environment	4
Genomic analysis of Microbacterium sediminis YLB-01T reveals backgrounds related to its deep-sea environment adaptation	4
The first transcriptomic resource for the flatworm Triaenophorus nodulosus (Cestoda: Bothriocephalidea), a common parasite of holarctic freshwater fish	4