OOIR: Observatory of International Research

Papers

(The median citation count of Marine Genomics is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3–1 confirmed its high potential for antimicrobial activity	21
De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression	18
Complete genome of Nocardioides aquaticus KCTC 9944T isolated from meromictic and hypersaline Ekho Lake, Antarctica	14
Aquaculture omics: An update on the current status of research and data analysis	12
Bioactivity of bacteria associated with Red Sea nudibranchs and whole genome sequence of Nocardiopsis dassonvillei RACA-4	12
De novo transcriptome assembly of the deep-sea hydrothermal vent, shrimp Rimicaris exoculate (Crustacea: Decapoda), from the south Mid-Atlantic Ridge	10
Complete genome of Pelagovum pacificum SM1903T isolated from the marine surface oligotrophic environment	10
Editorial Board	10
Complete genome sequence of Pseudoalteromonas sp. Xi13 capable of degrading κ-selenocarrageenan isolated from the floating ice of Southern Ocean	9
Genomic characteristics of nine Nitrospirota metagenome-assembled genomes in deep-sea sediments from East Pacific polymetallic nodules zone	8
Genomic analysis of Thalassospira sp. SW-3-3 reveals its genetic potential for phthalate pollution remediation	8
The complete genome sequence of Shewanella inventionis D1489 reveals its potential for the production of eicosapentaenoic acid	8
Complete genome sequence of Polaribacter sejongensis NJDZ03 exhibiting diverse macroalgal polysaccharide-degrading activity	8
Genomic analysis of Isoptericola halotolerans SM2308 reveals its potential involved in fucoidan degradation	7
Complete genome analysis of copper resistant bacteria Pseudoalteromonas sp. CuT4–3 isolated from a deep-sea hydrothermal vent	7
Editorial Board	7
Genomic divergence and differential gene expression between crustacean ecotypes across a marine thermal gradient	7
Complete genome of Polaribacter huanghezhanensis KCTC 32516T isolated from glaciomarine fjord sediment of Svalbard	7
Genomic analysis of Alteromonas sp. M12 isolated from the Mariana Trench reveals its role in dimethylsulfoniopropionate cycling	7
RNA-seq analysis of the mantle transcriptome from Mytilus edulis during a seasonal spawning event in deep and shallow water culture sites on the northeast coast of Newfoundland, Canada	7
Genomic analysis of Rhodopirellula sp. P2 reveals its role in fucoidan degradation	6
Complete genome sequence of the denitrifying Pseudomonas sp. strain DNDY-54 isolated from deep-sea sediment of ninety east ridge	6
Iso-Seq assembly and functional annotation of full-length transcriptome of turbot (Scophthalmus maximus) during bacterial infection	6
De novo assembly and annotation of the whole transcriptome of Muraenesox cinereus	6
Complete genome sequence of Psychrobacter cibarius AOSW16051, a trimeric autotransporter adhesin synthesizing bacterium isolated from the Baltic Sea	6

Genome analysis of the heterotrophic microalga Thraustochytrium sp. TN22 to identify genes involved in exopolysaccharide and carotenoid biosynthesis pathways	6
Editorial Board	6
Complete genome analysis of Bacillus subtilis TY-1 reveals its biocontrol potential against tobacco bacterial wilt	6
Genomic analysis of Vibrio sp. D3 reveals its role in marine sulfur cycling	6
Editorial Board	6
Isolation and genome sequencing of a novel lytic Pseudoalteromonas phage SL20	6
Genome analysis of Salinimicrobium sp. 3283s, a deep-sea bacterium isolated from the sediments of South China Sea, China	5
Genomic analysis of a marine alphaproteobacterium Sagittula sp. strain MA-2 that carried eight plasmids	5
Transcriptome responses in copepods Calanus finmarchicus, Calanus glacialis and Calanus hyperboreus exposed to phenanthrene and benzo[a]pyrene	5
Genomic insights into secondary metabolites of pharmaceutical utility for Hyphococcus flavus MCCC 1K03223T, isolated from bathypelagic seawater	5
Effects of sampling and storage procedures on 16S rDNA amplicon sequencing results of kelp microbiomes	5
Genome analysis of a new biosurfactants source: The Antarctic bacterium Psychrobacter sp. TAE2020	5
Complete genome sequence analysis of Bacillus velezensis A5, a promising biocontrol agent from the Pacific Ocean	4
The complete genome sequence of Stenotrophomonas sp. P2112 for genome mining of polyvinyl chloride degrading enzymes	4
Genomic analysis of Marinobacter flavimaris ZYH30 reveals its role in marine dimethylsulfide cycling	4
First certain record of Demospongiae class (Porifera) alien species from the Mediterranean Sea	4
Complete genome sequence of the novel Antarctic Oceanisphaera sp. IT1–181 that carried five plasmids	4
Genomic profiling of biosynthetic potentials of medicinal secondary metabolites for ‘Aliisedimentitalea scapharcae’ KCTC 42119T, isolated from ark shell	4
Genomic insights into Marinobacterium sediminicola CGMCC 1.7287T: A polyhydroxyalkanoate-producing bacterium isolated from marine sediment	4
Genomic analysis of Cobetia sp. D5 reveals its role in marine sulfur cycling	4
A first look at the ‘repeatome’ of Benedenia humboldti, a major pathogen in yellowtail aquaculture: Repetitive element characterization, nuclear rRNA operon assembly, and microsatellite discovery	4
Complete genome sequence of pectin-degrading Flavobacteriaceae bacterium GSB9	4
Complete genome sequence of marine Roseobacter lineage member Monaibacterium sp. ALG8 with six plasmids isolated from seawater around brown algae	4
Complete genome sequence of Halomonas alkaliantarctica MSP3 isolated from marine sediment, Jeju Island	4
Complete genome sequence of Rhodoferax sp. PAMC 29310 from a marine sediment of the East Siberian Sea	4
A first annotated genome sequence for Haliotis midae with genomic insights into abalone evolution and traits of economic importance	4
Genomic analysis of Sulfitobacter sp. PM12 reveals its role in betaine metabolism	4
Complete genome sequence of Kordiimonas pumila N18T sheds light on biogeochemical roles of the genus Kordiimonas	3
Genome sequencing and comparative genomics analysis of Halomonas sp. MT13 reveal genetic adaptation to deep-sea environment	3
Complete genome analysis of type strain of a novel bacterial family Temperatibacteraceae fam. nov., isolated from surface seawater	3
Skin distress associated with xenobiotics exposure: An epigenetic study in the Mediterranean fin whale (Balaenoptera physalus)	3
Mining Chromodoris quadricolor symbionts for biosynthesis of novel secondary metabolites	3
Transcriptome analysis of the ink sac and brain tissues from Sepiella inermis: A resource for discovering genes related to the inking of cephalopods	3
Editorial Board	3
Bimodal distribution of seafloor microbiota diversity and function are associated with marine aquaculture	3
Complete genome sequence of Shewanella marisflavi ECSMB14101, a red pigment synthesizing bacterium isolated from the East China Sea	3
Genome analysis of Rossellomorea sp. y25, a deep sea bacterium isolated from the sediments of South China Sea	3
Transcriptomic responses of saline-adapted Nile tilapia (Oreochromis niloticus) to rearing in both saline and freshwater	3
Complete genome analysis of deep-sea hydrothermal sulfur-oxidizing bacterium Sulfitobacter sp. TCYB15 associated with mussel Bathymodiolus marisindicus and insights into its habitat adaptation	3
Complete genome of Rossellomorea sp. DA94, an agarolytic and orange-pigmented bacterium isolated from mangrove sediment of the South China Sea	3
A first genomic portrait of the Florida stone crab Menippe mercenaria: Genome size, mitochondrial chromosome, and repetitive elements	2
Complete genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of Gilvimarinus sp. DA14 isolated from the South China Sea	2
The complete genome sequence of Pseudomonas chengduensis BC1815 for genome mining of PET degrading enzymes	2
Complete genome sequence of marine Roseobacter lineage member Ruegeria sp. YS9 with five plasmids isolated from red algae	2
Metagenomic profiling of host-associated bacteria from 8 datasets of the red alga Porphyra purpurea with MetaPhlAn3	2
Complete genome sequence of Streptomyces sp. HNA39, a new cyclizidine producer isolated from a South China Sea sediment	2
Editorial Board	2
Complete genome sequence of Micromonospora craniellae LHW63014T, a potential metal ion-chelating agent producer	2
Complete genome sequence of Halomonas boliviensis strain kknpp38, a chlorine-resistant bacterium isolated from the early-stage marine biofilm	2
Editorial Board	2

Shotgun metagenomic analysis of bacterial symbionts associated with “Chromodoris quadricolor” mantle	2
Transcriptome expression profiles between diploid and triploid Pacific abalone (Haliotis discus hannai) juveniles in response to acute heat-stress and hypoxia treatments	2
Complete genome sequence of a denitrifying bacterium Halomonas sp. SS10-MC5 isolated from hydrothermal vent of Indian Ocean	2
De novo assembly and annotation of the transcriptome of the endangered seagrass Zostera capensis: Insights from differential gene expression under thermal stress	2
Transcriptomic response of intertidal brittle star Ophiothrix exigua to seasonal variation	1
Complete genome sequence of Devosia beringensis S02T, a type strain with genes involved in deoxynivalenol degradation	1
Complete genome sequence of Crassaminicella sp. 143-21，isolated from a deep-sea hydrothermal vent	1
Genomic analysis of Marinomonas algicola SM1966T reveals its role in marine sulfur cycling	1
Complete genome sequence of Metabacillus sp. cB07, a bacterium inducing settlement and metamorphosis of coral larvae	1
Characterization of Chaetoceros lorenzianus-infecting DNA virus-derived promoters of genes from open reading frames of unknown function in Phaeodactylum tricornutum	1
Editorial Board	1
Complete genome of Mycolicibacterium phocaicum RL-HY01, a PAEs-degrading marine bacterial strain isolated from Zhanjiang Bay, China	1
Editorial Board	1
Complete genome analysis reveals secondary metabolite biosynthetic capabilities of Streptomyces sp. R527F isolated from the Arctic Ocean	1
Transcriptomic analysis of Nodal – and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae)	1
The complete genome sequence of Acinetobacter sp. P1332, a tetrodotoxin-producing bacteria	1
Editorial Board	1
Complete genome sequence of piezotolerant Stutzerimonas kunmingensis 7850S isolated from the sediment of the Mariana Trench	1
Genomic analysis of Pseudoalteromonas sp. M58 reveals its role in chitin biodegradation	1
Editorial Board	1
Exploring the potential of mRNA for taxonomic delineation of marine benthic eukaryotes	1
Complete genome sequence of a nitrate reducing bacteria, Algoriphagus sp. Y33 isolated from the water of the Indian Ocean	1
ROS-dependent cell death of Heterosigma akashiwo induced by algicidal bacterium Hahella sp. KA22	1
Whole-genome sequencing of Pseudomonas sp. TAE6080, a strain capable of inhibiting Staphylococcus epidermidis biofilm	1
Complete genome and carbohydrate-active enzymes of Arenibacter antarcticus KCTC 52924T isolated from deep sea sediment of Ross Sea, Antarctica	1
Metagenomic and Recombination Analyses of Antimicrobial Resistance Genes from Recreational Waters of Black Sea Coastal Areas and Other Marine Environments Unveil Extensive Evidence for Their both Intr	1
Genomic analysis of Marinomonas profundi M1K-6T reveals its adaptation to deep-sea environment of the Mariana Trench	1
Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria	1
The complete genome sequence of proteases-producing Shewanella sp. H8 isolated from Antarctica	1
Complete genome sequence of Roseivivax marinus strain TCYB24 with quorum sensing system reveal the adaptive mechanism against deep-sea hydrothermal environment	1
The complete genome sequence of the planctomycetotal bacterium Bremerella sp. P1 with abundant genes involved in polysaccharide degradation	1