Journal of Proteomics

Article	Citations
Editorial Board	47
Editorial Board	37
Proteomics reveals gender differences in physiological characteristics of the gonads and tube feet of the sea cucumber, Apostichopus japonicus	37
iTRAQ-based proteomic analysis provides novel insight into the postnatal testicular development of Hu sheep	35
Phosphorylation analysis of the Hippo-YAP pathway using Phos-tag	33
5-HT-treated mouse B cells alleviate ulcerative colitis via RIPK1: Insights from proteomic and phosphoproteomic analyses	33
Serum proteomic analysis reveals possible mechanism underlying physiological hemostasis of swim bladder	32
Proteomic profile of polar filament and polar tube from fungal pathogen microsporidium Nosema bombycis provides new insights into its unique invasion organelle	29
Comparative proteomics unveils the bacteriostatic mechanisms of Ga(III) on the regulation of metabolic pathways in Pseudomonas aeruginosa	28
The role of methyl jasmonate in enhancing biomass yields and bioactive metabolites in Stauroneis sp. (Bacillariophyceae) revealed by proteome and biochemical profiling	28
Proteomic analysis reveals the global effect of the BarA/SirA-Csr regulatory cascade in Salmonella Typhimurium grown in conditions that favor the expression of invasion genes	27
Proteomic approaches to characterize biochemistry of fresh beef color	27
Serum N-glycoproteomics characterization of differential N-glycosylation in schizophrenia	26
Disulfide bonds in the SAPA domain of the pulmonary surfactant protein B precursor	25
Untargeted metabolomics of buffalo urine reveals hydracyrlic acid, 3-bromo-1-propanol and benzyl serine as potential estrus biomarkers	24
Comparative proteome analysis of the midgut of Rhipicephalus microplus (Acari: Ixodidae) strains with contrasting resistance to ivermectin reveals the activation of proteins involved in the detoxifica	24
Profiling the neuroproteomics of honeybee brain: A clue for understanding the role of neuropeptides in the modulation of aggressivity	23
Editorial Board	22
Protein profiles from used nesting material, saliva, and urine correspond with social behavior in group housed male mice, Mus musculus	22
Editorial Board	22
Digging deeper into ancient skeletal proteomes through consecutive digestion with multiple proteases	21
Proteomic analysis reveals the non-coding small RNA Qrr5 influences autoaggregation and growth competition in Vibrio parahaemolyticus	21
Identification of novel potential interaction partners of UDP-galactose (SLC35A2), UDP-N-acetylglucosamine (SLC35A3) and an orphan (SLC35A4) nucleotide sugar transporters	21
Toxin metalloproteinases exert a dominant influence on pro-inflammatory response and anti-inflammatory regulation in jellyfish sting dermatitis	20
Antibody-free LC-HRMS/MS method for simultaneous quantification of NGAL, CRP and SAA in serum from sepsis patients	19

Proteomic profiling the molecular signatures of plectranthoic acid in prostate cancer cells	19
Corrigendum to: "Follistatin-related protein 1 interacting partner of Syndecan-1 promotes an aggressive phenotype on Oral Squamous cell carcinoma (OSCC) models" [J Proteomics. 2022 Jan 3:104474. doi:	19
SHIP1 modulation and proteome characterization of microglia	18
Complement-mediated inflammation and mitochondrial energy metabolism in the proteomic profile of myopic human corneas	18
Revealing the different resistance mechanisms of banana ‘Guijiao 9’ to Fusarium oxysporum f. sp. cubense tropical race 4 using comparative proteomic analysis	18
Identification and characterization of non-small cell lung cancer associated sialoglycoproteins	18
Proteomic and molecular analyses to understand the promotive effect of safranal on soybean growth under salt stress	18
Control of TurboID-dependent biotinylation intensity in proximity ligation screens	18
Quantitative phosphoproteome analysis of Streptomyces coelicolor by immobilized zirconium (IV) affinity chromatography and mass spectrometry reveals novel regulated protein phosphorylation sites and s	17
Towards the discovery of goat meat quality biomarkers using label-free proteomics	17
Cross and unique stress adaptation strategies of the polyextremophile Natranaerobius thermophilus to individual high salt, alkaline pH, and elevated temperature	17
Comparative proteome profiling in exosomes derived from porcine colostrum versus mature milk reveals distinct functional proteomes	17
Unraveling the proteomic landscape of red-fleshed apples to identify regulators of anthocyanin accumulation	16
Ectosomes and exosomes modulate neuronal spontaneous activity	16
The anti-oxidative potential of ginger extract and its constituent on meat protein isolate under induced Fenton oxidation	16
Corrigendum to “Immunoproteomics of cow's milk allergy in Mexican pediatric patients”	16
Identification and validation of new ERK substrates by phosphoproteomic technologies including Phos-tag SDS-PAGE	16
Corrigendum to “Age-stratified proteomic characteristics and identification of promising precise clinical treatment targets of colorectal cancer” [Journal of Proteomics 277 (2023) 104863‐104873]	16
Comparative secretome analysis of Oudemansiella raphanipes grown on different agricultural residues	15
iTRAQ-based quantitative proteomic analysis of Pelteobagrus vachelli liver in response to hypoxia	15
Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra	15
Editorial: Special issue on Phos-tag technology	15
Editorial Board	15
Congenital cataracts affect the retinal visual cycle and mitochondrial function: A multi-omics study of GJA8 knockout rabbits	15
Ubiquitylome analysis reveals the involvement of ubiquitination in the cold responses of banana seedling leaves	14
Label-free quantitative proteomics reveals the potential mechanisms of insoluble dietary fiber from okara in improving hepatic lipid metabolism of high-fat diet-induced mice	14
Editorial Board	14
Using long columns to quantify over 9200 unique protein groups from brain tissue in a single injection on an Orbitrap Exploris 480 mass spectrometer	14
4-plex quantitative glycoproteomics using glycan/protein-stable isotope labeling in cell culture	14
Analysis of protein phosphorylation sites in the hypothalamus tissues of pubescent goats	14
An optimized protocol for pig intestinal mucosa proteomics	14
Editorial Board	14
Screening by Q Exactive liquid chromatography/tandem mass spectrometry identified Choline, 25-hydroxyvitamin D2, and SM(d18:0/16:1(9Z) (OH)) as biomarkers for high-grade serous ovarian cancer	14
Editorial Board	14
Identification of novel ADAMTS1, ADAMTS4 and ADAMTS5 cleavage sites in versican using a label-free quantitative proteomics approach	13
Proteomics of wheat and barley cereals in response to environmental stresses: Current state and future challenges	13
Proteomics profiling and lysine malonylation analysis in primary Sjogren’s syndrome	13
A new method for purifying N-Glycans released from milk glycoprotein	13
Quantitative proteomic analysis for evaluating affinity isolation of extracellular vesicles	13
Getting more out of FLAG-Tag co-immunoprecipitation mass spectrometry experiments using FAIMS	13
Trypanosoma evansi secretome carries potential biomarkers for Surra diagnosis	13
Comparative physiological and proteomic response to phosphate deficiency between two wheat genotypes differing in phosphorus utilization efficiency	13
Proteomics of Sternaspis chinensis to understand phosphate biomineralization in annelids	13
The thermal proteome stability profile of Trypanosoma cruzi in epimastigote and trypomastigote life stages	12
Editorial Board	12
Editorial Board	12
Proteomic and metabolomic analyses reveal the antibacterial mechanism of Cannabidiol against gram-positive bacteria	12
Lysine 2-hydroxyisobutyrylation proteomics reveals protein modification alteration in the actin cytoskeleton pathway of oral squamous cell carcinoma	12
Bovine extracellular matrix proteins and potential role in meat quality: First in silico Bos taurus compendium	12
Comparative proteomic changes in rabbit vocal folds undergoing systemic dehydration and systemic rehydration	12

Editorial Board	12
Biochemical network analysis of protein-protein interactions to follow-up T1 bladder cancer patients	12
In vivo analysis of the phosphorylation of tau and the tau protein kinases Cdk5-p35 and GSK3β by using Phos-tag SDS–PAGE	12
Combined proteomic strategies for in-depth venomic analysis of the beaked sea snake (Hydrophis schistosus) from Songkhla Lake, Thailand	12
Urinary metabolomics reveals potential biomarkers for early detection of pregnancy in Mithun (Bos frontalis) cows	12
Effects of periodontal disease on the proteomic profile of the periodontal ligament	12
Lentiviral gene therapy with IGF2-tagged GAA normalizes the skeletal muscle proteome in murine Pompe disease	12
iTRAQ-based proteomics identifies proteins associated with betaine accumulation in Lycium barbarum L	12
Phosphorylation of Ser1452 on BRG1 inhibits the function of the SWI/SNF complex in chromatin activation	12
Comparative proteomics and phosphoproteomics analysis reveals differential sperm motility in Mediterranean buffalo semen	12
Perturbed post-translational modification (PTM) network atlas of collagen I during stent-induced neointima formation	12
Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis	12
Protein degradation patterns as biomarkers for post-mortem interval estimation: A comprehensive review of proteomic approaches in forensic science	12
Corrigendum to “Proteomic insights of chitosan mediated inhibition of Fusarium oxysporum f. sp. cucumerinum”	12
Proteomic profiling of metabolic proteins as potential biomarkers of radioresponsiveness for colorectal cancer	12
A comparative urinary proteomic and metabolomic analysis between renal aa amyloidosis and membranous nephropathy with clinicopathologic correlations	11
The proteome profiling of EVs originating from senescent cell model using quantitative proteomics and parallel reaction monitoring	11
Substrate and functional characterization of the lysine acetyltransferase MsKat and deacetylase MsCobB in Mycobacterium smegmatis	11
Proteomic alterations in Paracoccidioides brasiliensis caused by exposure to curcumin	11
Interactive effects of Pseudomonas entomophila strain 23S and Clavibacter michiganensis subsp. michiganensis on proteome and anti-Cmm compound production	11
Corrigendum to “Unbiased differential proteomic profiling between cancer-associated fibroblasts and cancer cell lines” [Journal of Proteomics (2023) Volume 288, Article number 104973]	11
Editorial Board	11
RNA-seq reveals the important role of transcriptional regulator DeoR1 in regulating Brucella abortus various pathways	11
Revealing the mechanism of fiber promoting sow embryo implantation by altering the abundance of uterine fluid proteins: A proteomic perspective	11
Screening of lung cancer serum biomarkers based on Boruta-shap and RFC-RFECV algorithms	11
Editorial Board	11
A ubiquitinome analysis to study the functional roles of the proteasome associated deubiquitinating enzymes USP14 and UCH37	11
Serum proteomics identifies biomarkers for predicting non-survivors in elderly COVID-19 patients	11
DIA proteomic and PRM validation through human granulose cells profiles screen suitable biomarkers for polycystic ovary syndrome patients	11
Discovery and validation of bladder cancer related excreted nucleosides biomarkers by dilution approach in cell culture supernatant and urine using UHPLC-MS/MS	11
Proteomics profiling of ertapenem challenged major porin deficient carbapenem-resistant Klebsiella pneumoniae	10
Integrative approaches for predicting protein network perturbations through machine learning and structural characterization	10
The diagnostic and prognostic value of SAA1 as a novel biomarker for acute aortic dissection	10
Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals	10
Comprehensive proteomics and sialiomics of the anti-proliferative activity of safranal on triple negative MDA-MB-231 breast cancer cell lines	10
Unraveling the mysteries of chicken proteomics: Insights into follicle development and reproduction	10
Integrative transcriptomic and proteomic profile revealed inhibition of oxidative phosphorylation and peroxisomes during renal interstitial fibrosis	10
Development of automated proteomic workflows utilizing silicon-based coupling agents	10
Unraveling and profiling Tityus bahiensis venom: Biochemical analyses of the major toxins	10
Proteomic profile of Cryptococcus gattii biofilm: Metabolic shift and the potential activation of electron chain transport	10
A fingerprint of plasma proteome alteration after local tissue damage induced by Bothrops leucurus snake venom in mice	10
Comprehensive proteome analysis of bread deciphering the allergenic potential of bread wheat, spelt and rye	10
Editorial Board	10
TMT-based quantitative proteomic analysis of indica rice cultivars reveals that novel components of the signaling pathways might play a role in grain length regulation	10
Integrative proteome analysis of bone marrow interstitial fluid and serum reveals candidate signature for acute myeloid leukemia	10
Proteomic profiling of plasma exosomes reveals CD82 involvement in the development of esophageal squamous cell carcinoma	10
Plasma proteomic changes in response to surgical trauma and a novel transdermal analgesic treatment in dogs	10
Immunoproteomic identification of allergenic proteins in pecan (Carya illinoinensis) pollen	10
The impact of dietary Laminaria digitata and alginate lyase supplementation on the weaned piglet liver: A comprehensive proteomics and metabolomics approach	10
Editorial Board	10
Analysis of post-translational modification dynamics unveiled novel insights into Rice responses to MSP1	9
2025: A historic moment for proteomics!	9
Proteomics analysis of the mechanism of the treatment of corneal injury in dry-eye mice	9
Proteomic interrogation of complex biomedical samples using the rapid denaturing organic digestion (DOD) method	9
B-cell-specific ablation of β-1,4-galactosyltransferase 1 prevents aging-related IgG glycans changes and improves aging phenotype in mice	9
Label-free quantitative proteomic analysis of the mechanism of salt stress promoting selenium enrichment in Lactobacillus rhamnosus	9
Physiological and proteomic dissection of the rice roots in response to iron deficiency and excess	9
Editorial Board	9
Characterization of substrate distribution and functional implication of lysine acylations in Staphylococcus aureus	9
Identification of proteins associated with treatment response of neoadjuvant chemoradiotherapy in rectal mucinous adenocarcinoma by co-expression network analysis based on proteomic analysis	9
Loggerhead sea turtle Caretta caretta plasma biochemistry and proteome profile modulation during recovery	9
Immunoproteomics of cow's milk allergy in Mexican pediatric patients	9
Proteins involved in mitochondrial metabolic functions and fertilization predominate in stallions with better motility	9
Quantitative label-free proteomic analysis of human follicle fluid to identify novel candidate protein biomarker for endometriosis-associated infertility	9
Editorial Board	9
Proteomic signatures of synergistic interactions in antimicrobials	9
Multifaceted roles of the egg perivitelline layer in avian reproduction: Functional insights from the proteomes of chicken egg inner and outer sublayers	9
Construction of a prognostic model for colon cancer by combining endoplasmic reticulum stress responsive genes	9
Proteome analysis reveals novel serum biomarkers for Henoch-Schönlein purpura in Chinese children	9
Global proteomic analyses of lysine acetylation, malonylation, succinylation, and crotonylation in human sperm reveal their involvement in male fertility	9
Protein biomarkers for root length and root dry mass on chromosomes 4A and 7A in wheat	9
Proteomics-based host-specific biomarkers for tuberculosis: The future of TB diagnosis	9
Multiomics unravels potential molecular switches in the C3 to CAM transition of Mesembryanthemum crystallinum	9
Faecal proteomics in the identification of biomarkers to differentiate canine chronic enteropathies	9
Untargeted fast proteomics analysis using UPLC-Orbitrap HRMS for halal authentication of meat and meat products	9
Editorial Board	9
Comparative proteomics analysis of samples from hepatic cystic echinococcosis patients using data-independent acquisition approach	9
Global proteome and lysine succinylation analyses provide insights into the secondary metabolism in Salvia miltiorrhiza	9
Proteomic analysis of donkey sperm reveals changes in acrosome enzymes and redox regulation during cryopreservation	9
Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor	9

Decellularized extracellular matrix from bovine ovarian tissue maintains the protein composition of the native matrisome	9
From volcanoes to the bench: Advantages of novel hyperthermoacidic archaeal proteases for proteomics workflows	8
The potential of proteomics in the study of processed meat products	8
Distribution of seven ApoC-III glycoforms in plasma, VLDL, IDL, LDL and HDL of healthy subjects	8
Proteomic profiling of membrane vesicles from Mycobacterium avium subsp. paratuberculosis: Navigating towards an in silico design of a multi-epitope vaccine targeting membrane vesicle proteins	8
Integrated tissue proteome and metabolome reveal key elements and regulatory pathways in cutaneous squamous cell carcinoma	8
In-depth proteomics and Phosphoproteomics reveal biomarkers and molecular pathways of chronic intermittent hypoxia in mice	8
Quantitative serum proteome analysis using tandem mass tags in dogs with epilepsy	8
Collecting and analysing pig mucosal scraping samples for mass spectrometry-based proteomics: A study on factors causing variation in proteomic data	8
Editorial Board	8
Proteomic changes associated with maternal dietary low ω6:ω3 ratio in piglets supplemented with seaweed. Part I: Serum proteomes	8
Editorial Board	8
Editorial Board	8
Proteomics analysis indicates the involvement of immunity and inflammation in the onset stage of SOD1-G93A mouse model of ALS	8
Journal of Proteomics – « Renaissance »!	8
To explore the regulatory role of Wnt/P53/Caspase3 signal in mouse ovarian development based on LFQ proteomics	8
Revisiting toxins with transcriptomics-informed proteomics of venom glands and crude venom from Centruroides bicolor from Panama	8
Editorial Board	8
Versatile and multiplexed mass spectrometry-based absolute quantification with cell-free-synthesized internal standard peptides	8
Label-free comparative proteomic analysis of Pleurotus eryngii grown on sawdust, bagasse, and peanut shell substrates	8
Xconnector: Retrieving and visualizing metabolites and pathways information from various database resources	8
Proteomics of plasma-derived extracellular vesicles reveals S100A8 as a novel biomarker for Alzheimer's disease: A preliminary study	8
Proteomic insights of chitosan mediated inhibition of Fusarium oxysporum f. sp. cucumerinum	8
Effects of different ratios of omega-6:omega-3 fatty acids in the diet of sows on the proteome of milk-derived extracellular vesicles	8
Dynamic urine proteome changes in a rat model of simvastatin-induced skeletal muscle injury	8
A combined proteomic and metabolomic analysis of the early aborted embryonic tissues with maternal COVID-19 infection	7
Proteomics analysis of N-methyl-d-aspartate-induced cell death in retinal and optic nerves	7
Quantitative proteomics profiling of spermatozoa and seminal plasma reveals proteins associated with semen quality in Bos indicus bulls	7
Spleen proteome profiling of dairy goats infected with C. pseudotuberculosis by TMT-based quantitative proteomics approach	7
TMT proteomics analysis of cerebrospinal fluid from patients with cerebral venous sinus thrombosis	7
Optimal conditions for carrying out trypsin digestions on complex proteomes: From bulk samples to single cells	7
Quantitative phosphoproteomic analysis of mice with liver fibrosis by DIA mass spectrometry analysis with PRM verification	7
Blood plasma proteome alteration after local tissue damage induced by Bothrops erythromelas snake venom in mice	7
Speciomics as a concept involving chemical speciation and omics	7
Proteomics analysis reveals early event molecular effectors of anti-CD19 CAR-T cell therapy in hematological cancer	7
Editorial Board	7
Proteomics reveals the role of the EamB transporter from Aeromonas hydrophila LP-2 in biofilm formation	7
Targeted proteomics using parallel reaction monitoring confirms salivary proteins indicative of metastatic triple-negative breast cancer	7
Anti-inflammatory therapeutic biomarkers identified of human bone marrow mesenchymal stem cell therapy on aging mice by serum proteomics and peptidomics study	7
Editorial Board	7
Urinary proteomics for noninvasive monitoring of biomarkers of chronic mountain sickness in a young adult population using data-independent acquisition (DIA)-based mass spectrometry	7
Deep impact of the inactivation of the SecA2-only protein export pathway on the proteosurfaceome of Listeria monocytogenes	7
Deep learning for peptide identification from metaproteomics datasets	7
Analysis of Gum proteins involved in xanthan biosynthesis throughout multiple cell fractions in a “single-tube”	7
Taxonomic identification of Morocco scorpions using MALDI-MS fingerprints of venom proteomes and computational modeling	7
DSSBU: A novel mass spectrometry-cleavable analogue of the BS3 cross-linker	7
The erythromycin polyketide compound TMC-154 stimulates ROS generation to exert antibacterial effects against Streptococcus pyogenes	7
Insights into the influence of canine breed on proteomics of the spermatozoa and seminal plasma	7
Editorial Board	7
Proteome changes during the germination and early seedling development of carnauba palm (Copernicia prunifera) under skotomorphogenic conditions	7
Proteomic identification of MHC class I-associated peptidome derived from non-obese diabetic mouse thymus and pancreas	7
Decoding the influence of semen collection processes on goat sperm quality from a perspective of seminal plasma proteomics	7
Editorial Board	7
Editorial Board	7
Curcumin prevents proteins expression changes of oxidative phosphorylation, cellular stress response, and lipid metabolism proteins in liver of mice fed a high-fructose diet	7
Proteomics reveals plasma protein SERPINH1 as a potential diagnostic biomarkers for myxomatous mitral valve disease stage B2	7
Unravelling the role of NDUFAF4 in Colon Cancer: Insights from multi-omics analysis	7
Editorial Board	7
Editorial Board	7