Journal of Proteomics

Article	Citations
Editorial Board	43
Editorial Board	37
Comparative proteomics unveils the bacteriostatic mechanisms of Ga(III) on the regulation of metabolic pathways in Pseudomonas aeruginosa	35
Proteomics reveals gender differences in physiological characteristics of the gonads and tube feet of the sea cucumber, Apostichopus japonicus	32
Proteomic analysis reveals the global effect of the BarA/SirA-Csr regulatory cascade in Salmonella Typhimurium grown in conditions that favor the expression of invasion genes	31
iTRAQ-based proteomic analysis provides novel insight into the postnatal testicular development of Hu sheep	31
5-HT-treated mouse B cells alleviate ulcerative colitis via RIPK1: Insights from proteomic and phosphoproteomic analyses	30
Untargeted metabolomics of buffalo urine reveals hydracyrlic acid, 3-bromo-1-propanol and benzyl serine as potential estrus biomarkers	30
Phosphorylation analysis of the Hippo-YAP pathway using Phos-tag	30
Profiling the neuroproteomics of honeybee brain: A clue for understanding the role of neuropeptides in the modulation of aggressivity	28
Serum proteomic analysis reveals possible mechanism underlying physiological hemostasis of swim bladder	27
Proteomic profile of polar filament and polar tube from fungal pathogen microsporidium Nosema bombycis provides new insights into its unique invasion organelle	27
Serum N-glycoproteomics characterization of differential N-glycosylation in schizophrenia	26
Disulfide bonds in the SAPA domain of the pulmonary surfactant protein B precursor	26
Proteomics study of colorectal cancer and adenomatous polyps identifies TFR1, SAHH, and HV307 as potential biomarkers for screening	25
Proteomic approaches to characterize biochemistry of fresh beef color	25
Comparative proteome analysis of the midgut of Rhipicephalus microplus (Acari: Ixodidae) strains with contrasting resistance to ivermectin reveals the activation of proteins involved in the detoxifica	25
The role of methyl jasmonate in enhancing biomass yields and bioactive metabolites in Stauroneis sp. (Bacillariophyceae) revealed by proteome and biochemical profiling	24
Control of TurboID-dependent biotinylation intensity in proximity ligation screens	24
Editorial Board	23
Protein profiles from used nesting material, saliva, and urine correspond with social behavior in group housed male mice, Mus musculus	22
Proteomic analysis reveals the non-coding small RNA Qrr5 influences autoaggregation and growth competition in Vibrio parahaemolyticus	22
Digging deeper into ancient skeletal proteomes through consecutive digestion with multiple proteases	22
Comparative proteome profiling in exosomes derived from porcine colostrum versus mature milk reveals distinct functional proteomes	21
Complement-mediated inflammation and mitochondrial energy metabolism in the proteomic profile of myopic human corneas	20

Towards the discovery of goat meat quality biomarkers using label-free proteomics	20
Proteomic and molecular analyses to understand the promotive effect of safranal on soybean growth under salt stress	19
Antibody-free LC-HRMS/MS method for simultaneous quantification of NGAL, CRP and SAA in serum from sepsis patients	19
Identification and characterization of non-small cell lung cancer associated sialoglycoproteins	19
Folylpoly-ɣ-glutamate synthetase association to the cytoskeleton: Implications to folate metabolon compartmentalization	19
Corrigendum to: "Follistatin-related protein 1 interacting partner of Syndecan-1 promotes an aggressive phenotype on Oral Squamous cell carcinoma (OSCC) models" [J Proteomics. 2022 Jan 3:104474. doi:	19
Proteomic profiling the molecular signatures of plectranthoic acid in prostate cancer cells	19
Toxin metalloproteinases exert a dominant influence on pro-inflammatory response and anti-inflammatory regulation in jellyfish sting dermatitis	18
4-plex quantitative glycoproteomics using glycan/protein-stable isotope labeling in cell culture	18
Proteomic and lipidomic analyses reveal saturated fatty acids, phosphatidylinositol, phosphatidylserine, and associated proteins contributing to intramuscular fat deposition	18
Identification of novel potential interaction partners of UDP-galactose (SLC35A2), UDP-N-acetylglucosamine (SLC35A3) and an orphan (SLC35A4) nucleotide sugar transporters	18
SHIP1 modulation and proteome characterization of microglia	18
Identification and validation of new ERK substrates by phosphoproteomic technologies including Phos-tag SDS-PAGE	18
Revealing the different resistance mechanisms of banana ‘Guijiao 9’ to Fusarium oxysporum f. sp. cubense tropical race 4 using comparative proteomic analysis	18
The anti-oxidative potential of ginger extract and its constituent on meat protein isolate under induced Fenton oxidation	18
Ubiquitylome analysis reveals the involvement of ubiquitination in the cold responses of banana seedling leaves	18
Congenital cataracts affect the retinal visual cycle and mitochondrial function: A multi-omics study of GJA8 knockout rabbits	17
Corrigendum to “Immunoproteomics of cow's milk allergy in Mexican pediatric patients”	17
Editorial: Special issue on Phos-tag technology	17
Corrigendum to “Age-stratified proteomic characteristics and identification of promising precise clinical treatment targets of colorectal cancer” [Journal of Proteomics 277 (2023) 104863‐104873]	17
iTRAQ-based quantitative proteomic analysis of Pelteobagrus vachelli liver in response to hypoxia	16
Using long columns to quantify over 9200 unique protein groups from brain tissue in a single injection on an Orbitrap Exploris 480 mass spectrometer	16
An optimized protocol for pig intestinal mucosa proteomics	16
Ectosomes and exosomes modulate neuronal spontaneous activity	16
Editorial Board	16
Peptidomic profiling of cerebrospinal fluid from patients with intracranial saccular aneurysms	16
Shotgun proteomics coupled to transient-inducible gene silencing reveal rice susceptibility genes as new sources for blast disease resistance	15
Screening by Q Exactive liquid chromatography/tandem mass spectrometry identified Choline, 25-hydroxyvitamin D2, and SM(d18:0/16:1(9Z) (OH)) as biomarkers for high-grade serous ovarian cancer	15
Editorial Board	15
Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra	15
Editorial Board	15
Quantitative phosphoproteome analysis of Streptomyces coelicolor by immobilized zirconium (IV) affinity chromatography and mass spectrometry reveals novel regulated protein phosphorylation sites and s	15
Label-free quantitative proteomics reveals the potential mechanisms of insoluble dietary fiber from okara in improving hepatic lipid metabolism of high-fat diet-induced mice	15
Proteome analysis of bermudagrass stolons and rhizomes provides new insights into the adaptation of plant stems to aboveground and underground growth	14
Editorial Board	14
Quantitative proteomic analysis for evaluating affinity isolation of extracellular vesicles	14
Getting more out of FLAG-Tag co-immunoprecipitation mass spectrometry experiments using FAIMS	14
Analysis of protein phosphorylation sites in the hypothalamus tissues of pubescent goats	14
Proteomics profiling and lysine malonylation analysis in primary Sjogren’s syndrome	14
A proteomic view of cellular responses of macrophages to copper when added as ion or as copper-polyacrylate complex	14
Leukocyte proteomics coupled with serum metabolomics identifies novel biomarkers and abnormal amino acid metabolism in Kawasaki disease	14
iTRAQ-based proteomics identifies proteins associated with betaine accumulation in Lycium barbarum L	14
Identification of novel ADAMTS1, ADAMTS4 and ADAMTS5 cleavage sites in versican using a label-free quantitative proteomics approach	13
Proteomics of Sternaspis chinensis to understand phosphate biomineralization in annelids	13
Proteomics of wheat and barley cereals in response to environmental stresses: Current state and future challenges	13
A new method for purifying N-Glycans released from milk glycoprotein	13
Comparative physiological and proteomic response to phosphate deficiency between two wheat genotypes differing in phosphorus utilization efficiency	13
Seasonally related metabolic changes and energy allocation associated with growth and reproductive phases in the liver of male goldfish (Carassius auratus)	13
Proteome remodeling in the Mycobacterium tuberculosis PknG knockout: Molecular evidence for the role of this kinase in cell envelope biogenesis and hypoxia response	12
Biochemical network analysis of protein-protein interactions to follow-up T1 bladder cancer patients	12

Comparative proteomics and phosphoproteomics analysis reveals differential sperm motility in Mediterranean buffalo semen	12
Bovine extracellular matrix proteins and potential role in meat quality: First in silico Bos taurus compendium	12
Phosphorylation of Ser1452 on BRG1 inhibits the function of the SWI/SNF complex in chromatin activation	12
In vivo analysis of the phosphorylation of tau and the tau protein kinases Cdk5-p35 and GSK3β by using Phos-tag SDS–PAGE	12
The thermal proteome stability profile of Trypanosoma cruzi in epimastigote and trypomastigote life stages	12
Editorial Board	12
Proteomic and metabolomic analyses reveal the antibacterial mechanism of Cannabidiol against gram-positive bacteria	12
Editorial Board	12
Trypanosoma evansi secretome carries potential biomarkers for Surra diagnosis	12
Protein feature analysis of heat shock induced ubiquitination sites reveals preferential modification site localization	12
Editorial Board	12
Urinary metabolomics reveals potential biomarkers for early detection of pregnancy in Mithun (Bos frontalis) cows	12
Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis	12
Lysine 2-hydroxyisobutyrylation proteomics reveals protein modification alteration in the actin cytoskeleton pathway of oral squamous cell carcinoma	12
Lentiviral gene therapy with IGF2-tagged GAA normalizes the skeletal muscle proteome in murine Pompe disease	12
Editorial Board	12
Protein degradation patterns as biomarkers for post-mortem interval estimation: A comprehensive review of proteomic approaches in forensic science	11
Combined proteomic strategies for in-depth venomic analysis of the beaked sea snake (Hydrophis schistosus) from Songkhla Lake, Thailand	11
Comprehensive proteomics and sialiomics of the anti-proliferative activity of safranal on triple negative MDA-MB-231 breast cancer cell lines	11
Substrate and functional characterization of the lysine acetyltransferase MsKat and deacetylase MsCobB in Mycobacterium smegmatis	11
Serum proteomics identifies biomarkers for predicting non-survivors in elderly COVID-19 patients	11
The proteome profiling of EVs originating from senescent cell model using quantitative proteomics and parallel reaction monitoring	11
Corrigendum to “Proteomic insights of chitosan mediated inhibition of Fusarium oxysporum f. sp. cucumerinum”	11
A proteomic analysis of urine biomarkers in autism spectrum disorder	11
Editorial Board	11
Corrigendum to “Unbiased differential proteomic profiling between cancer-associated fibroblasts and cancer cell lines” [Journal of Proteomics (2023) Volume 288, Article number 104973]	11
Interactive effects of Pseudomonas entomophila strain 23S and Clavibacter michiganensis subsp. michiganensis on proteome and anti-Cmm compound production	11
A comparative urinary proteomic and metabolomic analysis between renal aa amyloidosis and membranous nephropathy with clinicopathologic correlations	11
A ubiquitinome analysis to study the functional roles of the proteasome associated deubiquitinating enzymes USP14 and UCH37	11
Effects of periodontal disease on the proteomic profile of the periodontal ligament	11
Proteomic profiling of metabolic proteins as potential biomarkers of radioresponsiveness for colorectal cancer	11
Perturbed post-translational modification (PTM) network atlas of collagen I during stent-induced neointima formation	11
Editorial Board	11
RNA-seq reveals the important role of transcriptional regulator DeoR1 in regulating Brucella abortus various pathways	11
The impact of dietary Laminaria digitata and alginate lyase supplementation on the weaned piglet liver: A comprehensive proteomics and metabolomics approach	11
Unraveling the mysteries of chicken proteomics: Insights into follicle development and reproduction	11
Comparative proteomic changes in rabbit vocal folds undergoing systemic dehydration and systemic rehydration	11
Proteomic analysis of individual giant freshwater prawn, Macrobrachium rosenbergii, growth retardants	10
Discovery and validation of bladder cancer related excreted nucleosides biomarkers by dilution approach in cell culture supernatant and urine using UHPLC-MS/MS	10
Revealing the mechanism of fiber promoting sow embryo implantation by altering the abundance of uterine fluid proteins: A proteomic perspective	10
Editorial Board	10
Proteomic profiling of soft tissue sarcomas with SWATH mass spectrometry	10
Integrative transcriptomic and proteomic profile revealed inhibition of oxidative phosphorylation and peroxisomes during renal interstitial fibrosis	10
Proteomic alterations in Paracoccidioides brasiliensis caused by exposure to curcumin	10
Comprehensive proteome analysis of bread deciphering the allergenic potential of bread wheat, spelt and rye	10
The diagnostic and prognostic value of SAA1 as a novel biomarker for acute aortic dissection	10
Development of automated proteomic workflows utilizing silicon-based coupling agents	10
Proteomics profiling of ertapenem challenged major porin deficient carbapenem-resistant Klebsiella pneumoniae	10
Editorial Board	10
DIA proteomic and PRM validation through human granulose cells profiles screen suitable biomarkers for polycystic ovary syndrome patients	10
Screening of lung cancer serum biomarkers based on Boruta-shap and RFC-RFECV algorithms	10
Immunoproteomic identification of allergenic proteins in pecan (Carya illinoinensis) pollen	10
Editorial Board	10
Proteins involved in mitochondrial metabolic functions and fertilization predominate in stallions with better motility	10
Plasma proteomic changes in response to surgical trauma and a novel transdermal analgesic treatment in dogs	10
Quantitative label-free proteomic analysis of human follicle fluid to identify novel candidate protein biomarker for endometriosis-associated infertility	9
Proteomic characterization of the fibroin-based silk fibers produced by weaver ant Camponotus textor	9
Proteomic analysis of donkey sperm reveals changes in acrosome enzymes and redox regulation during cryopreservation	9
Decellularized extracellular matrix from bovine ovarian tissue maintains the protein composition of the native matrisome	9
Loggerhead sea turtle Caretta caretta plasma biochemistry and proteome profile modulation during recovery	9
Integrative approaches for predicting protein network perturbations through machine learning and structural characterization	9
Proteomic profile of Cryptococcus gattii biofilm: Metabolic shift and the potential activation of electron chain transport	9
Immunoproteomics of cow's milk allergy in Mexican pediatric patients	9
Multifaceted roles of the egg perivitelline layer in avian reproduction: Functional insights from the proteomes of chicken egg inner and outer sublayers	9
Protein biomarkers for root length and root dry mass on chromosomes 4A and 7A in wheat	9
Construction of a prognostic model for colon cancer by combining endoplasmic reticulum stress responsive genes	9
Characterization of substrate distribution and functional implication of lysine acylations in Staphylococcus aureus	9
Multiomics unravels potential molecular switches in the C3 to CAM transition of Mesembryanthemum crystallinum	9
2025: A historic moment for proteomics!	9
Integrative proteome analysis of bone marrow interstitial fluid and serum reveals candidate signature for acute myeloid leukemia	9
Proteomic profiling of plasma exosomes reveals CD82 involvement in the development of esophageal squamous cell carcinoma	9
Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals	9
Comparative proteomics analysis of samples from hepatic cystic echinococcosis patients using data-independent acquisition approach	9
Proteomics analysis of the mechanism of the treatment of corneal injury in dry-eye mice	9
Global proteomic analyses of lysine acetylation, malonylation, succinylation, and crotonylation in human sperm reveal their involvement in male fertility	9
Ancient enamel peptides recovered from the South American Pleistocene species Notiomastodon platensis and Myocastor cf. coypus	9
Identification of proteins associated with treatment response of neoadjuvant chemoradiotherapy in rectal mucinous adenocarcinoma by co-expression network analysis based on proteomic analysis	9
Unraveling and profiling Tityus bahiensis venom: Biochemical analyses of the major toxins	9
TMT-based quantitative proteomic analysis of indica rice cultivars reveals that novel components of the signaling pathways might play a role in grain length regulation	9
A fingerprint of plasma proteome alteration after local tissue damage induced by Bothrops leucurus snake venom in mice	9

Analysis of post-translational modification dynamics unveiled novel insights into Rice responses to MSP1	9
Faecal proteomics in the identification of biomarkers to differentiate canine chronic enteropathies	8
Proteomic changes associated with maternal dietary low ω6:ω3 ratio in piglets supplemented with seaweed. Part I: Serum proteomes	8
Identification of cellular proteins interacting with PEDV M protein through APEX2 labeling	8
Label-free quantitative proteomic analysis of the mechanism of salt stress promoting selenium enrichment in Lactobacillus rhamnosus	8
Editorial Board	8
Label-free comparative proteomic analysis of Pleurotus eryngii grown on sawdust, bagasse, and peanut shell substrates	8
Editorial Board	8
Proteome analysis reveals novel serum biomarkers for Henoch-Schönlein purpura in Chinese children	8
Proteomics-based host-specific biomarkers for tuberculosis: The future of TB diagnosis	8
Distribution of seven ApoC-III glycoforms in plasma, VLDL, IDL, LDL and HDL of healthy subjects	8
B-cell-specific ablation of β-1,4-galactosyltransferase 1 prevents aging-related IgG glycans changes and improves aging phenotype in mice	8
Revisiting toxins with transcriptomics-informed proteomics of venom glands and crude venom from Centruroides bicolor from Panama	8
From volcanoes to the bench: Advantages of novel hyperthermoacidic archaeal proteases for proteomics workflows	8
Untargeted fast proteomics analysis using UPLC-Orbitrap HRMS for halal authentication of meat and meat products	8
Global proteome and lysine succinylation analyses provide insights into the secondary metabolism in Salvia miltiorrhiza	8
Physiological and proteomic dissection of the rice roots in response to iron deficiency and excess	8
Proteomic interrogation of complex biomedical samples using the rapid denaturing organic digestion (DOD) method	8
Versatile and multiplexed mass spectrometry-based absolute quantification with cell-free-synthesized internal standard peptides	8
Proteomic signatures of synergistic interactions in antimicrobials	8
Editorial Board	8
The potential of proteomics in the study of processed meat products	8
Editorial Board	8
Proteomics reveals plasma protein SERPINH1 as a potential diagnostic biomarkers for myxomatous mitral valve disease stage B2	7
Proteomic insights of chitosan mediated inhibition of Fusarium oxysporum f. sp. cucumerinum	7
Journal of Proteomics – « Renaissance »!	7
Proteomics analysis indicates the involvement of immunity and inflammation in the onset stage of SOD1-G93A mouse model of ALS	7
DSSBU: A novel mass spectrometry-cleavable analogue of the BS3 cross-linker	7
Quantitative serum proteome analysis using tandem mass tags in dogs with epilepsy	7
Encrypted antimicrobial peptides from proteins present in the plasma of the millipede Rhinocricus sp.	7
Editorial Board	7
Proteome changes during the germination and early seedling development of carnauba palm (Copernicia prunifera) under skotomorphogenic conditions	7
Editorial Board	7
Unravelling the role of NDUFAF4 in Colon Cancer: Insights from multi-omics analysis	7
Editorial Board	7
Deep learning for peptide identification from metaproteomics datasets	7
Quantitative phosphoproteomic analysis of mice with liver fibrosis by DIA mass spectrometry analysis with PRM verification	7
Xconnector: Retrieving and visualizing metabolites and pathways information from various database resources	7
Changes in the transcript and protein profiles of Quercus ilex seedlings in response to drought stress	7
Integrated tissue proteome and metabolome reveal key elements and regulatory pathways in cutaneous squamous cell carcinoma	7
Insights into the influence of canine breed on proteomics of the spermatozoa and seminal plasma	7
Quantitative proteomics profiling of spermatozoa and seminal plasma reveals proteins associated with semen quality in Bos indicus bulls	7
Editorial Board	7
Proteomics of plasma-derived extracellular vesicles reveals S100A8 as a novel biomarker for Alzheimer's disease: A preliminary study	7
Editorial Board	7
Proteomic profiling of membrane vesicles from Mycobacterium avium subsp. paratuberculosis: Navigating towards an in silico design of a multi-epitope vaccine targeting membrane vesicle proteins	7
To explore the regulatory role of Wnt/P53/Caspase3 signal in mouse ovarian development based on LFQ proteomics	7
Proteomic analysis of Caenorhabditis elegans wound model reveals novel molecular players involved in repair	7
Editorial Board	7
Analysis of Gum proteins involved in xanthan biosynthesis throughout multiple cell fractions in a “single-tube”	7
Speciomics as a concept involving chemical speciation and omics	7
A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen	7
The erythromycin polyketide compound TMC-154 stimulates ROS generation to exert antibacterial effects against Streptococcus pyogenes	7
Anti-inflammatory therapeutic biomarkers identified of human bone marrow mesenchymal stem cell therapy on aging mice by serum proteomics and peptidomics study	7
Targeted proteomics using parallel reaction monitoring confirms salivary proteins indicative of metastatic triple-negative breast cancer	7
Effects of different ratios of omega-6:omega-3 fatty acids in the diet of sows on the proteome of milk-derived extracellular vesicles	7
In-depth proteomics and Phosphoproteomics reveal biomarkers and molecular pathways of chronic intermittent hypoxia in mice	7
Editorial Board	7
Dynamic urine proteome changes in a rat model of simvastatin-induced skeletal muscle injury	7
Proteomics analysis of N-methyl-d-aspartate-induced cell death in retinal and optic nerves	7
A combined proteomic and metabolomic analysis of the early aborted embryonic tissues with maternal COVID-19 infection	7
Editorial Board	7
Targeted mass spectrometry quantification of total soy protein residues from commercially processed ingredients for food allergen management	7
Editorial Board	7