Journal of Proteomics

Article	Citations
Editorial Board	56
Proteomic approaches to characterize biochemistry of fresh beef color	46
Editorial Board	46
Editorial Board	37
Serum proteomic analysis reveals possible mechanism underlying physiological hemostasis of swim bladder	36
iTRAQ-based proteomic analysis provides novel insight into the postnatal testicular development of Hu sheep	33
Disulfide bonds in the SAPA domain of the pulmonary surfactant protein B precursor	27
Combining information on degradomics and gene expression data in prospecting metastatic melanoma proteolytic signatures	27
The dynamics of ubiquitination and its role within the proteome of extracellular vesicles	26
Mining foreign proteins in honey by shotgun label-free proteomics: Implications for quality and authenticity	26
Serum N-glycoproteomics characterization of differential N-glycosylation in schizophrenia	26
Profiling the neuroproteomics of honeybee brain: A clue for understanding the role of neuropeptides in the modulation of aggressivity	25
Untargeted metabolomics of buffalo urine reveals hydracyrlic acid, 3-bromo-1-propanol and benzyl serine as potential estrus biomarkers	24
5-HT-treated mouse B cells alleviate ulcerative colitis via RIPK1: Insights from proteomic and phosphoproteomic analyses	22
Proteomic analysis reveals the global effect of the BarA/SirA-Csr regulatory cascade in Salmonella Typhimurium grown in conditions that favor the expression of invasion genes	22
Comparative proteomics unveils the bacteriostatic mechanisms of Ga(III) on the regulation of metabolic pathways in Pseudomonas aeruginosa	22
Digging deeper into ancient skeletal proteomes through consecutive digestion with multiple proteases	21
Opt-TMT: An optimized and scaled-down TMT labeling strategy for limited sample	21
Systematic comparison of the effects of various fixatives on the stability of the cellular proteome	20
Anisomelic acid promotes proteasomal degradation of HPV16 E6 via E3 ligase recruitment: A mass spectrometry-based interactome study	20
Toxin metalloproteinases exert a dominant influence on pro-inflammatory response and anti-inflammatory regulation in jellyfish sting dermatitis	20
Proteomic analysis reveals the non-coding small RNA Qrr5 influences autoaggregation and growth competition in Vibrio parahaemolyticus	20
Proteomic and molecular analyses to understand the promotive effect of safranal on soybean growth under salt stress	19
Control of TurboID-dependent biotinylation intensity in proximity ligation screens	19
Editorial Board	19

Editorial Board	19
Complement-mediated inflammation and mitochondrial energy metabolism in the proteomic profile of myopic human corneas	18
SHIP1 modulation and proteome characterization of microglia	18
Protein profiles from used nesting material, saliva, and urine correspond with social behavior in group housed male mice, Mus musculus	18
Antibody-free LC-HRMS/MS method for simultaneous quantification of NGAL, CRP and SAA in serum from sepsis patients	18
Growth mode-dependent proteomic responses of Bacillus subtilis to cerium oxide nanoparticles: Pellicle biofilm versus swarming	17
Cross and unique stress adaptation strategies of the polyextremophile Natranaerobius thermophilus to individual high salt, alkaline pH, and elevated temperature	17
4-plex quantitative glycoproteomics using glycan/protein-stable isotope labeling in cell culture	17
Revealing the different resistance mechanisms of banana ‘Guijiao 9’ to Fusarium oxysporum f. sp. cubense tropical race 4 using comparative proteomic analysis	17
Standardizing tear proteomics preanalytics: Capillary vs Schirmer sampling and denaturing vs mild elution buffers shape proteome depth and abundance profiles	17
A fast TMT-based proteomic workflow reveals neural enrichment in neurospheres of hiPSC-derived neural stem cells	17
Towards the discovery of goat meat quality biomarkers using label-free proteomics	17
First insight into the regulatory role of the glycoprotein hormones GPA2 and GPB5 in the small-spotted catshark (Scyliorhinus canicula L.) during spermiogenesis.	16
Congenital cataracts affect the retinal visual cycle and mitochondrial function: A multi-omics study of GJA8 knockout rabbits	16
Ubiquitylome analysis reveals the involvement of ubiquitination in the cold responses of banana seedling leaves	16
An optimized protocol for pig intestinal mucosa proteomics	16
Corrigendum to ‘DSSBU: A novel mass spectrometry-cleavable analogue of the BS3 cross-linker’ [Journal of Proteomics 310 (2025) 105330]	16
A perspective on integrating digital pathology, proteomics, clinical data and AI analytics in cancer research	16
Proteomics-driven innovations in plant-based foods: Current advances, emerging technologies, and future perspectives	15
Quantitative phosphoproteome analysis of Streptomyces coelicolor by immobilized zirconium (IV) affinity chromatography and mass spectrometry reveals novel regulated protein phosphorylation sites and s	15
Unraveling the proteomic landscape of red-fleshed apples to identify regulators of anthocyanin accumulation	15
Editorial Board	15
Corrigendum to “Immunoproteomics of cow's milk allergy in Mexican pediatric patients”	15
Using long columns to quantify over 9200 unique protein groups from brain tissue in a single injection on an Orbitrap Exploris 480 mass spectrometer	15
Editorial Board	15
Corrigendum to “Age-stratified proteomic characteristics and identification of promising precise clinical treatment targets of colorectal cancer” [Journal of Proteomics 277 (2023) 104863‐104873]	15
Ectosomes and exosomes modulate neuronal spontaneous activity	15
Screening by Q Exactive liquid chromatography/tandem mass spectrometry identified Choline, 25-hydroxyvitamin D2, and SM(d18:0/16:1(9Z) (OH)) as biomarkers for high-grade serous ovarian cancer	14
Editorial Board	14
The anti-oxidative potential of ginger extract and its constituent on meat protein isolate under induced Fenton oxidation	14
Label-free quantitative proteomics reveals the potential mechanisms of insoluble dietary fiber from okara in improving hepatic lipid metabolism of high-fat diet-induced mice	14
Editorial Board	14
The untapped potential of metaproteomics in microbial systems ecology	14
Comparative secretome analysis of Oudemansiella raphanipes grown on different agricultural residues	14
Sputum proteomics and phosphoproteomics for improving chronic obstructive pulmonary disease knowledge	13
Potential protein biomarkers for heat tolerance in wheat at seedling and ear peep stages	13
iTRAQ-based proteomics identifies proteins associated with betaine accumulation in Lycium barbarum L	13
Proteomics of wheat and barley cereals in response to environmental stresses: Current state and future challenges	13
Trypanosoma evansi secretome carries potential biomarkers for Surra diagnosis	13
Proteomics profiling and lysine malonylation analysis in primary Sjogren’s syndrome	13
Proteome dynamics of chilli pepper fruits during development and ripening from two Mexican cultivars of Capsicum annuum L	13
Proteomics of Sternaspis chinensis to understand phosphate biomineralization in annelids	13
Prospective serial proteomic analysis uncovers mechanistic pathways of chemotherapy resistance in advanced non-small cell lung cancer	12
Editorial Board	12
Comparative physiological and proteomic response to phosphate deficiency between two wheat genotypes differing in phosphorus utilization efficiency	12
Comparative proteomic changes in rabbit vocal folds undergoing systemic dehydration and systemic rehydration	12
Editorial Board	12
Ablation of ACSS2 drives alteration to cardiac and hepatic proteomic landscapes in a tissue- and sex-specific manner	12
Editorial Board	12
Integrated analysis of the transcriptome and proteome reveals that ABI3BP is involved in the pathogenesis of osteoarthritis	12

Lentiviral gene therapy with IGF2-tagged GAA normalizes the skeletal muscle proteome in murine Pompe disease	12
Comparative proteomics and phosphoproteomics analysis reveals differential sperm motility in Mediterranean buffalo semen	12
Urinary metabolomics reveals potential biomarkers for early detection of pregnancy in Mithun (Bos frontalis) cows	12
Biochemical network analysis of protein-protein interactions to follow-up T1 bladder cancer patients	12
Functional and protein interaction analysis of Nop7 in trypanosomatid parasites	11
Proteomic and metabolomic analyses reveal the antibacterial mechanism of Cannabidiol against gram-positive bacteria	11
SequenceAssembler: A tool for protein sequence assembly from mass spectrometry data	11
Serum proteomics identifies biomarkers for predicting non-survivors in elderly COVID-19 patients	11
Protein degradation patterns as biomarkers for post-mortem interval estimation: A comprehensive review of proteomic approaches in forensic science	11
DIA proteomic and PRM validation through human granulose cells profiles screen suitable biomarkers for polycystic ovary syndrome patients	11
Discovery and validation of bladder cancer related excreted nucleosides biomarkers by dilution approach in cell culture supernatant and urine using UHPLC-MS/MS	11
Corrigendum to “Unbiased differential proteomic profiling between cancer-associated fibroblasts and cancer cell lines” [Journal of Proteomics (2023) Volume 288, Article number 104973]	11
Transmutation learning: Breaking the reference database barrier to unlock single-cell proteomics	11
Perturbed post-translational modification (PTM) network atlas of collagen I during stent-induced neointima formation	11
Revealing the mechanism of fiber promoting sow embryo implantation by altering the abundance of uterine fluid proteins: A proteomic perspective	11
Effects of periodontal disease on the proteomic profile of the periodontal ligament	11
Bovine extracellular matrix proteins and potential role in meat quality: First in silico Bos taurus compendium	11
Unraveling the mysteries of chicken proteomics: Insights into follicle development and reproduction	10
Proteomic alterations in Paracoccidioides brasiliensis caused by exposure to curcumin	10
Substrate and functional characterization of the lysine acetyltransferase MsKat and deacetylase MsCobB in Mycobacterium smegmatis	10
RNA-seq reveals the important role of transcriptional regulator DeoR1 in regulating Brucella abortus various pathways	10
Integrative proteome analysis of bone marrow interstitial fluid and serum reveals candidate signature for acute myeloid leukemia	10
Editorial Board	10
The impact of dietary Laminaria digitata and alginate lyase supplementation on the weaned piglet liver: A comprehensive proteomics and metabolomics approach	10
Editorial Board	10
Screening of lung cancer serum biomarkers based on Boruta-shap and RFC-RFECV algorithms	10
Proteoformics: Current status and future perspectives	10
Proteomic profile of Cryptococcus gattii biofilm: Metabolic shift and the potential activation of electron chain transport	10
Integration of proteomic and transcriptomic data of the venom and venom gland from Tityus jaimei	10
A comparative urinary proteomic and metabolomic analysis between renal aa amyloidosis and membranous nephropathy with clinicopathologic correlations	10
The proteome profiling of EVs originating from senescent cell model using quantitative proteomics and parallel reaction monitoring	10
Interactive effects of Pseudomonas entomophila strain 23S and Clavibacter michiganensis subsp. michiganensis on proteome and anti-Cmm compound production	10
Integrated salivary proteomic and metabolomic analyses reveal molecular characterization and novel biomarker panels of chronic obstructive pulmonary disease	10
Machine learning-enhanced plasma proteomics discriminates pancreatic cancer-associated diabetes from type 2 diabetes mellitus	10
Development of automated proteomic workflows utilizing silicon-based coupling agents	10
TMT-based quantitative proteomic analysis of indica rice cultivars reveals that novel components of the signaling pathways might play a role in grain length regulation	9
Proteomics of the extremotolerant yeast Meyerozyma guilliermondii 4LYP0 isolated from the Yanamate tailings Cerro de Pasco (Peru) upon exposure to Cu 9
Proteomics-based host-specific biomarkers for tuberculosis: The future of TB diagnosis	9
Decellularized extracellular matrix from bovine ovarian tissue maintains the protein composition of the native matrisome	9
Integrative transcriptomic and proteomic profile revealed inhibition of oxidative phosphorylation and peroxisomes during renal interstitial fibrosis	9
The diagnostic and prognostic value of SAA1 as a novel biomarker for acute aortic dissection	9
Integrative approaches for predicting protein network perturbations through machine learning and structural characterization	9
Protein biomarkers for root length and root dry mass on chromosomes 4A and 7A in wheat	9
Multiomics unravels potential molecular switches in the C3 to CAM transition of Mesembryanthemum crystallinum	9
Proteomic analysis of donkey sperm reveals changes in acrosome enzymes and redox regulation during cryopreservation	9
Comparative proteomics analysis of samples from hepatic cystic echinococcosis patients using data-independent acquisition approach	9
Editorial Board	9
Unraveling and profiling Tityus bahiensis venom: Biochemical analyses of the major toxins	9
Editorial Board	9
2025: A historic moment for proteomics!	9
Global proteome and lysine succinylation analyses provide insights into the secondary metabolism in Salvia miltiorrhiza	9
Analysis of post-translational modification dynamics unveiled novel insights into Rice responses to MSP1	9
Proteomics profiling of ertapenem challenged major porin deficient carbapenem-resistant Klebsiella pneumoniae	9
Proteomic profiling of plasma exosomes reveals CD82 involvement in the development of esophageal squamous cell carcinoma	9
Plasma proteomic changes in response to surgical trauma and a novel transdermal analgesic treatment in dogs	9
Global proteomic analyses of lysine acetylation, malonylation, succinylation, and crotonylation in human sperm reveal their involvement in male fertility	8
Label-free proteomics revealed drought stress tolerance mechanisms in the sugar beet monosomic addition line M14	8
Cosine similarity analysis of venom proteomes of Indian cobras, Naja naja and Naja kaouthia reveals significant interspecies and geographic variations	8
Collecting and analysing pig mucosal scraping samples for mass spectrometry-based proteomics: A study on factors causing variation in proteomic data	8
Quantitative label-free proteomic analysis of human follicle fluid to identify novel candidate protein biomarker for endometriosis-associated infertility	8
Proteomics analysis of the mechanism of the treatment of corneal injury in dry-eye mice	8
Proteome analysis reveals novel serum biomarkers for Henoch-Schönlein purpura in Chinese children	8
Editorial Board	8
Immunoproteomics of cow's milk allergy in Mexican pediatric patients	8
Construction of a prognostic model for colon cancer by combining endoplasmic reticulum stress responsive genes	8
Characterization of substrate distribution and functional implication of lysine acylations in Staphylococcus aureus	8
Physiological and proteomic dissection of the rice roots in response to iron deficiency and excess	8
Editorial Board	8
Violacein as a multitarget agent in bladder cancer cells	7
Editorial Board	7
A combined proteomic and metabolomic analysis of the early aborted embryonic tissues with maternal COVID-19 infection	7
Editorial Board	7
JAM-A as a potential surface marker of human pluripotent stem cells	7
Potential kidney biomarkers in urinary extracellular vesicles from end stage renal disease and post-transplant patients	7
The in vitro effect of omentin-1 on the global proteome of granulosa cells from normal weight Large White and fat Meishan pigs	7
Label-free quantitative proteomic analysis of the mechanism of salt stress promoting selenium enrichment in Lactobacillus rhamnosus	7
Proteomic signatures of synergistic interactions in antimicrobials	7
Editorial Board	7
Proteomics analysis indicates the involvement of immunity and inflammation in the onset stage of SOD1-G93A mouse model of ALS	7
Antiobesogenic effect of hydrolysates and peptide fractions of porcine collagen after in vitro gastrointestinal digestion	7

Proteomics reveals the role of the EamB transporter from Aeromonas hydrophila LP-2 in biofilm formation	7
Quantitative serum proteome analysis using tandem mass tags in dogs with epilepsy	7
E cadherin appears to be an essential on/off switch for initiating bile canaliculi formation	7
Unraveling the mechanism of peptidases participation in the protein digestion of the whiteleg shrimp (Litopenaeus vannamei)	7
B-cell-specific ablation of β-1,4-galactosyltransferase 1 prevents aging-related IgG glycans changes and improves aging phenotype in mice	7
Proteomic changes associated with maternal dietary low ω6:ω3 ratio in piglets supplemented with seaweed. Part I: Serum proteomes	7
Untargeted fast proteomics analysis using UPLC-Orbitrap HRMS for halal authentication of meat and meat products	7
Proteomic profiling of membrane vesicles from Mycobacterium avium subsp. paratuberculosis: Navigating towards an in silico design of a multi-epitope vaccine targeting membrane vesicle proteins	7
The potential of proteomics in the study of processed meat products	7
Proteomics of plasma-derived extracellular vesicles reveals S100A8 as a novel biomarker for Alzheimer's disease: A preliminary study	7
Journal of Proteomics – « Renaissance »!	7
Proteomic signatures in triple-negative breast cancer	7
Targeted proteomics using parallel reaction monitoring confirms salivary proteins indicative of metastatic triple-negative breast cancer	7
Two-dimensional electrophoresis-based proteomics reveals soybean seed hypocotyl proteoforms	7
Label-free comparative proteomic analysis of Pleurotus eryngii grown on sawdust, bagasse, and peanut shell substrates	7
Revisiting toxins with transcriptomics-informed proteomics of venom glands and crude venom from Centruroides bicolor from Panama	7
Proteomic interrogation of complex biomedical samples using the rapid denaturing organic digestion (DOD) method	7
From volcanoes to the bench: Advantages of novel hyperthermoacidic archaeal proteases for proteomics workflows	7
Editorial Board	7
Proteomic comparison of human brain tissue preservation methods	7
To explore the regulatory role of Wnt/P53/Caspase3 signal in mouse ovarian development based on LFQ proteomics	7
Quantitative proteomics profiling of spermatozoa and seminal plasma reveals proteins associated with semen quality in Bos indicus bulls	7