Clinical Epigenetics

Article	Citations
Psychostimulant-induced aberrant DNA methylation in an in vitro model of human peripheral blood mononuclear cells	147
Integrative genomics analysis of nasal intestinal-type adenocarcinomas demonstrates the major role of CACNA1C and paves the way for a simple diagnostic tool in male woodworkers	141
DNA methylation patterns associated with konzo in Sub-Saharan Africa	115
Disrupted methylation patterns at birth persist in early childhood: a prospective cohort analysis	92
Novel genetic variants of KHDC3L and other members of the subcortical maternal complex associated with Beckwith–Wiedemann syndrome or Pseudohypoparathyroidism 1B and multi-locus imprinting disturbance	84
Technical considerations in PCR-based assay design for diagnostic DNA methylation cancer biomarkers	74
Longitudinal monitoring of cell-free DNA methylation in ALK-positive non-small cell lung cancer patients	65
Assessment of differentially methylated loci in individuals with end-stage kidney disease attributed to diabetic kidney disease: an exploratory study	60
Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance	57
Novel epigenetic network biomarkers for early detection of esophageal cancer	55
Whole blood methylome-derived features to discriminate endocrine hypertension	53
Defining post-acute COVID-19 syndrome (PACS) by an epigenetic biosignature in peripheral blood mononuclear cells	51
Validating biomarkers and models for epigenetic inference of alcohol consumption from blood	51
Cross talk between acetylation and methylation regulators reveals histone modifier expression patterns posing prognostic and therapeutic implications on patients with colon cancer	49
Multi-omic alterations of the SWI/SNF complex define a clinical subgroup in lung adenocarcinoma	48
An epigenome-wide study of DNA methylation profiles and lung function among American Indians in the Strong Heart Study	45
Epigenetic adaptations of the masticatory mucosa to periodontal inflammation	44
Aberrant epigenetic and transcriptional events associated with breast cancer risk	42
DNA methyltransferase inhibitors combination therapy for the treatment of solid tumor: mechanism and clinical application	42
Repression of the PRELP gene is relieved by histone deacetylase inhibitors through acetylation of histone H2B lysine 5 in bladder cancer	42
Genome-wide promoter methylation profiling in a cellular model of melanoma progression reveals markers of malignancy and metastasis that predict melanoma survival	41
Epigenome-wide DNA methylation profiling of conditioned pain modulation in individuals with non-specific chronic low back pain	39
Genome-wide distribution of histone trimethylation reveals a global impact of bisphenol A on telomeric binding proteins and histone acetyltransferase factors: a pilot study with human and in vitro dat	38
Liquid biopsies based on DNA methylation as biomarkers for the detection and prognosis of lung cancer	37
Methylated circulating tumor DNA as a biomarker for colorectal cancer diagnosis, prognosis, and prediction	35

Plasma lipid profiles in early adulthood are associated with epigenetic aging in the Coronary Artery Risk Development in Young Adults (CARDIA) Study	35
Epigenetics of single-site and multi-site atherosclerosis in African Americans from the Genetic Epidemiology Network of Arteriopathy (GENOA)	33
Maternal epigenetic clocks measured during pregnancy do not predict gestational age at delivery or offspring birth outcomes: a replication study in metropolitan Cebu, Philippines	32
Predicting disease-free survival in colorectal cancer by circulating tumor DNA methylation markers	32
Fetal exposure to phthalates and bisphenols and DNA methylation at birth: the Generation R Study	32
Circulating cell-free DNA methylation mirrors alterations in cerebral patterns in epilepsy	31
First step towards a consensus strategy for multi-locus diagnostic testing of imprinting disorders	31
Epigenome-wide contributions to individual differences in childhood phenotypes: a GREML approach	30
Genome‑wide profiling of DNA methylation and gene expression unravel the epigenetic landscape in diabetes-related hypothyroidism	30
Epigenome-wide association studies: current knowledge, strategies and recommendations	30
High-resolution targeted bisulfite sequencing reveals blood cell type-specific DNA methylation patterns in IL13 and ORMDL3	30
Evaluation of global and intragenic hypomethylation in colorectal adenomas improves patient stratification and colorectal cancer risk prediction	29
Development of a prognostic risk model for clear cell renal cell carcinoma by systematic evaluation of DNA methylation markers	29
Maternal–fetal stress and DNA methylation signatures in neonatal saliva: an epigenome-wide association study	29
Dynamic patterns of blood lipids and DNA methylation in response to statin therapy	28
Epigenome-wide association study of lung function in Latino children and youth with asthma	28
Reproductive history and blood cell DNA methylation later in life: the Young Finns Study	28
Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD	27
Differential DNA methylation by early versus late parenteral nutrition in the PICU: a biological basis for its impact on emotional and behavioral problems documented 4 years later	26
The ENmix DNA methylation analysis pipeline for Illumina BeadChip and comparisons with seven other preprocessing pipelines	26
Epigenetic quantification of circulating immune cells in peripheral blood of triple-negative breast cancer patients	26
The epigenetic etiology of cardiovascular disease in a longitudinal Swedish twin study	25
Association of nutritional glycaemic indices with global DNA methylation patterns: results from the Moli-sani cohort	25
Altered DNA methylation in estrogen-responsive repetitive sequences of spermatozoa of infertile men with shortened anogenital distance	25
Integrated 5-hydroxymethylcytosine and fragmentation signatures as enhanced biomarkers in lung cancer	25
Epigenetics of early-life adversity in youth: cross-sectional and longitudinal associations	25
Aberrant DNA hydroxymethylation reshapes transcription factor binding in myeloid neoplasms	25
The emerging role of epigenetic regulation in the progression of silicosis	24
Therapeutic potential of inhibiting histone 3 lysine 27 demethylases: a review of the literature	24
DNA methylation patterns at and beyond the histological margin of early-stage invasive lung adenocarcinoma radiologically manifested as pure ground-glass opacity	24
Epigenetics of type 2 diabetes and diabetes-related outcomes in the Strong Heart Study	24
Investigating pathological epigenetic aberrations by epi-proteomics	24
High performance methylated DNA markers for detection of colon adenocarcinoma	24
OXTR DNA methylation differentiates men on the obesity spectrum with and without binge eating disorder	24
JIB-04, a histone demethylase Jumonji C domain inhibitor, regulates phenotypic switching of vascular smooth muscle cells	23
Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics	23
Correction to: ZMYND10, an epigenetically regulated tumor suppressor, exerts tumor-suppressive functions via miR145-5p/NEDD9 axis in breast cancer	23
A randomized, phase II trial of oral azacitidine (CC-486) in patients with resected pancreatic adenocarcinoma at high risk for recurrence	23
Identification of differentially methylated regions in rare diseases from a single-patient perspective	23
Impact of BMI and waist circumference on epigenome-wide DNA methylation and identification of epigenetic biomarkers in blood: an EWAS in multi-ethnic Asian individuals	22
Why epigenetics is (not) a biosocial science and why that matters	22
Effects of stressful life-events on DNA methylation in panic disorder and major depressive disorder	22
Decreased mitochondrial D-loop region methylation mediates an increase in mitochondrial DNA copy number in CADASIL	22
High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments	22
Lifetime exposure to smoking, epigenetic aging, and morbidity and mortality in older adults	21
The role of epigenetic modifications for the pathogenesis of Crohn's disease	21
Epigenetic targeting of the ACE2 and NRP1 viral receptors limits SARS-CoV-2 infectivity	21
Pre-implantation alcohol exposure induces lasting sex-specific DNA methylation programming errors in the developing forebrain	21
Distinguishable DNA methylation defines disease susceptibility influenced by race and ethnicity	21
Translation of a tissue epigenetic signature to circulating free DNA suggests BCAT1 as a potential noninvasive diagnostic biomarker for lung cancer	20

Promoter methylation-mediated repression of UNC5 receptors and the associated clinical significance in human colorectal cancer	20
Guidelines for pre-analytical conditions for assessing the methylation of circulating cell-free DNA	20
Accurate prediction of acute pancreatitis severity based on genome-wide cell free DNA methylation profiles	20
DNA methylation profiling for molecular classification of adult diffuse lower-grade gliomas	20
DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker	20
Integrated multi-omics analyses reveal that BCAM is associated with epigenetic modification and tumor microenvironment subtypes of clear cell renal cell carcinoma	19
The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes	19
SETD2-mediated epigenetic regulation of noncanonical Wnt5A during osteoclastogenesis	19
Pembrolizumab plus azacitidine in patients with chemotherapy refractory metastatic colorectal cancer: a single-arm phase 2 trial and correlative biomarker analysis	19
Interplay of Val66Met and BDNF methylation: effect on reward learning and cognitive performance in major depression	19
Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy	19
Epigenome-wide epidemiologic studies of human immunodeficiency virus infection, treatment, and disease progression	19
Patients with PWS and related syndromes display differentially methylated regions involved in neurodevelopmental and nutritional trajectory	18
DNA methylation-based profiling reveals distinct clusters with survival heterogeneity in high-grade serous ovarian cancer	18
SEEMLIS: a flexible semi-automated method for enrichment of methylated DNA from low-input samples	18
Serum level of total histone 3, H3K4me3, and H3K27ac after non-emergent cardiac surgery suggests the persistence of smoldering inflammation at 3 months in an adult population	18
Cell-free DNA 5-hydroxymethylcytosine profiles of long non-coding RNA genes enable early detection and progression monitoring of human cancers	18
Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing	18
Diagnosis of pulmonary nodules by DNA methylation analysis in bronchoalveolar lavage fluids	18
Weight loss after Roux-En-Y gastric bypass surgery reveals skeletal muscle DNA methylation changes	17
Androgen receptor reprogramming demarcates prognostic, context-dependent gene sets in primary and metastatic prostate cancer	17
NAA60 (HAT4): the newly discovered bi-functional Golgi member of the acetyltransferase family	17
DNA methylome profiling reveals epigenetic regulation of lipoprotein-associated phospholipase A2 in human vulnerable atherosclerotic plaque	17
Integrated single-cell RNA-seq and DNA methylation reveal the effects of air pollution in patients with recurrent spontaneous abortion	16
The spectrum of tuberculosis described as differential DNA methylation patterns in alveolar macrophages and alveolar T cells	16
Prenatal risk factors and neonatal DNA methylation in very preterm infants	16
Association of prenatal alcohol exposure with offspring DNA methylation in mammals: a systematic review of the evidence	16
Characterising sex differences of autosomal DNA methylation in whole blood using the Illumina EPIC array	16
Maintenance of methylation profile in imprinting control regions in human induced pluripotent stem cells	16
Cell-type heterogeneity: Why we should adjust for it in epigenome and biomarker studies	16
Genome wide DNA methylation analysis of alveolar capillary dysplasia lung tissue reveals aberrant methylation of genes involved in development including the FOXF1 locus	16
Chromatin accessibility changes at intergenic regions are associated with ovarian cancer drug resistance	15
DNA methylation profiling identifies two distinct subgroups in breast cancers with low hormone receptor expression, mainly associated with HER2 amplification status	15
Abnormal methylation characteristics predict chemoresistance and poor prognosis in advanced high-grade serous ovarian cancer	15
5-Hydroxymethylation alterations in cell-free DNA reflect molecular distinctions of diffuse large B cell lymphoma at different primary sites	15
DNA methylation and aeroallergen sensitization: The chicken or the egg?	15
The CpG island methylator phenotype increases the risk of high-grade squamous intraepithelial lesions and cervical cancer	15
Chromatin accessibility analysis identifies GSTM1 as a prognostic marker in human glioblastoma patients	15
A core of differentially methylated CpG loci in gMDSCs isolated from neonatal and adult sources	15
Evaluation of cross-platform compatibility of a DNA methylation-based glucocorticoid response biomarker	15
Betamethasone administration during pregnancy is associated with placental epigenetic changes with implications for inflammation	14
Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures	14
Chromatin accessibility and transcriptome integrative analysis revealed AP-1-mediated genes potentially modulate histopathology features in psoriasis	14
Differentially hypomethylated cell-free DNA and coronary collateral circulation	14
PRDX1 gene-related epi-cblC disease is a common type of inborn error of cobalamin metabolism with mono- or bi-allelic MMACHC epimutations	14
Effect of menopausal hormone therapy on methylation levels in early and late postmenopausal women	14
H3K36 trimethylation-mediated biological functions in cancer	14
Epigenetic mechanisms underlying prostate cancer radioresistance	14
PRC2: an epigenetic multiprotein complex with a key role in the development of rhabdomyosarcoma carcinogenesis	14
Gender-affirming hormone therapy induces specific DNA methylation changes in blood	14
Impact of vitamin C supplementation on placental DNA methylation changes related to maternal smoking: association with gene expression and respiratory outcomes	14
Immune profiles and DNA methylation alterations related with non-muscle-invasive bladder cancer outcomes	14
Persistent blood DNA methylation changes one year after SARS-CoV-2 infection	13
LINE-1 hypomethylation is associated with poor outcomes in locoregionally advanced oropharyngeal cancer	13
Bariatric surgery-induced weight loss and associated genome-wide DNA-methylation alterations in obese individuals	13
Shifts in the immunoepigenomic landscape of monocytes in response to a diabetes-specific social support intervention: a pilot study among Native Hawaiian adults with diabetes	13
DNA methylation mediates the association between breastfeeding and early-life growth trajectories	13
Correction to: Evaluation of global and intragenic hypomethylation in colorectal adenomas improves patient stratification and colorectal cancer risk prediction	13
Identification of DNA methylation biomarkers with potential to predict response to neoadjuvant chemotherapy in triple-negative breast cancer	13
NEFM DNA methylation correlates with immune infiltration and survival in breast cancer	13
Correction: miR-29c plays a suppressive role in breast cancer by targeting the TIMP3/STAT1/FOXO1 pathway	13
DNA methylation and behavioral dysfunction in males with 47,XXY and 49,XXXXY: a pilot study	13
A deep learning model for early risk prediction of heart failure with preserved ejection fraction by DNA methylation profiles combined with clinical features	13
Comparative analysis of the DNA methylation landscape in CD4, CD8, and B memory lineages	12
Detection of ovarian cancer using plasma cell-free DNA methylomes	12
Transcriptional, epigenetic and metabolic signatures in cardiometabolic syndrome defined by extreme phenotypes	12
Advantages of vitrification preservation in assisted reproduction and potential influences on imprinted genes	12
Prenatal metal exposure, cord blood DNA methylation and persistence in childhood: an epigenome-wide association study of 12 metals	12
Regulation of oxytocin receptor gene expression in obsessive–compulsive disorder: a possible role for the microbiota-host epigenetic axis	12
Chidamide and venetoclax synergistically exert cytotoxicity on multiple myeloma by upregulating BIM expression	12
Gestational age acceleration is associated with epigenetic biomarkers of prenatal physiologic stress exposure	12
Association of peripheral blood DNA methylation level with Alzheimer’s disease progression	12
Interpretation of the role of germline and somatic non-coding mutations in cancer: expression and chromatin conformation informed analysis	12
Relative contributions of six lifestyle- and health-related exposures to epigenetic aging: the Coronary Artery Risk Development in Young Adults (CARDIA) Study	12
An examination of mediation by DNA methylation on birthweight differences induced by assisted reproductive technologies	12
Distinguishing transgender DNA methylation	12
Liquid biopsy, using a novel DNA methylation signature, distinguishes pancreatic adenocarcinoma from benign pancreatic disease	12
Novel blood-based FUT7 DNA methylation is associated with lung cancer: especially for lung squamous cell carcinoma	12
A novel DNA methylation signature is associated with androgen receptor activity and patient prognosis in bone metastatic prostate cancer	12
Characterisation of ethnic differences in DNA methylation between UK-resident South Asians and Europeans	12

The mediating effect of DNA methylation in the association between maternal sleep during pregnancy and offspring adiposity status: a prospective cohort study	12
Ionizing radiations induce shared epigenomic signatures unraveling adaptive mechanisms of cancerous cell lines with or without methionine dependency	12
Identification of DNA methylation-regulated genes as potential biomarkers for coronary heart disease via machine learning in the Framingham Heart Study	12
Longitudinal DNA methylation dynamics as a practical indicator in clinical epigenetics	11
Altered DNA methylation pattern reveals epigenetic regulation of Hox genes in thoracic aortic dissection and serves as a biomarker in disease diagnosis	11
Gene body methylation in cancer: molecular mechanisms and clinical applications	11
Altered methylation pattern in EXOC4 is associated with stroke outcome: an epigenome-wide association study	11
Circulating tumor DNA methylation marker MYO1-G for diagnosis and monitoring of colorectal cancer	11
Methylation status of nc886 epiallele reflects periconceptional conditions and is associated with glucose metabolism through nc886 RNAs	11
Transient Polycomb activity represses developmental genes in growing oocytes	11
Ultralow amounts of DNA from long-term archived serum samples produce high-quality methylomes	11
Regional gain and global loss of 5-hydroxymethylcytosine coexist in genitourinary cancers and regulate different oncogenic pathways	11
Correction to: Chromatin insulation dynamics in glioblastoma: challenges and future perspectives of precision oncology	11
Dynamics of epigenetic regulator gene BCOR mutation and response predictive value for hypomethylating agents in patients with myelodysplastic syndrome	11
Cardiovascular health and four epigenetic clocks	11
Fibroblast growth factor (FGF), FGF receptor (FGFR), and cyclin D1 (CCND1) DNA methylation in head and neck squamous cell carcinomas is associated with transcriptional activity, gene amplification, hu	11
HDAC8 suppresses the epithelial phenotype and promotes EMT in chemotherapy-treated basal-like breast cancer	11
Epimutations in both the TESK2 and MMACHC promoters in the Epi-cblC inherited disorder of intracellular metabolism of vitamin B12	11
Targeted genetic and epigenetic profiling of esophageal adenocarcinomas and non-dysplastic Barrett’s esophagus	11
Methylation-derived inflammatory measures and lung cancer risk and survival	11
Genome-wide DNA methylation analysis of extreme phenotypes in the identification of novel epigenetic modifications in diabetic retinopathy	11
Associations between indicators of socioeconomic position and DNA methylation: a scoping review	11
BDNF exon IV promoter methylation and antidepressant action: a complex interplay	11
Physical activity specifically evokes release of cell-free DNA from granulocytes thereby affecting liquid biopsy	11