Molecular Informatics

Papers
(The TQCC of Molecular Informatics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)
ArticleCitations
Cover Picture: (Mol. Inf. 6/2021)74
Cover Picture: (Mol. Inf. 1/2023)44
Development of a Novel Pharmacophore Model Guided by the Ensemble of Waters and Small Molecule Fragments Bound to SARS‐CoV‐2 Main Protease39
Cover Picture: (Mol. Inf. 4/2022)35
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Chemical Reactivity Prediction: Current Methods and Different Application Areas32
Application of Molecular Docking, Homology Modeling, and Chemometric Approaches to Neonicotinoid Toxicity against Aphis craccivora30
Development and Evaluation of Peptidomimetic Compounds against SARS‐CoV‐2 Spike Protein: An in silico and in vitro Study29
Fragment‐based deep molecular generation using hierarchical chemical graph representation and multi‐resolution graph variational autoencoder26
A Descriptor Set for Quantitative Structure‐property Relationship Prediction in Biologics22
A community effort in SARS‐CoV‐2 drug discovery20
Cover Picture: (Mol. Inf. 1/2024)20
Review of the 8th autumn school in chemoinformatics19
Machine Learning Boosted Docking (HASTEN): An Open‐source Tool To Accelerate Structure‐based Virtual Screening Campaigns18
Technique of Augmenting Molecular Graph Data by Perturbating Hidden Features18
Predicting the duration of action of β2‐adrenergic receptor agonists: Ligand and structure‐based approaches18
Application of automated machine learning in the identification of multi‐target‐directed ligands blocking PDE4B, PDE8A, and TRPA1 with potential use in the treatment of asthma and COPD17
Identification of Trovafloxacin, Ozanimod, and Ozenoxacin as Potent c‐Myc G‐Quadruplex Stabilizers to Suppress c‐Myc Transcription and Myeloma Growth17
Structure‐based Pharmacophore Screening Coupled with QSAR Analysis Identified Potent Natural‐product‐derived IRAK‐4 Inhibitors16
Cumulative phylogenetic, sequence and structural analysis of Insulin superfamily proteins provide unique structure‐function insights16
Virtual screening of natural products to enhance melanogenosis16
Kinematic analysis of kinases and their oncogenic mutations – Kinases and their mutation kinematic analysis15
Ambit‐SLN: an Open Source Software Library for Processing of Chemical Objects via SLN Linear Notation14
Predicting the bandgap and efficiency of perovskite solar cells using machine learning methods14
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Cover Picture: (Mol. Inf. 6/2022)13
Cover Picture: (Mol. Inf. 5/2024)13
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Cover Picture: (Mol. Inf. 11/2023)11
Chemoinformatic Analysis of Isothiocyanates: Their Impact in Nature and Medicine11
Natural‐Language Processing (NLP) based feature extraction technique in Deep‐Learning model to predict the Blood‐Brain‐Barrier permeability of molecules11
Use of tree‐based machine learning methods to screen affinitive peptides based on docking data11
Cover Picture: (Mol. Inf. 6/2024)10
Cover Picture: (Mol. Inf. 7/2024)10
Data‐driven approaches for identifying hyperparameters in multi‐step retrosynthesis10
Multi‐Task ADME/PK prediction at industrial scale: leveraging large and diverse experimental datasets**9
Antibacterial Activity Prediction of Plant Secondary Metabolites Based on a Combined Approach of Graph Clustering and Deep Neural Network9
Cover Picture: (Mol. Inf. 4/2025)9
In silico Studies on the Interaction between Mpro and PLpro From SARS‐CoV‐2 and Ebselen, its Metabolites and Derivatives8
Computational Designing and Prediction of ADMET Properties of Four Novel Imidazole‐based Drug Candidates Inhibiting Heme Oxygenase‐1 Causing Cancers8
Cover Picture: (Mol. Inf. 9/2021)8
Discovery of a pocket network on the domain 5 of the TrkB receptor – A potential new target in the quest for the new ligands8
Cover Picture: (5/2021)8
The VEGA web service: multipurpose online tools for molecular modelling and docking analyses8
KNIME Workflows for Chemoinformatic Characterization of Chemical Databases8
7
Cover Picture: (Mol. Inf. 10/2022)7
A comparison between 2D and 3D descriptors in QSAR modeling based on bio‐active conformations7
Cover Picture: (Mol. Inf. 12/2023)7
Exploring drug repositioning possibilities of kinase inhibitors via molecular simulation**7
6
Machine Learning for Prediction of Drug Targets in Microbe Associated Cardiovascular Diseases by Incorporating Host‐pathogen Interaction Network Parameters6
Deimos: A novel automated methodology for optimal grouping. Application to nanoinformatics case studies6
BIOMX‐DB: A web application for the BIOFACQUIM natural product database6
A Scaffold‐based Deep Generative Model Considering Molecular Stereochemical Information6
Cover Picture: (Mol. Inf. 1/2022)6
Cover Picture: (Mol. Inf. 7/2023)6
6
Cover Picture: (Mol. Inf. 10/2024)6
Distinct binding hotspots for natural and synthetic agonists of FFA4 from in silico approaches**5
Cover Picture: (Mol. Inf. 8‐9/2023)5
Network‐Based Approaches for Drug Repositioning5
5
Identification of a PD1/PD‐L1 inhibitor by structure‐based pharmacophore modelling, virtual screening, molecular docking and biological evaluation**5
5
My 50 Years with Chemoinformatics5
Machine Learning in Drug Development for Neurological Diseases: A Review of Blood Brain Barrier Permeability Prediction Models5
5
PredictingS. aureusantimicrobial resistance with interpretable genomic space maps5
Generative Adversarial Networks for De Novo Molecular Design4
A Molecular Representation to Identify Isofunctional Molecules4
4
4
4
AliNA – a deep learning program for RNA secondary structure prediction4
Feature importance‐based interpretation of UMAP‐visualized polymer space4
GDMol: Generative Double‐Masking Self‐Supervised Learning for Molecular Property Prediction4
Turbo Similarity Searching: Effect of Partial Ranking and Fusion Rules on ChEMBL Database4
4
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