Proteomics Clinical Applications

Article	Citations
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Parallel accumulation‐serial fragmentation method for in‐depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer	25
Identification of a potential prognostic plasma biomarker of acute ischemic stroke via untargeted LC‐MS metabolomics	23
Current advances in antibody‐based serum biomarker studies: From protein microarray to phage display	16
Plasma proteomics identify potential severity biomarkers from COVID‐19 associated network	15
Masthead: Proteomics 2'23	14
Proteomic study of apheresis platelets made HLA class I deficient for transfusion of refractory patients	14
Front Cover	13
Editorial Board: Proteomics 6'22	12
Application of Proteomics in Maternal and Neonatal Health: Advancements and Future Directions	12
Masthead: Proteomics 2–3'21	11
Front Cover	11
Design of experiments approach for systematic optimization of a single‐shot diaPASEF plasma proteomics workflow applicable for high‐throughput	10
Advances in plasma proteomics: Call for papers for an upcoming special issue	10
Liver Tissue Proteins Improve the Accuracy of Plasma Proteins as Biomarkers in Diagnosing Metabolic Dysfunction‐Associated Steatohepatitis	9
Salivary Proteome Is Altered in Children With Small Area Thermal Burns	8
Associations of inflammation‐related proteome with demographic and clinical characteristics of people with HIV in South Africa	8
Masthead: Proteomics 5'22	8
Proteomics and bioinformatics investigations to improve serological diagnosis of canine brucellosis	8
Comprehensive characterization of protein modifications using mass spectrometry and dry blood spots	8
Editorial Board: Proteomics 5'21	7
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Masthead: Proteomics 1'24	7
Editorial Board: Proteomics 1'23	6
Proteomic profiling of idiopathic Parkinson's disease primary patient cells by SWATH‐MS	6

Is the proteomic composition of the salivary pellicle dependent on the substrate material?	6
Front Cover	6
Editorial Board: Proteomics 5'23	5
Masthead: Proteomics 6'24	5
Proteomic and lipidomic biomarkers in the diagnosis and progression of inflammatory bowel disease – a review	5
The crosstalking of lactate‐Histone lactylation and tumor	5
Editorial Board: Proteomics 2'23	5
Development of a protein microarray for profiling circulating autoantibodies in human diseases	5
A proteomic investigation of isogenic radiation resistant prostate cancer cell lines	5
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Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer‐like environment	4
Protein sample preparation for tissue distribution study	4
Label‐free quantitative proteomics identifies unique proteomes of clinical isolates of the Liverpool Epidemic Strain of Pseudomonas aeruginosa and laboratory strain PAO1	4
Mass spectrometry‐based proteomic applications in dental implants research	4
Front Cover	4
Editorial Board: Proteomics 4'21	4
Proteomic Analysis of Substantia Nigra Reveals Molecular Insights Into the Neuroprotection Effect of Rosmarinic Acid Treatment in MPTP‐Induced Mouse Model of Parkinson's Disease	4
Proteomics Analysis of Human Chorionic Villi Reveals Dysregulated Pathways That Contribute to Recurrent Pregnancy Loss	4
Masthead: Proteomics 6'22	4
Intraoperative plasma proteomic changes in cardiac surgery: In search of biomarkers of post‐operative delirium	4
Biomarkers for the central nervous system complications of sickle cell disease: are we there yet?	4
Editorial Board: Proteomics 3'24	4
Editorial Board: Proteomics 1'24	3
Characterisation of Platelet Releasate Proteome in Relapsing‐Remitting Multiple Sclerosis Reveals Dysregulation of Inflammatory Signalling and Extracellular Vesicle Dynamics	3
Front Cover	3
Front Cover	3
Editorial Board: Proteomics 2'24	3
Identification of a serum biomarker signature associated with metastatic prostate cancer	3
Activity‐Based Proteome Profiling of Serum Serine Hydrolases: Application in Pediatric Abusive Head Trauma	3
iTRAQ and two‐dimensional‐LC‐MS/MS reveal NAA10 is a potential biomarker in esophageal squamous cell carcinoma	3
Editorial Board: Proteomics 6'21	3
Serum proteomics profiling identifies a preliminary signature for the diagnosis of early‐stage lung cancer	3
Proteoglycans in breast cancer, identification and characterization by LC‐MS/MS assisted proteomics approach: A review	3
Tape stripped stratum corneum samples are suitable for diagnosis and comprehensive proteomic investigation in mycosis fungoides	3
Front Cover	3
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ECMHA‐PP: A Breast Cancer Prognosis Prediction Model Based on Energy‐Constrained Multi‐Head Self‐Attention	3
Qualitative and quantitative proteomic and metaproteomic analyses of healthy human urine sediment	2
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Characterization of the Metabolic Proteome of Serum From Patients With Diabetic Distal Symmetric Polyneuropathy	2
Editorial Board: Proteomics 4'23	2
Masthead: Proteomics 3'22	2
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Editorial Board: Proteomics 6'23	2
Proteomic Analysis of Fibroblasts Exposed to Resin Composite Release	2
Analytical validation of a multi‐protein, serum‐based assay for disease activity assessments in multiple sclerosis	2
Systematic evaluation of plasma signaling cascades by functional proteomics approaches: SARS‐CoV‐2 infection as model	2
Screening of differentially expressed proteins in placentas from patients with late‐onset preeclampsia	2
Plasma nontargeted peptidomics discovers potential biomarkers for major depressive disorder	2

Plasma proteomics analysis of adolescent idiopathic scoliosis patients revealed by Quadrupole‐Orbitrap mass spectrometry	2
Proteomic analysis identified potential age‐associated prognostic biomarkers in pneumonia‐derived paediatric sepsis	2
Proteome of Renal Tubuli and Serum Differentiate Pre‐Existing Type 2 Diabetes and Post‐Transplant Diabetes in Kidney Transplant Recipients	2
Tandem mass tag‐based quantitative proteomic analysis of cervical cancer	2
Quantifying Protein Acetylation in Diabetic Nephropathy from Formalin‐Fixed Paraffin‐Embedded Tissue	2
Masthead: Proteomics 4'23	2
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Masthead: Proteomics 4'21	2
Proteomics and Metabolomics Study on the Responses of Sertoli Cells Infected With Brucella and Its bvfA‐Deletion Strains	1
Proteomics of ZIKV infected amniotic fluids of microcephalic fetuses reveals extracellular matrix and immune system dysregulation	1
A comparative proteomic analysis for non‐invasive early prediction of hypoxic‐ischemic injury in asphyxiated neonates	1
Masthead: Proteomics 3'24	1
Comparative proteomics of saliva of healthy and gingivitis individuals from Rio de Janeiro	1
Proteomic profiling of human bone from different anatomical sites – A pilot study	1
Comparing Venous vs. Capillary Blood Collection Methods for Proteomic Measurement in Peripheral Blood	1
Quantitative comparison of the renal pelvic urine and bladder urine to examine modifications of the urine proteome by the lower urinary tract	1
Editorial Board: Proteomics 6'24	1
Mass spectrometry‐based proteomic profiling of sonicate fluid differentiates Staphylococcus aureus periprosthetic joint infection from non‐infectious failure: A pilot study	1
Optimization of a lysis method to isolate periplasmic proteins from Gram‐negative bacteria for clinical mass spectrometry	1
The Contribution and Perspectives of Proteomics to Epithelial Ovarian Cancer	1
Editorial Board: Proteomics 5'22	1
On the Ocean of Biomarkers for the Precise Diagnosis and Prognosis of Lung Diseases	1
Prognostic value of protein biomarkers in liver transplantation: A systematic review	1
Label‐free quantitative proteomic and phosphoproteomic analyses of renal biopsy tissues in membranous nephropathy	1
Quantitative proteomics analysis reveals novel insights into mechanisms of action of disulfiram (DSF)	1
A protein microarray‐based serum proteomic investigation reveals distinct autoantibody signature in colorectal cancer	1
Editorial Board: Proteomics 4'24	1
Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock	1
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Mass Spectrometric and Artificial Intelligence‐Based Identification of the Secretome of Plasmodium falciparum Merozoites to Provide Novel Candidates for Vaccine Development Pipeline	1
Integrative analysis of transcriptome and proteome profiles in primary and recurrent glioblastoma	1
Editorial Board: Proteomics 1'22	1
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Editorial Board: Proteomics 2'22	0
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Proteomic discovery in sickle cell disease: Elevated neurogranin levels in children with sickle cell disease	0
Primary angle closure glaucoma is characterized by altered extracellular matrix homeostasis in the iris	0
Identification of potential extracellular vesicle protein markers altered in osteosarcoma from public databases	0
Realm of proteomics in breast cancer management and drug repurposing to alleviate intricacies of treatment	0
N‐glycosylation of disease‐specific haptoglobin for the early screening of diabetic retinopathy	0
Masthead: Proteomics 4'22	0
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Front Cover	0
Masthead: Proteomics 2'24	0
MALDI mass spectrometry imaging unravels organ and amyloid‐type specific peptide signatures in pulmonary and gastrointestinal amyloidosis	0
Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	0
Rare HER2 L796P missense mutation promotes the growth and oncogenic signaling in breast cancer cells	0
Are mass spectrometry imaging‐based diagnostics becoming reality?	0
Two effective models based on comprehensive lipidomics and metabolomics can distinguish BC versus HCs, and TNBC versus non‐TNBC	0
Proteomics and phosphoproteomics analysis of vitreous in idiopathic epiretinal membrane patients	0
Global Profiling of Protein Lactylation in Human Hippocampi	0
Fast and straightforward simultaneous quantification of multiple apolipoproteins in human serum on a high‐throughput LC‐MS/MS platform	0
Proteomic profiles of Zika virus‐infected placentas bearing fetuses with microcephaly	0
Methods and clinical biomarker discovery for targeted proteomics using Olink technology	0
Front Cover	0
Lipopolysaccharide‐regulated secretion of soluble and vesicle‐based proteins from a panel of colorectal cancer cell lines	0
Bortezomib is significantly beneficial for de novo pediatric AML patients with low phosphorylation of the NF‐κB subunit RelA	0
Detection of recombinant Spike protein in the blood of individuals vaccinated against SARS‐CoV‐2: Possible molecular mechanisms	0
Robust subtyping of non‐small cell lung cancer whole sections through MALDI mass spectrometry imaging	0
Subcellular proteomics insights into Alzheimer's disease development	0
Proteomic Correlates of Vitamin D Supplementation in the Atherosclerosis Risk in Communities (ARIC) Study	0
Front Cover	0
Systemic Changes in Early Pregnancy in the Mare: An Integrated Proteomic Analysis of Blood Plasma, Histotroph, and Yolk Sac Fluid at Day 14 Post‐Ovulation	0
Masthead: Proteomics 5'24	0
Profiling of proteome changes in plasma of HIV‐infected patients receiving antiretroviral therapy	0
Front Cover	0
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Proteomic changes of botulinum neurotoxin injection on muscle growth in children with spastic cerebral palsy	0
Exosomal proteins as a source of biomarkers in colon cancer‐derived peritoneal carcinomatosis – A pilot study	0
Understanding LC/MS‐Based Metabolomics: A Detailed Reference for Natural Product Analysis	0
Masthead: Proteomics 6'23	0
Plasma proteome profiling using tandem mass tag labeling technology reveals potential biomarkers for Parkinson's disease: a preliminary study	0
Issue Information: Proteomics 1'25	0
Association analysis of hepatocellular carcinoma‐related hub proteins and hub genes	0
Integrated glycomics strategy for galactosylated‐N‐glycans recognized by Bandeiraea Simplicifolia Lectin I in salivary proteins associated with lung cancer	0
Analysis of Unfolded Protein Response Activation in Colon Adenocarcinoma Epithelial Cells: A Proteomic Study	0
Screening of novel biomarkers for acute kidney transplant rejection using DIA‐MS based proteomics	0
Proteomic landscape of primary and metastatic brain tumors for heterogeneity discovery	0
Protein profiles in plasma: Development from infancy to 5 years of age	0

Comparisons of Whole Saliva and Cell Free Saliva by DIA‐Based Proteome Profiling	0
Clinical applications of plasma proteomics and peptidomics: Towards precision medicine	0
Integrating SWATH‐MS proteomics and transcriptome analysis to preliminarily identify three DEGs as biomarkers for proliferative diabetic retinopathy	0
LC‐MS‐based urine metabolomics analysis of chronic subdural hematoma for biomarker discovery	0
Potential functionality of Cutibacterium acnes extracellular vesicles in atopic dermatitis and acne vulgaris: A comparative proteomic analysis	0
Immunoproteomic Identification of Noncarbohydrate Antigens Eliciting Graft‐Specific Adaptive Immune Responses in Patients with Bovine Pericardial Bioprosthetic Heart Valves	0
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Front Cover	0
Front Cover	0
Front Cover	0
Descriptive proteomics of paired human vocal fold and buccal mucosa tissue	0
Integration of the cancer cell secretome and transcriptome reveals potential noninvasive diagnostic markers for bladder cancer	0
Differential Abundance of Protein Acylation in Mycobacterium tuberculosis Under Exposure to Nitrosative Stress	0
Pilot proteomic study of locally advanced rectal cancer before and after neoadjuvant chemoradiotherapy indicates high metabolic activity in non‐responders' tumor tissue	0
Editorial Board: Proteomics 5'24	0
Front Cover	0
Front Cover	0
Proteomics of azoospermia: Towards the discovery of reliable markers for non‐invasive diagnosis	0
TMT‐Based Quantitative Proteomic Profiling of Human Esophageal Cancer Cells Reveals the Potential Mechanism and Potential Therapeutic Targets Associated With Radioresistance	0
Computational Insight in the Identification of Non‐Synonymous Single‐Nucleotide Polymorphism Affecting the Structure and Function of Interleukin‐4	0
Pressure Cycling Technology Combined With MicroLC‐SWATH Mass Spectrometry for the Analysis of Sex‐Related Differences Between Male and Female Cerebella: A Promising Approach to Investigating Proteomic	0
Masthead: Proteomics 3'23	0
Issue Information: Proteomics 2'25	0
Evaluation of autoantibody signatures in pituitary adenoma patients using human proteome arrays	0
Proteomics reveals unique plasma signatures in constitutional thinness	0
Exploration of quantitative site‐specific serum O‐glycoproteomics with isobaric labeling for the discovery of putative O‐glycoprotein biomarkers	0
Plasma proteome analysis and validation of patients with community‐acquired pneumonia: A cohort study	0
dRama: Differential Ramachandran Plot as a Tool to Analyze Subtle Changes in Protein Secondary Structure	0
Urinary collagen peptides: Source of markers for bone metabolic processes in kidney transplant recipients	0
Front Cover	0
Editorial Board: Proteomics 4'22	0
Masthead: Proteomics 5'23	0
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Valosin‐containing protein (VCP/p97) is prognostically unfavorable in pediatric AML, and negatively correlates with unfolded protein response proteins IRE1 and GRP78: A report from the Children's Onco	0
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“Hide and seek”: Misleading transferrin variants in PMM2‐CDG complicate diagnostics	0
Proteomic analysis of human articular cartilage unravels the dyscoagulation in osteoarthritis and the potential value of serpinA5 as a biomarker for osteoarthritis	0
Quantitative proteomics analysis identifies salivary biomarkers for early detection of pregnancy loss in a Singaporean cohort—A pilot study	0
Human peripheral blood mononuclear cells as a valuable source of disease‐related biomarkers: Evidence from comparative proteomics studies	0
Comparative Profiling of Milk Somatic Cells Proteomes Revealed Key Players in Mammary Immune Mechanisms During Mastitis in Tropical Sahiwal (Bos indicus) Cows	0
Cerebrospinal fluid proteins in idiopathic intracranial hypertension: An exploratory SWATH proteomics analysis	0
Front Cover	0
Proteomic analysis of extracellular vesicle cargoes mirror the cardioprotective effects of rivaroxaban in patients with venous thromboembolism	0
Correction to “Identification of Novel Biomarkers for Frailty Diagnosis Via Serum Amino Acids Metabolomic Analysis Using UPLC‐MS/MS”	0
Front Cover	0
Proteomic and metabolomic characterization of bone, liver, and lung metastases in plasma of breast cancer patients	0
In Search of Candidate Protein Biomarkers Related to COVID‐19 in Solid Tissues and Non‐Blood Fluids: An Update	0
Prospecting Specific Protein Patterns for High Body Mass Index (BMI), Metabolic Syndrome and Type 2 Diabetes in Saliva and Blood Plasma From a Brazilian Population	0
A novel micropeptide, Slitharin, exerts cardioprotective effects in myocardial infarction	0
Placental and plasma early predictive biomarkers for gestational diabetes mellitus	0
Amniotic fluid metabolomics identifies impairment of glycerophospholipid and amino acid metabolism during congenital Zika syndrome development	0
Masthead: Proteomics 1'22	0
A comparative study of data‐dependent acquisition and data‐independent acquisition in proteomics analysis of clinical lung cancer tissues constrained by blood contamination	0
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Spindle apparatus coiled‐coil protein 1 (SPDL1) serves as a novel prognostic biomarker in triple‐negative breast cancer	0
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Research progress in protein microarrays: Focussing on cancer research	0
Editorial Board: Proteomics 3'23	0
Protein Network Alterations in G‐CSF Treated Severe Congenital Neutropenia Patients and Beneficial Effects of Oral Health Intervention	0
Editorial Board: Proteomics 3'22	0
Intramural Administration of Translational Inhibitor Puromycin Upon Balloon Angioplasty Inhibits SMC Proliferation and Protein Synthesis–Vascular Proteome Profiling Analysis	0
Front Cover	0
Phosphoproteomics analysis of diabetic cardiomyopathy in aging‐accelerated mice and effects of D‐pinitol	0
Minimally Invasive Versus Invasive Proteomics: Urine and Blood Biomarkers in Coronary Artery Disease	0
Comprehensive profiling of the human fecal proteome from IBD patients with DIA‐MS enables evaluation of disease‐relevant proteins	0
Editorial Board: Proteomics 2–3'21	0
Advancements in Single‐Cell Proteomics and Mass Spectrometry‐Based Techniques for Unmasking Cellular Diversity in Triple Negative Breast Cancer	0
BoxCar increases the depth and reproducibility of diabetic urinary proteome analysis	0
Proteomics profiling of kidney brush border membrane from rats using LC‐MS/MS analysis	0
Masthead: Proteomics 6'21	0
Masthead: Proteomics 4'24	0
Front Cover	0
Integrated plasma proteomics and N‐glycoproteomics reveals alterations in the N‐glycosylation in Chinese hepatocellular carcinoma patients	0
Masthead: Proteomics 2'22	0
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Comparing endocervical mucus proteome of humans and rhesus macaques	0
Comparative salivary proteomics analysis of children with and without early childhood caries using the DIA approach: A pilot study	0
Mass spectrometry‐based proteomic analysis of the effect of storage temperature on non‐invasively collected samples of human stratum corneum	0
Front Cover	0
Identification of novel biomarkers for frailty diagnosis via serum amino acids metabolomic analysis using UPLC‐MS/MS	0
Advances in plasma proteomics: Moving from technology to precision medicine	0
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Efficacy of Glucocorticoids in the Treatment of Retinal Detachment With Choroidal Detachment: Analysis by Proteomics	0
Plasma biomarkers for systemic inflammation in COVID‐19 survivors	0
Masthead: Proteomics 1'23	0
Causal Effects From Kidney Function to Plasma Proteome: Integrated Observational and Mendelian Randomization Analysis With >50,000 UK Biobank Participants	0
Masthead: Proteomics 5'21	0
Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers	0
Optimised plasma sample preparation and LC‐MS analysis to support large‐scale proteomic analysis of clinical trial specimens: Application to the Fenofibrate Intervention and Event Lowering in Diabetes	0
Discovery and validation of serum glycoprotein biomarkers for high grade serous ovarian cancer	0
Quantitative proteomics approach reveals novel biomarkers and pathological mechanism of keloid	0
The functional roles of m6A modification in prostate cancer	0