Proteomics Clinical Applications

Article	Citations
Clinical applications of plasma proteomics and peptidomics: Towards precision medicine	26
Untargeted metabolomics of human plasma reveal lipid markers unique to chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis	23
Plasma biomarkers for systemic inflammation in COVID‐19 survivors	20
Detection of recombinant Spike protein in the blood of individuals vaccinated against SARS‐CoV‐2: Possible molecular mechanisms	15
Proteins linked to atherosclerosis and cell proliferation are associated with the shrunken pore syndrome in heart failure patients	14
Proteomic profiling of human bone from different anatomical sites – A pilot study	13
Analytical validation of a multi‐protein, serum‐based assay for disease activity assessments in multiple sclerosis	13
Proteome Analyses Reveal S100A11, S100P, and RBM25 Are Tumor Biomarkers in Colorectal Cancer	11
Plasma proteomics identify potential severity biomarkers from COVID‐19 associated network	11
Research progress in protein microarrays: Focussing on cancer research	11
MALDI‐IMS as a Tool to Determine the Myocardial Response to Syndecan‐2‐Selected Mesenchymal Stromal Cell Application in an Experimental Model of Diabetic Cardiomyopathy	10
Deep Proteomic Insights into the Individual Short‐Term Pellicle Formation on Enamel—An In Situ Pilot Study	10
Robust subtyping of non‐small cell lung cancer whole sections through MALDI mass spectrometry imaging	9
Is the proteomic composition of the salivary pellicle dependent on the substrate material?	9
N‐Glycan profiling of chondrocytes and fibroblast‐like synoviocytes: Towards functional glycomics in osteoarthritis	9
Revealing the changes of IgG subclass‐specific N‐glycosylation in colorectal cancer progression by high‐throughput assay	9
Quantitative proteomics approach reveals novel biomarkers and pathological mechanism of keloid	9
Human peripheral blood mononuclear cells as a valuable source of disease‐related biomarkers: Evidence from comparative proteomics studies	8
A protein microarray‐based serum proteomic investigation reveals distinct autoantibody signature in colorectal cancer	8
Comparing endocervical mucus proteome of humans and rhesus macaques	8
Current advances in antibody‐based serum biomarker studies: From protein microarray to phage display	8
Evaluation of autoantibody signatures in pituitary adenoma patients using human proteome arrays	7
Proteoglycans in breast cancer, identification and characterization by LC‐MS/MS assisted proteomics approach: A review	7
MALDI mass spectrometry imaging unravels organ and amyloid‐type specific peptide signatures in pulmonary and gastrointestinal amyloidosis	6
Screening of differentially expressed proteins in placentas from patients with late‐onset preeclampsia	6

Integrating SWATH‐MS proteomics and transcriptome analysis to preliminarily identify three DEGs as biomarkers for proliferative diabetic retinopathy	6
Proteomic analysis identified potential age‐associated prognostic biomarkers in pneumonia‐derived paediatric sepsis	6
Plasma proteomics analysis of adolescent idiopathic scoliosis patients revealed by Quadrupole‐Orbitrap mass spectrometry	5
Plasma proteome profiling using tandem mass tag labeling technology reveals potential biomarkers for Parkinson's disease: a preliminary study	5
A proteomic investigation of isogenic radiation resistant prostate cancer cell lines	5
Bortezomib is significantly beneficial for de novo pediatric AML patients with low phosphorylation of the NF‐κB subunit RelA	5
Pilot proteomic analysis of cerebrospinal fluid in Alzheimer's disease	5
Proteomic profiles of Zika virus‐infected placentas bearing fetuses with microcephaly	5
Proteomics of ZIKV infected amniotic fluids of microcephalic fetuses reveals extracellular matrix and immune system dysregulation	5
Proteomic discovery in sickle cell disease: Elevated neurogranin levels in children with sickle cell disease	4
iTRAQ and two‐dimensional‐LC‐MS/MS reveal NAA10 is a potential biomarker in esophageal squamous cell carcinoma	4
Optimised plasma sample preparation and LC‐MS analysis to support large‐scale proteomic analysis of clinical trial specimens: Application to the Fenofibrate Intervention and Event Lowering in Diabetes	4
Primary angle closure glaucoma is characterized by altered extracellular matrix homeostasis in the iris	4
The crosstalking of lactate‐Histone lactylation and tumor	4
Optimization of a lysis method to isolate periplasmic proteins from Gram‐negative bacteria for clinical mass spectrometry	4
Identification of a potential prognostic plasma biomarker of acute ischemic stroke via untargeted LC‐MS metabolomics	4
Placental and plasma early predictive biomarkers for gestational diabetes mellitus	4
Label‐free quantitative proteomics identifies unique proteomes of clinical isolates of the Liverpool Epidemic Strain of Pseudomonas aeruginosa and laboratory strain PAO1	4
Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	4
Proteomic study of apheresis platelets made HLA class I deficient for transfusion of refractory patients	4
Development of a protein microarray for profiling circulating autoantibodies in human diseases	4
Mass spectrometry‐based proteomic analysis of the effect of storage temperature on non‐invasively collected samples of human stratum corneum	3
Tandem mass tag‐based quantitative proteomic analysis of cervical cancer	3
Mass spectrometry‐based proteomic profiling of sonicate fluid differentiates Staphylococcus aureus periprosthetic joint infection from non‐infectious failure: A pilot study	3
Urinary collagen peptides: Source of markers for bone metabolic processes in kidney transplant recipients	3
Protein profiles in plasma: Development from infancy to 5 years of age	3
Pilot proteomic study of locally advanced rectal cancer before and after neoadjuvant chemoradiotherapy indicates high metabolic activity in non‐responders' tumor tissue	3
Measuring fucosylated alpha‐fetoprotein in hepatocellular carcinoma: A comparison of μTAS and parallel reaction monitoring	3
Phosphoproteomics analysis of diabetic cardiomyopathy in aging‐accelerated mice and effects of D‐pinitol	3
Quantitative proteomics analysis identifies salivary biomarkers for early detection of pregnancy loss in a Singaporean cohort—A pilot study	3
Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers	3
Intraoperative plasma proteomic changes in cardiac surgery: In search of biomarkers of post‐operative delirium	3
Exosomal proteins as a source of biomarkers in colon cancer‐derived peritoneal carcinomatosis – A pilot study	3
Evaluation of the Aortopathy in the Ascending Aorta: The Novelty of Using Matrix‐Assisted Laser Desorption/Ionization Imaging	3
A comparative study of data‐dependent acquisition and data‐independent acquisition in proteomics analysis of clinical lung cancer tissues constrained by blood contamination	3
Proteomic analysis of human articular cartilage unravels the dyscoagulation in osteoarthritis and the potential value of serpinA5 as a biomarker for osteoarthritis	3
Identification of a serum biomarker signature associated with metastatic prostate cancer	3
Proteomic profiling of idiopathic Parkinson's disease primary patient cells by SWATH‐MS	2
Ex vivo glucocorticoid‐induced secreted proteome approach for discovery of glucocorticoid‐responsive proteins in human serum	2
Advances in plasma proteomics: Call for papers for an upcoming special issue	2
Association analysis of hepatocellular carcinoma‐related hub proteins and hub genes	2
“Hide and seek”: Misleading transferrin variants in PMM2‐CDG complicate diagnostics	2
Mass spectrometry‐based proteomic applications in dental implants research	2
Proteomics and phosphoproteomics analysis of vitreous in idiopathic epiretinal membrane patients	2
Plasma nontargeted peptidomics discovers potential biomarkers for major depressive disorder	2
Lipopolysaccharide‐regulated secretion of soluble and vesicle‐based proteins from a panel of colorectal cancer cell lines	2
Realm of proteomics in breast cancer management and drug repurposing to alleviate intricacies of treatment	2
Are mass spectrometry imaging‐based diagnostics becoming reality?	2
Discovery and validation of serum glycoprotein biomarkers for high grade serous ovarian cancer	2
Comparative proteomics of saliva of healthy and gingivitis individuals from Rio de Janeiro	2

Profiling of proteome changes in plasma of HIV‐infected patients receiving antiretroviral therapy	2
Descriptive proteomics of paired human vocal fold and buccal mucosa tissue	2
PolyBoost: An enhanced genomic variant classifier using extreme gradient boosting	2
Qualitative and quantitative proteomic and metaproteomic analyses of healthy human urine sediment	2
Investigating potential protein markers of cardiovascular disease in children with type 1 diabetes mellitus	2
Integrated glycomics strategy for galactosylated‐N‐glycans recognized by Bandeiraea Simplicifolia Lectin I in salivary proteins associated with lung cancer	2
Proteomics reveals unique plasma signatures in constitutional thinness	2
The functional roles of m6A modification in prostate cancer	2
Advances in plasma proteomics: Moving from technology to precision medicine	2
Systematic evaluation of plasma signaling cascades by functional proteomics approaches: SARS‐CoV‐2 infection as model	2
BoxCar increases the depth and reproducibility of diabetic urinary proteome analysis	2
Exploration of quantitative site‐specific serum O‐glycoproteomics with isobaric labeling for the discovery of putative O‐glycoprotein biomarkers	2
Identification of differentially expressed proteins between fused and open sutures in sagittal nonsyndromic craniosynostosis during suture development by quantitative proteomic analysis	1
Proteomics and bioinformatics investigations to improve serological diagnosis of canine brucellosis	1
Proteomics of azoospermia: Towards the discovery of reliable markers for non‐invasive diagnosis	1
Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer‐like environment	1
Mass Spectrometric and Artificial Intelligence‐Based Identification of the Secretome of Plasmodium falciparum Merozoites to Provide Novel Candidates for Vaccine Development Pipeline	1
Back Cover: HIV and Proteomics: What We Have Learned from High Throughput Studies	1
Identification of novel biomarkers for frailty diagnosis via serum amino acids metabolomic analysis using UPLC‐MS/MS	1
Proteomic and lipidomic biomarkers in the diagnosis and progression of inflammatory bowel disease – a review	1
Spindle apparatus coiled‐coil protein 1 (SPDL1) serves as a novel prognostic biomarker in triple‐negative breast cancer	1
Label‐free quantitative proteomic and phosphoproteomic analyses of renal biopsy tissues in membranous nephropathy	1
Comprehensive profiling of the human fecal proteome from IBD patients with DIA‐MS enables evaluation of disease‐relevant proteins	1
Screening of novel biomarkers for acute kidney transplant rejection using DIA‐MS based proteomics	1
Identification of potential extracellular vesicle protein markers altered in osteosarcoma from public databases	1
A novel micropeptide, Slitharin, exerts cardioprotective effects in myocardial infarction	1
Proteomics Analysis of Human Chorionic Villi Reveals Dysregulated Pathways That Contribute to Recurrent Pregnancy Loss	1
Methods and clinical biomarker discovery for targeted proteomics using Olink technology	1
Amniotic fluid metabolomics identifies impairment of glycerophospholipid and amino acid metabolism during congenital Zika syndrome development	1
Fast and straightforward simultaneous quantification of multiple apolipoproteins in human serum on a high‐throughput LC‐MS/MS platform	1
Serum proteomics profiling identifies a preliminary signature for the diagnosis of early‐stage lung cancer	1
Integration of the cancer cell secretome and transcriptome reveals potential noninvasive diagnostic markers for bladder cancer	1
Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock	1
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Proteomic and metabolomic characterization of bone, liver, and lung metastases in plasma of breast cancer patients	1
Proteomics profiling of kidney brush border membrane from rats using LC‐MS/MS analysis	1
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Front Cover: Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	0
Front Cover	0
Immunoproteomic Identification of Noncarbohydrate Antigens Eliciting Graft‐Specific Adaptive Immune Responses in Patients with Bovine Pericardial Bioprosthetic Heart Valves	0
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Masthead: Proteomics 6'20	0
Front Cover	0
Editorial Board: Proteomics 4'21	0
Characterization of the Metabolic Proteome of Serum From Patients With Diabetic Distal Symmetric Polyneuropathy	0
Subcellular proteomics insights into Alzheimer's disease development	0
Masthead: Proteomics 4'21	0
Editorial Board: Proteomics 3'23	0
Pressure Cycling Technology Combined With MicroLC‐SWATH Mass Spectrometry for the Analysis of Sex‐Related Differences Between Male and Female Cerebella: A Promising Approach to Investigating Proteomic	0
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Editorial Board: Proteomics 2'22	0
Tape stripped stratum corneum samples are suitable for diagnosis and comprehensive proteomic investigation in mycosis fungoides	0
Editorial Board: Proteomics 5'23	0
Masthead: Proteomics 2–3'21	0
Proteomic Analysis of Fibroblasts Exposed to Resin Composite Release	0
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Two effective models based on comprehensive lipidomics and metabolomics can distinguish BC versus HCs, and TNBC versus non‐TNBC	0
Masthead: Proteomics 4'22	0
Front Cover	0
Editorial Board: Proteomics 1'24	0
Editorial Board: Proteomics 1'22	0
Editorial Board: Proteomics 4'23	0
Front Cover	0
Differential Abundance of Protein Acylation in Mycobacterium tuberculosis Under Exposure to Nitrosative Stress	0
Masthead: Proteomics 6'23	0
Editorial Board: Proteomics 3'24	0
Design of experiments approach for systematic optimization of a single‐shot diaPASEF plasma proteomics workflow applicable for high‐throughput	0
Comprehensive characterization of protein modifications using mass spectrometry and dry blood spots	0
Front Cover	0
Editorial Board: Proteomics 1'21	0
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Masthead: Proteomics 5'21	0
Quantitative proteomics analysis reveals novel insights into mechanisms of action of disulfiram (DSF)	0
Editorial Board: Proteomics 3'22	0
Masthead: Proteomics 4'23	0
Front Cover	0
Front Cover	0
Masthead: Proteomics 5'22	0
Comparative salivary proteomics analysis of children with and without early childhood caries using the DIA approach: A pilot study	0
Editorial Board: Proteomics 6'24	0

Correction to “Identification of Novel Biomarkers for Frailty Diagnosis Via Serum Amino Acids Metabolomic Analysis Using UPLC‐MS/MS”	0
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Plasma proteome analysis and validation of patients with community‐acquired pneumonia: A cohort study	0
Editorial Board: Proteomics 6'21	0
Front Cover	0
Proteomics in Kidney and Cardiovascular Clinical Research	0
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Masthead: Proteomics 6'22	0
Editorial Board: Proteomics 6'20	0
Masthead: Proteomics 1'24	0
Biomarkers for the central nervous system complications of sickle cell disease: are we there yet?	0
Comparative Profiling of Milk Somatic Cells Proteomes Revealed Key Players in Mammary Immune Mechanisms During Mastitis in Tropical Sahiwal (Bos indicus) Cows	0
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Masthead: Proteomics 6'21	0
Masthead: Proteomics 1'23	0
Masthead: Proteomics 6'24	0
Editorial Board: Proteomics 6'22	0
Masthead: Proteomics 2'22	0
Protein sample preparation for tissue distribution study	0
Masthead: Proteomics 3'23	0
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Front Cover	0
Masthead: Proteomics 5'24	0
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Editorial Board: Proteomics 4'22	0
N‐glycosylation of disease‐specific haptoglobin for the early screening of diabetic retinopathy	0
Cerebrospinal fluid proteins in idiopathic intracranial hypertension: An exploratory SWATH proteomics analysis	0
Front Cover	0
Masthead: Proteomics 5'23	0
Front Cover	0
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Integrative analysis of transcriptome and proteome profiles in primary and recurrent glioblastoma	0
Integrated plasma proteomics and N‐glycoproteomics reveals alterations in the N‐glycosylation in Chinese hepatocellular carcinoma patients	0
A comparative proteomic analysis for non‐invasive early prediction of hypoxic‐ischemic injury in asphyxiated neonates	0
Masthead: Proteomics 3'24	0
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Proteomic landscape of primary and metastatic brain tumors for heterogeneity discovery	0
Masthead: Proteomics 3'22	0
Front Cover	0
LC‐MS‐based urine metabolomics analysis of chronic subdural hematoma for biomarker discovery	0
Front Cover	0
Valosin‐containing protein (VCP/p97) is prognostically unfavorable in pediatric AML, and negatively correlates with unfolded protein response proteins IRE1 and GRP78: A report from the Children's Onco	0
Prognostic value of protein biomarkers in liver transplantation: A systematic review	0
Editorial Board: Proteomics 5'22	0
Quantifying Protein Acetylation in Diabetic Nephropathy from Formalin‐Fixed Paraffin‐Embedded Tissue	0
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Protein Network Alterations in G‐CSF Treated Severe Congenital Neutropenia Patients and Beneficial Effects of Oral Health Intervention	0
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Masthead: Proteomics 2'24	0
Front Cover	0
Editorial Board: Proteomics 2–3'21	0
Associations of inflammation‐related proteome with demographic and clinical characteristics of people with HIV in South Africa	0
Masthead: Proteomics 1'22	0
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TMT‐Based Quantitative Proteomic Profiling of Human Esophageal Cancer Cells Reveals the Potential Mechanism and Potential Therapeutic Targets Associated With Radioresistance	0
Front Cover	0
Rare HER2 L796P missense mutation promotes the growth and oncogenic signaling in breast cancer cells	0
Front Cover	0
Analysis of Unfolded Protein Response Activation in Colon Adenocarcinoma Epithelial Cells: A Proteomic Study	0
Potential functionality of Cutibacterium acnes extracellular vesicles in atopic dermatitis and acne vulgaris: A comparative proteomic analysis	0
Editorial Board: Proteomics 6'23	0
Front Cover	0
Editorial Board: Proteomics 5'24	0
Front Cover	0
Editorial Board: Proteomics 5'21	0
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Editorial Board: Proteomics 1'23	0
Masthead: Proteomics 2'23	0
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Understanding LC/MS‐Based Metabolomics: A Detailed Reference for Natural Product Analysis	0
Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	0
Front Cover	0
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Proteomic changes of botulinum neurotoxin injection on muscle growth in children with spastic cerebral palsy	0
Masthead: Proteomics 1'21	0
Quantitative comparison of the renal pelvic urine and bladder urine to examine modifications of the urine proteome by the lower urinary tract	0
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Editorial Board: Proteomics 4'24	0
Parallel accumulation‐serial fragmentation method for in‐depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer	0
Front Cover: Classification of Inflammatory Bowel Disease from Formalin‐Fixed, Paraffin‐Embedded Tissue Biopsies via Imaging Mass Spectrometry	0
Masthead: Proteomics 4'24	0
Inside Front Cover: Evaluation of the Aortopathy in the Ascending Aorta: The Novelty of Using Matrix‐Assisted Laser Desorption/Ionization Imaging	0
Editorial Board: Proteomics 2'24	0
Editorial Board: Proteomics 2'23	0
Front Cover	0
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Front Cover	0
Prospecting Specific Protein Patterns for High Body Mass Index (BMI), Metabolic Syndrome and Type 2 Diabetes in Saliva and Blood Plasma From a Brazilian Population	0
Liver Tissue Proteins Improve the Accuracy of Plasma Proteins as Biomarkers in Diagnosing Metabolic Dysfunction‐Associated Steatohepatitis	0
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Proteomic analysis of extracellular vesicle cargoes mirror the cardioprotective effects of rivaroxaban in patients with venous thromboembolism	0
Front Cover	0