Proteomics Clinical Applications

Article	Citations
Value of Urine Peptides in Assessing Kidney and Cardiovascular Disease	29
Salivary Microbiome Shifts in Response to Periodontal Treatment Outcome	23
Peptides in Plasma, Urine, and Dialysate: Toward Unravelling Renal Peptide Handling	21
Clinical applications of plasma proteomics and peptidomics: Towards precision medicine	20
Untargeted metabolomics of human plasma reveal lipid markers unique to chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis	18
SWATH‐Proteomics of Ibrutinib's Action in Myeloid Leukemia Initiating Mutated G‐CSFR Signaling	16
Plasma biomarkers for systemic inflammation in COVID‐19 survivors	14
Proteomic and Transcriptomic Approaches for Studying Bone Regeneration in Health and Systemically Compromised Conditions	14
Deep Proteomic Insights into the Individual Short‐Term Pellicle Formation on Enamel—An In Situ Pilot Study	13
Clinical Application of Mass Spectrometry‐Based Proteomics in Lung Cancer Early Diagnosis	13
Proteins linked to atherosclerosis and cell proliferation are associated with the shrunken pore syndrome in heart failure patients	11
Proteome Analyses Reveal S100A11, S100P, and RBM25 Are Tumor Biomarkers in Colorectal Cancer	11
Proteomic profiling of human bone from different anatomical sites – A pilot study	10
Deep Proteomic Insights into the Individual Short‐Term Pellicle Formation on Enamel—An In Situ Pilot Study	9
Classification of Inflammatory Bowel Disease from Formalin‐Fixed, Paraffin‐Embedded Tissue Biopsies via Imaging Mass Spectrometry	8
MALDI‐IMS as a Tool to Determine the Myocardial Response to Syndecan‐2‐Selected Mesenchymal Stromal Cell Application in an Experimental Model of Diabetic Cardiomyopathy	8
Is the proteomic composition of the salivary pellicle dependent on the substrate material?	8
Proteomic Analysis Reveals that EPHX1 Contributes to 5‐Fluorouracil Resistance in a Human Hepatocellular Carcinoma Cell Line	8
Pancreatic Tissue Proteomics Unveils Key Proteins, Pathways, and Networks Associated with Type 1 Diabetes	8
Rapid Proteomic Profiling by MALDI‐TOF Mass Spectrometry for Better Brain Tumor Classification	8
Analytical validation of a multi‐protein, serum‐based assay for disease activity assessments in multiple sclerosis	7
Targeted Mass Spectrometry of a Clinically Relevant PSA Variant from Post‐DRE Urines for Quantitation and Genotype Determination	7
Robust subtyping of non‐small cell lung cancer whole sections through MALDI mass spectrometry imaging	7
Quantitative proteomics approach reveals novel biomarkers and pathological mechanism of keloid	7
Plasma proteomics identify potential severity biomarkers from COVID‐19 associated network	7

N‐Glycan profiling of chondrocytes and fibroblast‐like synoviocytes: Towards functional glycomics in osteoarthritis	7
Global Proteomic Analyses of STING‐Positive and ‐Negative Macrophages Reveal STING and Non‐STING Differentially Regulated Cellular and Molecular Pathways	7
Comparing endocervical mucus proteome of humans and rhesus macaques	7
MALDI mass spectrometry imaging unravels organ and amyloid‐type specific peptide signatures in pulmonary and gastrointestinal amyloidosis	6
Detection of recombinant Spike protein in the blood of individuals vaccinated against SARS‐CoV‐2: Possible molecular mechanisms	6
Dysbiosis of the Oral Ecosystem in Severe Congenital Neutropenia Patients	6
Current advances in antibody‐based serum biomarker studies: From protein microarray to phage display	6
A protein microarray‐based serum proteomic investigation reveals distinct autoantibody signature in colorectal cancer	6
Research progress in protein microarrays: Focussing on cancer research	5
Alpha‐Synuclein Dopaminylation Presented in Plasma of Both Healthy Subjects and Parkinson's Disease Patients	5
Proteomic Study Reveals the Involvement of Energy Metabolism in the Fast Antidepressant Effect of (2R, 6R)‐Hydroxy Norketamine	5
Proteomic profiles of Zika virus‐infected placentas bearing fetuses with microcephaly	5
Proteomic analysis identified potential age‐associated prognostic biomarkers in pneumonia‐derived paediatric sepsis	5
Pilot proteomic analysis of cerebrospinal fluid in Alzheimer's disease	5
Integrating SWATH‐MS proteomics and transcriptome analysis to preliminarily identify three DEGs as biomarkers for proliferative diabetic retinopathy	5
Plasma proteomics analysis of adolescent idiopathic scoliosis patients revealed by Quadrupole‐Orbitrap mass spectrometry	5
Proteomics of ZIKV infected amniotic fluids of microcephalic fetuses reveals extracellular matrix and immune system dysregulation	5
Revealing the changes of IgG subclass‐specific N‐glycosylation in colorectal cancer progression by high‐throughput assay	5
Bortezomib is significantly beneficial for de novo pediatric AML patients with low phosphorylation of the NF‐κB subunit RelA	4
Optimization of a lysis method to isolate periplasmic proteins from Gram‐negative bacteria for clinical mass spectrometry	4
Salivary Fingerprinting of Periodontal Disease by Infrared‐ATR Spectroscopy	4
Evaluation of autoantibody signatures in pituitary adenoma patients using human proteome arrays	4
Systematic Optimization of the iMALDI Workflow for the Robust and Straightforward Quantification of Signaling Proteins in Cancer Cells	4
Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	4
Screening of differentially expressed proteins in placentas from patients with late‐onset preeclampsia	4
Cardiomyocyte Proteome Remodeling due to Isoproterenol‐Induced Cardiac Hypertrophy during the Compensated Phase	4
iTRAQ and two‐dimensional‐LC‐MS/MS reveal NAA10 is a potential biomarker in esophageal squamous cell carcinoma	4
Plasma proteome profiling using tandem mass tag labeling technology reveals potential biomarkers for Parkinson's disease: a preliminary study	3
Quantitative proteomics analysis identifies salivary biomarkers for early detection of pregnancy loss in a Singaporean cohort—A pilot study	3
Pilot proteomic study of locally advanced rectal cancer before and after neoadjuvant chemoradiotherapy indicates high metabolic activity in non‐responders' tumor tissue	3
Primary angle closure glaucoma is characterized by altered extracellular matrix homeostasis in the iris	3
Label‐free quantitative proteomics identifies unique proteomes of clinical isolates of the Liverpool Epidemic Strain of Pseudomonas aeruginosa and laboratory strain PAO1	3
Revisiting “‐omics” in Oral Health and Disease	3
Proteoglycans in breast cancer, identification and characterization by LC‐MS/MS assisted proteomics approach: A review	3
Proteomic study of apheresis platelets made HLA class I deficient for transfusion of refractory patients	3
Mass spectrometry‐based proteomic analysis of the effect of storage temperature on non‐invasively collected samples of human stratum corneum	3
A proteomic investigation of isogenic radiation resistant prostate cancer cell lines	3
Differential Protein Expression between Cystic and Solid Vestibular Schwannoma Using Tandem Mass Tag‐Based Quantitative Proteomic Analysis	3
Evaluation of the Aortopathy in the Ascending Aorta: The Novelty of Using Matrix‐Assisted Laser Desorption/Ionization Imaging	3
Protein profiles in plasma: Development from infancy to 5 years of age	3
Placental and plasma early predictive biomarkers for gestational diabetes mellitus	3
HIV and Proteomics: What We Have Learned from High Throughput Studies	3
Development of a protein microarray for profiling circulating autoantibodies in human diseases	3
Tandem mass tag‐based quantitative proteomic analysis of cervical cancer	3
Plasma nontargeted peptidomics discovers potential biomarkers for major depressive disorder	2
Measuring fucosylated alpha‐fetoprotein in hepatocellular carcinoma: A comparison of μTAS and parallel reaction monitoring	2
Proteomic profiling of idiopathic Parkinson's disease primary patient cells by SWATH‐MS	2
A comparative study of data‐dependent acquisition and data‐independent acquisition in proteomics analysis of clinical lung cancer tissues constrained by blood contamination	2
Protein Analysis of the TGFBIR124H Mouse Model Gives Insight into Phenotype Development of Granular Corneal Dystrophy	2
Proteomic analysis of human articular cartilage unravels the dyscoagulation in osteoarthritis and the potential value of serpinA5 as a biomarker for osteoarthritis	2

The Influence of Blood Collection Tubes in Biomarkers’ Screening by Mass Spectrometry	2
BoxCar increases the depth and reproducibility of diabetic urinary proteome analysis	2
PolyBoost: An enhanced genomic variant classifier using extreme gradient boosting	2
Qualitative and quantitative proteomic and metaproteomic analyses of healthy human urine sediment	2
Lipopolysaccharide‐regulated secretion of soluble and vesicle‐based proteins from a panel of colorectal cancer cell lines	2
Human peripheral blood mononuclear cells as a valuable source of disease‐related biomarkers: Evidence from comparative proteomics studies	2
Are mass spectrometry imaging‐based diagnostics becoming reality?	2
Association analysis of hepatocellular carcinoma‐related hub proteins and hub genes	2
Quantitative proteomic analysis of bronchoalveolar lavage fluids from patients with small cell lung cancers	2
Advances in plasma proteomics: Moving from technology to precision medicine	2
The crosstalking of lactate‐Histone lactylation and tumor	2
Proteomics and phosphoproteomics analysis of vitreous in idiopathic epiretinal membrane patients	2
Systematic evaluation of plasma signaling cascades by functional proteomics approaches: SARS‐CoV‐2 infection as model	2
Investigating potential protein markers of cardiovascular disease in children with type 1 diabetes mellitus	2
Exploration of quantitative site‐specific serum O‐glycoproteomics with isobaric labeling for the discovery of putative O‐glycoprotein biomarkers	2
Apolipoprotein Proteomic Profiling for the Prediction of Cardiovascular Death in Patients with Heart Failure	2
Proteomics reveals unique plasma signatures in constitutional thinness	2
Identification of a serum biomarker signature associated with metastatic prostate cancer	2
Descriptive proteomics of paired human vocal fold and buccal mucosa tissue	2
Proteomic discovery in sickle cell disease: Elevated neurogranin levels in children with sickle cell disease	2
Exosomal proteins as a source of biomarkers in colon cancer‐derived peritoneal carcinomatosis – A pilot study	1
Quantitative Proteome of Infant Stenotic Ureters Reveals Extracellular Matrix Organization and Oxidative Stress Dysregulation Underlying Ureteropelvic Junction Obstruction	1
Isoform 1 of Fibrinogen Alpha Chain Precursor is a Potential Biomarker for Steroid‐Induced Osteonecrosis of the Femoral Head	1
Proteomics of azoospermia: Towards the discovery of reliable markers for non‐invasive diagnosis	1
Advances in plasma proteomics: Call for papers for an upcoming special issue	1
Optimised plasma sample preparation and LC‐MS analysis to support large‐scale proteomic analysis of clinical trial specimens: Application to the Fenofibrate Intervention and Event Lowering in Diabetes	1
The functional roles of m6A modification in prostate cancer	1
Screening of novel biomarkers for acute kidney transplant rejection using DIA‐MS based proteomics	1
Profiling of proteome changes in plasma of HIV‐infected patients receiving antiretroviral therapy	1
Proteomic and lipidomic biomarkers in the diagnosis and progression of inflammatory bowel disease – a review	1
Identification of differentially expressed proteins between fused and open sutures in sagittal nonsyndromic craniosynostosis during suture development by quantitative proteomic analysis	1
Realm of proteomics in breast cancer management and drug repurposing to alleviate intricacies of treatment	1
Ex vivo glucocorticoid‐induced secreted proteome approach for discovery of glucocorticoid‐responsive proteins in human serum	1
Bioinformatic Identification of a Breast‐Specific Transcript Profile	1
Discovery and validation of serum glycoprotein biomarkers for high grade serous ovarian cancer	1
Comparative proteomics of saliva of healthy and gingivitis individuals from Rio de Janeiro	1
Intraoperative plasma proteomic changes in cardiac surgery: In search of biomarkers of post‐operative delirium	1
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Amniotic fluid metabolomics identifies impairment of glycerophospholipid and amino acid metabolism during congenital Zika syndrome development	1
Phosphoproteomics analysis of diabetic cardiomyopathy in aging‐accelerated mice and effects of D‐pinitol	1
Serum proteomics profiling identifies a preliminary signature for the diagnosis of early‐stage lung cancer	1
Identification of a potential prognostic plasma biomarker of acute ischemic stroke via untargeted LC‐MS metabolomics	1
Urinary collagen peptides: Source of markers for bone metabolic processes in kidney transplant recipients	1
Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock	1
Back Cover: HIV and Proteomics: What We Have Learned from High Throughput Studies	1
Editorial Board: Proteomics 5'23	0
Editorial Board: Proteomics 6'20	0
Valosin‐containing protein (VCP/p97) is prognostically unfavorable in pediatric AML, and negatively correlates with unfolded protein response proteins IRE1 and GRP78: A report from the Children's Onco	0
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“Hide and seek”: Misleading transferrin variants in PMM2‐CDG complicate diagnostics	0
Label‐free quantitative proteomic and phosphoproteomic analyses of renal biopsy tissues in membranous nephropathy	0
Two effective models based on comprehensive lipidomics and metabolomics can distinguish BC versus HCs, and TNBC versus non‐TNBC	0
Mass spectrometry‐based proteomic profiling of sonicate fluid differentiates Staphylococcus aureus periprosthetic joint infection from non‐infectious failure: A pilot study	0
Editorial Board: Proteomics 3'20	0
Editorial Board: Proteomics 2–3'21	0
Cerebrospinal fluid proteins in idiopathic intracranial hypertension: An exploratory SWATH proteomics analysis	0
Front Cover: Identification of New Peptide Biomarkers for Bacterial Bloodstream Infection	0
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Masthead: Proteomics 6'22	0
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Masthead: Proteomics 1'24	0
Masthead: Proteomics 5'20	0
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Masthead: Proteomics 1'21	0
Editorial Board: Proteomics 2'22	0
Masthead: Proteomics 5'23	0
Prognostic value of protein biomarkers in liver transplantation: A systematic review	0
Front Cover: Revisiting “‐omics” in Oral Health and Disease	0
Editorial Board: Proteomics 4'20	0
Editorial Board: Proteomics 6'22	0
Editorial Board: Proteomics 1'22	0
Editorial Board: Proteomics 4'21	0
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Protein sample preparation for tissue distribution study	0
Masthead: Proteomics 6'21	0
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Integrated plasma proteomics and N‐glycoproteomics reveals alterations in the N‐glycosylation in Chinese hepatocellular carcinoma patients	0

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Masthead: Proteomics 2'23	0
Masthead: Proteomics 5'21	0
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Spindle apparatus coiled‐coil protein 1 (SPDL1) serves as a novel prognostic biomarker in triple‐negative breast cancer	0
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Editorial Board: Proteomics 2'23	0
Editorial Board: Proteomics 3'22	0
Front Cover	0
Masthead: Proteomics 3'23	0
LC‐MS‐based urine metabolomics analysis of chronic subdural hematoma for biomarker discovery	0
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Proteomics and bioinformatics investigations to improve serological diagnosis of canine brucellosis	0
Integrative analysis of transcriptome and proteome profiles in primary and recurrent glioblastoma	0
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Masthead: Proteomics 5'22	0
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Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	0
Integration of the cancer cell secretome and transcriptome reveals potential noninvasive diagnostic markers for bladder cancer	0
Editorial Board: Proteomics 4'23	0
Front Cover: Registration of Image Modalities for Analyses of Tissue Samples Using 3D Image Modelling	0
Design of experiments approach for systematic optimization of a single‐shot diaPASEF plasma proteomics workflow applicable for high‐throughput	0
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Rare HER2 L796P missense mutation promotes the growth and oncogenic signaling in breast cancer cells	0
Front Cover: Systematic Optimization of the iMALDI Workflow for the Robust and Straightforward Quantification of Signaling Proteins in Cancer Cells	0
Editorial Board: Proteomics 1'21	0
Masthead: Proteomics 2'20	0
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Subcellular proteomics insights into Alzheimer's disease development	0
Identification of novel biomarkers for frailty diagnosis via serum amino acids metabolomic analysis using UPLC‐MS/MS	0
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Masthead: Proteomics 4'20	0
Integrated glycomics strategy for galactosylated‐N‐glycans recognized by Bandeiraea Simplicifolia Lectin I in salivary proteins associated with lung cancer	0
Quantitative proteomics analysis reveals novel insights into mechanisms of action of disulfiram (DSF)	0
Parallel accumulation‐serial fragmentation method for in‐depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer	0
Proteomic analysis of extracellular vesicle cargoes mirror the cardioprotective effects of rivaroxaban in patients with venous thromboembolism	0
Front Cover: Classification of Inflammatory Bowel Disease from Formalin‐Fixed, Paraffin‐Embedded Tissue Biopsies via Imaging Mass Spectrometry	0
Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer‐like environment	0
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Masthead: Proteomics 2–3'21	0
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Masthead: Proteomics 1'23	0
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Comprehensive characterization of protein modifications using mass spectrometry and dry blood spots	0
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Masthead: Proteomics 4'23	0
Masthead: Proteomics 6'20	0
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Associations of inflammation‐related proteome with demographic and clinical characteristics of people with HIV in South Africa	0
Quantitative comparison of the renal pelvic urine and bladder urine to examine modifications of the urine proteome by the lower urinary tract	0
Editorial Board: Proteomics 6'21	0
Editorial Board: Proteomics 1'23	0
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Proteomics in Kidney and Cardiovascular Clinical Research	0
Front Cover	0
Editorial Board: Proteomics 1'24	0
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Editorial Board: Proteomics 5'22	0
A comparative proteomic analysis for non‐invasive early prediction of hypoxic‐ischemic injury in asphyxiated neonates	0
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Masthead: Proteomics 6'23	0
Plasma proteome analysis and validation of patients with community‐acquired pneumonia: A cohort study	0
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Identification of potential extracellular vesicle protein markers altered in osteosarcoma from public databases	0
Front Cover: Cardiomyocyte Proteome Remodeling due to Isoproterenol‐Induced Cardiac Hypertrophy during the Compensated Phase	0
Editorial Board: Proteomics 6'23	0
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Inside Front Cover: Evaluation of the Aortopathy in the Ascending Aorta: The Novelty of Using Matrix‐Assisted Laser Desorption/Ionization Imaging	0
Biomarkers for the central nervous system complications of sickle cell disease: are we there yet?	0
Editorial Board: Proteomics 2'20	0
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Front Cover	0
Immunoproteomic Identification of Noncarbohydrate Antigens Eliciting Graft‐Specific Adaptive Immune Responses in Patients with Bovine Pericardial Bioprosthetic Heart Valves	0
Masthead: Proteomics 1'22	0
Fast and straightforward simultaneous quantification of multiple apolipoproteins in human serum on a high‐throughput LC‐MS/MS platform	0
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Masthead: Proteomics 4'21	0
Editorial Board: Proteomics 5'20	0
Tape stripped stratum corneum samples are suitable for diagnosis and comprehensive proteomic investigation in mycosis fungoides	0
Editorial Board: Proteomics 5'21	0
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Masthead: Proteomics 3'20	0
Editorial Board: Proteomics 3'23	0
Proteomic landscape of primary and metastatic brain tumors for heterogeneity discovery	0
Editorial Board: Proteomics 4'22	0
Proteomics profiling of kidney brush border membrane from rats using LC‐MS/MS analysis	0
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