Mobile DNA

Papers
(The median citation count of Mobile DNA is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-02-01 to 2025-02-01.)
ArticleCitations
The role of Smarcad1 in retroviral repression in mouse embryonic stem cells71
Software evaluation for de novo detection of transposons50
The IS6 family, a clinically important group of insertion sequences including IS2636
SINE jumping contributes to large-scale polymorphisms in the pig genomes35
The structural diversity of CACTA transposons in genomes of Chenopodium (Amaranthaceae, Caryophyllales) species: specific traits and comparison with the similar elements of angiosperms29
Recurrent co-domestication of PIF/Harbinger transposable element proteins in insects23
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea21
Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity21
CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes20
RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats20
Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes18
Teleost genomic repeat landscapes in light of diversification rates and ecology17
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder16
International congress on transposable elements (ICTE 2024) in Saint Malo: breaking down transposon waves and their impact12
Themes and variations on piRNA-guided transposon control10
Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas910
Correction: Transposon-derived introns as an element shaping the structure of eukaryotic genomes9
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats9
The coevolution between APOBEC3 and retrotransposons in primates8
Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species8
Evolution of Einkorn wheat centromeres is driven by the mutualistic interplay of two LTR retrotransposons8
Response from Varani et al. to “Comment on ‘the IS6 family, a clinically important group of insertion sequences including IS26’ by Ruth M. Hall”8
Identification of transposable element families from pangenome polymorphisms8
Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations8
Generalized nuclear localization of retroelement transcripts7
An intronic LINE-1 regulates IFNAR1 expression in human immune cells7
A beginner’s guide to manual curation of transposable elements7
Internal initiation of reverse transcription in a Penelope-like retrotransposon6
Differential regulation of transposable elements (TEs) during the murine submandibular gland development6
Accelerating de novo SINE annotation in plant and animal genomes6
Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene5
Transposable elements as essential elements in the control of gene expression5
Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers5
Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomo5
SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution4
Multiple horizontal transfers of a Helitron transposon associated with a parasitoid wasp4
Correction to: Upregulation of selected HERVW loci in multiple sclerosis4
Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog4
SINE-derived satellites in scaled reptiles4
The fifth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements4
Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria3
Methylation of rRNA as a host defense against rampant group II intron retrotransposition3
Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast3
KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences3
Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Ca3
Genomic properties of variably methylated retrotransposons in mouse3
Proceedings of the inaugural Dark Genome Symposium: November 20222
Retro-miRs: novel and functional miRNAs originating from mRNA retrotransposition2
Characterization of transposable elements within the Bemisia tabaci species complex2
Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans2
Upregulation of selected HERVW loci in multiple sclerosis2
Correction: A beginner’s guide to manual curation of transposable elements2
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs2
SETMAR, a case of primate co-opted genes: towards new perspectives2
A systematic screen for co-option of transposable elements across the fungal kingdom2
Eco-evolutionary significance of domesticated retroelements in microbial genomes2
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