Mobile DNA

Papers
(The median citation count of Mobile DNA is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
The Dfam community resource of transposable element families, sequence models, and genome annotations380
The IS6 family, a clinically important group of insertion sequences including IS2671
Transposable element-derived sequences in vertebrate development51
A beginner’s guide to manual curation of transposable elements50
Unbiased profiling of CRISPR RNA-guided transposition products by long-read sequencing36
Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa35
Transposable elements as essential elements in the control of gene expression29
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs23
KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences21
SINE jumping contributes to large-scale polymorphisms in the pig genomes21
Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus20
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder20
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation18
Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals17
Software evaluation for de novo detection of transposons17
Genomic properties of variably methylated retrotransposons in mouse16
Transposable element subfamily annotation has a reproducibility problem14
Association analysis of repetitive elements and R-loop formation across species14
The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis12
Eco-evolutionary significance of domesticated retroelements in microbial genomes10
Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas910
Teleost genomic repeat landscapes in light of diversification rates and ecology9
T3E: a tool for characterising the epigenetic profile of transposable elements using ChIP-seq data9
The unusual structure of the PiggyMac cysteine-rich domain reveals zinc finger diversity in PiggyBac-related transposases8
Differential regulation of transposable elements (TEs) during the murine submandibular gland development8
A 192 bp ERV fragment insertion in the first intron of porcine TLR6 may act as an enhancer associated with the increased expressions of TLR6 and TLR18
Themes and variations on piRNA-guided transposon control8
Upregulation of selected HERVW loci in multiple sclerosis8
melRNA-seq for Expression Analysis of SINE RNAs and Other Medium-Length Non-Coding RNAs7
Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria7
Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity7
Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans6
Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen6
An intronic LINE-1 regulates IFNAR1 expression in human immune cells6
Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element 6
Expression of L1 retrotransposons in granulocytes from patients with active systemic lupus erythematosus5
Correction: A beginner’s guide to manual curation of transposable elements5
Characterisation of mobile genetic elements in Mycoplasma hominis with the description of ICEHo-II, a variant mycoplasma integrative and conjugative element5
TE Density: a tool to investigate the biology of transposable elements5
Characterization of transposable elements within the Bemisia tabaci species complex5
Comment on “the IS6 family, a clinically important group of insertion sequences including IS26” by Varani and co-authors4
SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution4
Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells4
Recurrent co-domestication of PIF/Harbinger transposable element proteins in insects4
RNA sensor MDA5 suppresses LINE-1 retrotransposition by regulating the promoter activity of LINE-1 5′-UTR4
Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria4
SETMAR, a case of primate co-opted genes: towards new perspectives3
Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species3
Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Ca3
CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes3
Mobility of mPing and its associated elements is regulated by both internal and terminal sequences3
Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers3
CRISPR-TE: a web-based tool to generate single guide RNAs targeting transposable elements2
Population analysis of retrotransposons in giraffe genomes supports RTE decline and widespread LINE1 activity in Giraffidae2
Proceedings of the inaugural Dark Genome Symposium: November 20222
Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene2
SeqURE – a new copy-capture based method for sequencing of unknown Retroposition events2
Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation2
Methylation of rRNA as a host defense against rampant group II intron retrotransposition2
Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea2
The association of group IIB intron with integrons in hypersaline environments2
THE1B may have no role in human pregnancy due to ZNF430-mediated silencing2
Multiple horizontal transfers of a Helitron transposon associated with a parasitoid wasp2
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