OOIR: Observatory of International Research

Papers

(The median citation count of Mobile DNA is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
The Dfam community resource of transposable element families, sequence models, and genome annotations	263
Twenty years of transposable element analysis in the Arabidopsis thaliana genome	67
The IS6 family, a clinically important group of insertion sequences including IS26	58
Transposable elements in Drosophila	54
Transposable element-derived sequences in vertebrate development	46
Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates	42
A beginner’s guide to manual curation of transposable elements	36
The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families	31
Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements	31
Unbiased profiling of CRISPR RNA-guided transposition products by long-read sequencing	31
Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa	29
Transposable element abundance correlates with mode of transmission in microsporidian parasites	21
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains	20
SINE jumping contributes to large-scale polymorphisms in the pig genomes	20
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs	20
Identification of RAG-like transposons in protostomes suggests their ancient bilaterian origin	19
KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences	19
Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus	17
Diverse transposable element landscapes in pathogenic and nonpathogenic yeast models: the value of a comparative perspective	16
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder	16
Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals	15
Genomic properties of variably methylated retrotransposons in mouse	15
Association analysis of repetitive elements and R-loop formation across species	14
Transposons and satellite DNA: on the origin of the major satellite DNA family in the Chenopodium genome	13
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation	12

Identification and characterisation of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in chicken whole genome sequencing data	12
Transposable element subfamily annotation has a reproducibility problem	12
Transposable elements as essential elements in the control of gene expression	11
Software evaluation for de novo detection of transposons	11
The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis	9
Eco-evolutionary significance of domesticated retroelements in microbial genomes	7
Differential regulation of transposable elements (TEs) during the murine submandibular gland development	7
A 192 bp ERV fragment insertion in the first intron of porcine TLR6 may act as an enhancer associated with the increased expressions of TLR6 and TLR1	7
The unusual structure of the PiggyMac cysteine-rich domain reveals zinc finger diversity in PiggyBac-related transposases	6
Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs	6
melRNA-seq for Expression Analysis of SINE RNAs and Other Medium-Length Non-Coding RNAs	6
Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element	5
Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity	5
Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria	5
Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9	5
AcademH, a lineage of Academ DNA transposons encoding helicase found in animals and fungi	5
T3E: a tool for characterising the epigenetic profile of transposable elements using ChIP-seq data	4
Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons	4
Correction: A beginner’s guide to manual curation of transposable elements	4
RNA sensor MDA5 suppresses LINE-1 retrotransposition by regulating the promoter activity of LINE-1 5′-UTR	4
Characterisation of mobile genetic elements in Mycoplasma hominis with the description of ICEHo-II, a variant mycoplasma integrative and conjugative element	4
Characterization of transposable elements within the Bemisia tabaci species complex	4
IS982 and kin: new insights into an old IS family	4
TE Density: a tool to investigate the biology of transposable elements	4
Deep sequencing reveals new roles for MuB in transposition immunity and target-capture, and redefines the insular Ter region of E. coli	4
Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans	4
Expression of L1 retrotransposons in granulocytes from patients with active systemic lupus erythematosus	3
Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells	3