Genome Biology and Evolution

Papers
(The TQCC of Genome Biology and Evolution is 8. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination99
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing91
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-289
The Genomic Architecture and Evolutionary Fates of Supergenes71
Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes69
Effects of Synonymous Mutations beyond Codon Bias: The Evidence for Adaptive Synonymous Substitutions from Microbial Evolution Experiments65
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics55
Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria53
The Iron-Responsive Genome of the Chiton Acanthopleura granulata47
Long-Read Genome Assemblies Reveal Extraordinary Variation in the Number and Structure of MHC Loci in Birds42
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics40
Deep Learning in Population Genetics39
Causes and Consequences of Purifying Selection on SARS-CoV-238
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis37
Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant PathogenVerticillium dahliae33
Rampant Genome-Wide Admixture across theHeliconiusRadiation33
On the prospect of achieving accurate joint estimation of selection with population history33
Sharp Increase of Problematic Mitogenomes of Birds: Causes, Consequences, and Remedies32
ADAR Editing in Viruses: An Evolutionary Force to Reckon with32
The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity31
CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation30
Coxiella burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors30
Gene Duplications Are At Least 50 Times Less Frequent than Gene Transfers in Prokaryotic Genomes30
Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction30
A Practical Guide to Design and Assess a Phylogenomic Study30
Step-by-Step Evolution of Telomeres: Lessons from Yeasts29
Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral–Algae Symbioses29
Transposable Element Mobilization in Interspecific Yeast Hybrids29
How Can We Resolve Lewontin’s Paradox?29
Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics28
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly27
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes27
A De Novo Transcriptome Assembly ofCeratopteris richardiiProvides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants27
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses26
Not Frozen in the Ice: Large and Dynamic Rearrangements in the Mitochondrial Genomes of the Antarctic Fish25
Evolutionary Perspectives on Germline-Restricted Chromosomes in Flies (Diptera)25
The Population-Specific Impact of Neandertal Introgression on Human Disease25
Genomic Evidence of an Ancient East Asian Divergence Event in Wild Saccharomyces cerevisiae24
The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies24
The Genome of the Poecilogonous Annelid Streblospio benedicti24
A High-Quality Reference Genome for a Parasitic Bivalve with Doubly Uniparental Inheritance (Bivalvia: Unionida)24
Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis24
In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus23
Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity23
Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome23
sangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R23
Mutational Signatures of Replication Timing and Epigenetic Modification Persist through the Global Divergence of Mutation Spectra across the Great Ape Phylogeny23
Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations22
The Evolutionary Origins of Extreme Halophilic Archaeal Lineages22
Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development22
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 191821
The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders21
Inferring the Deep Past from Molecular Data21
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes21
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree21
Are Geckos Special in Sex Determination? Independently Evolved Differentiated ZZ/ZW Sex Chromosomes in Carphodactylid Geckos21
Fitness Effects of Mutations: An Assessment of PROVEAN Predictions Using Mutation Accumulation Data21
A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family21
Inferring Balancing Selection From Genome-Scale Data21
At the Root of T2R Gene Evolution: Recognition Profiles of Coelacanth and Zebrafish Bitter Receptors20
Comparative Population Genetics in the Human Gut Microbiome20
A Chromosome—Level Genome Assembly of the Spotted Scat (Scatophagus argus)20
Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus20
Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa20
The Genome Assembly and Annotation of the Apollo Butterfly Parnassius apollo, a Flagship Species for Conservation Biology20
The Presence of Ancient Core Genes Reveals Endogenization from Diverse Viral Ancestors in Parasitoid Wasps20
Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea19
A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria19
Rapid Spread of Mutant Alleles in Worldwide SARS-CoV-2 Strains Revealed by Genome-Wide Single Nucleotide Polymorphism and Variation Analysis19
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation19
Selective Sweeps in a Nutshell: The Genomic Footprint of Rapid Insecticide Resistance Evolution in the Almond Agroecosystem19
Read between the Lines: Diversity of Nontranslational Selection Pressures on Local Codon Usage19
Evolution of the Insect PPK Gene Family19
Enrichment of Non-B-Form DNA at D. melanogaster Centromeres18
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects18
Uniparental Genome Elimination in Australian Carp Gudgeons18
Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States18
Reconstructing the History of Variation in Effective Population Size along Phylogenies18
A Minimally Morphologically Destructive Approach for DNA Retrieval and Whole-Genome Shotgun Sequencing of Pinned Historic Dipteran Vector Species18
Plastome Structural Evolution and Homoplastic Inversions in Neo-Astragalus (Fabaceae)17
Nanopore Amplicon Sequencing Reveals Molecular Convergence and Local Adaptation of Rhodopsin in Great Lakes Salmonids17
Evolutionary Genetics and Admixture in African Populations17
Pervasive Mitonuclear Coadaptation Underlies Fast Development in Interpopulation Hybrids of a Marine Crustacean17
Evidence for a Syncytial Origin of Eukaryotes from Ancestral State Reconstruction17
Comparative Genomics of Strictly Vertically Transmitted, Feminizing Microsporidia Endosymbionts of Amphipod Crustaceans17
Synteny-Based Genome Assembly for 16 Species ofHeliconiusButterflies, and an Assessment of Structural Variation across the Genus17
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insect17
Phylogenomics of Opsin Genes in Diptera Reveals Lineage-Specific Events and Contrasting Evolutionary Dynamics in Anopheles and Drosophila17
Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture17
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range E17
Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages17
Unbiased Subgenome Evolution in Allotetraploid Species ofEphedraand Its Implications for the Evolution of Large Genomes in Gymnosperms17
Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins17
Origin and Evolution of the Cannabinoid Oxidocyclase Gene Family17
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae17
Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked across Lepidoptera?16
Chemoreceptor Diversity in Apoid Wasps and Its Reduction during the Evolution of the Pollen-Collecting Lifestyle of Bees (Hymenoptera: Apoidea)16
Metagenomics Shines Light on the Evolution of “Sunscreen” Pigment Metabolism in theTeloschistales(Lichen-Forming Ascomycota)16
Genome-Wide Association and Selective Sweep Studies Reveal the Complex Genetic Architecture of DMI Fungicide Resistance inCercospora beticola16
The Promise of Inferring the Past Using the Ancestral Recombination Graph16
Genic Selection Within Prokaryotic Pangenomes16
Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles16
Diversity and Evolution of Pigment Types in MarineSynechococcusCyanobacteria16
Culture Volume Influences the Dynamics of Adaptation under Long-Term Stationary Phase16
Ancestral State Reconstructions Trace Mitochondria But Not Phagocytosis to the Last Eukaryotic Common Ancestor16
Analysis of Paralogons, Origin of the Vertebrate Karyotype, and Ancient Chromosomes Retained in Extant Species16
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution16
New Insights into Mitochondrial–Nuclear Interactions Revealed through Analysis of Small RNAs15
The Evolution of Interdependence in a Four-Way Mealybug Symbiosis15
Sequence of aCoxiellaEndosymbiont of the TickAmblyomma nuttalliSuggests a Pattern of Convergent Genome Reduction in theCoxiellaGenus15
Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations15
High-Resolution Estimates of Crossover and Noncrossover Recombination from a Captive Baboon Colony15
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae)15
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades15
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees14
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors14
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution14
How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome14
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci14
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity14
The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes14
Phylogenomic Analyses Show Repeated Evolution of Hypertrophied Lips Among Lake Malawi Cichlid Fishes14
Evolutionary Plasticity of Mating-Type Determination Mechanisms inParamecium aureliaSibling Species14
Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia14
Genome-Wide Epigenetic Signatures of Adaptive Developmental Plasticity in the Andes14
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species (Gila robustaComplex) in the Colorado River14
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka FishOryzias latipes14
Mitogenomics and mitochondrial gene phylogeny decipher the evolution ofSaccharomycotinayeasts14
Mitochondrial Phylogenomics of Cuscuta (Convolvulaceae) Reveals a Potentially Functional Horizontal Gene Transfer from the Host13
Evolution of recombination landscapes in diverging populations of bread wheat13
Evolving Perspective on the Origin and Diversification of Cellular Life and the Virosphere13
Coordinated Gene Expression and Chromatin Regulation during Hydra Head Regeneration13
Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology13
Adaptive Potential of Epigenetic Switching During Adaptation to Fluctuating Environments13
A New Hope: A Hermaphroditic Nematode Enables Analysis of a Recent Whole Genome Duplication Event13
nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over13
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny13
Genetic Adaptation in New York City Rats13
Hybridization Dynamics and Extensive Introgression in theDaphnia longispinaSpecies Complex: New Insights from a High-QualityDaphnia galeataReference Genome13
Bidirectional Introgression between Mus musculus domesticus and Mus spretus13
Metabolic Adaptations to Marine Environments: Molecular Diversity and Evolution of Ovothiol Biosynthesis in Bacteria12
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats12
A Draft Genome Assembly ofCulex pipiens pallens(Diptera: Culicidae) Using PacBio Sequencing12
Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication12
Large Genetic Diversity and Strong Positive Selection in F-Box and GPCR Genes among the Wild Isolates of Caenorhabditis elegans12
Mitochondrial Genome Evolution in Pelagophyte Algae12
Multiple Losses of MSH1, Gain of mtMutS, and Other Changes in the MutS Family of DNA Repair Proteins in Animals12
Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina12
Population Genomics of the Maize PathogenUstilago maydis: Demographic History and Role of Virulence Clusters in Adaptation12
Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents12
Genomic Insights into Genetic Diploidization in the Homosporous Fern Adiantum nelumboides12
Maximum SNP FST Outperforms Full-Window Statistics for Detecting Soft Sweeps in Local Adaptation12
High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady ButterflyVanessa cardui12
Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System12
Genome Mining and Evolutionary Analysis Reveal Diverse Type III Polyketide Synthase Pathways in Cyanobacteria12
Cryogenian Origins of Multicellularity in Archaeplastida12
DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows12
De novoAssembly and Comparative Analyses of Mitochondrial Genomes in Piperales12
Mutational Pressure Drives Differential Genome Conservation in Two Bacterial Endosymbionts of Sap-Feeding Insects12
The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves:Certhia americana)12
Sexual Dimorphism through the Lens of Genome Manipulation, Forward Genetics, and Spatiotemporal Sequencing11
Demographic History of the Brown Bear (Ursus arctos) on Hokkaido Island, Japan, Based on Whole-Genomic Sequence Analysis11
A long-term conserved satellite DNA that remains unexpanded in several genomes of Characiformes fish is actively transcribed11
Between Interactions and Aggregates: The PolyQ Balance11
The Rad9–Rad1–Hus1 DNA Repair Clamp is Found in Microsporidia11
The Relationship between the Misfolding Avoidance Hypothesis and Protein Evolutionary Rates in the Light of Empirical Evidence11
The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution inPopulus trichocarpa11
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages11
Utilization of Cobalamin Is Ubiquitous in Early-Branching Fungal Phyla11
Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors11
A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size11
What We Talk About When We Talk About “Junk DNA”11
Eye-Transcriptome and Genome-Wide Sequencing for Scolecophidia: Implications for Inferring the Visual System of the Ancestral Snake11
Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk11
Genomic Signature of Shifts in Selection and Alkaline Adaptation in Highland Fish11
Gene Transfer Agents in Bacterial Endosymbionts of Microbial Eukaryotes11
Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism11
De Novo Genome Assembly and Annotation of an Andean Caddisfly, Atopsyche davidsoni Sykora, 1991, a Model for Genome Research of High-Elevation Adaptations11
A Naturally Heteroplasmic Clam Provides Clues about the Effects of Genetic Bottleneck on Paternal mtDNA11
Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes11
The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes11
Heterogeneous Mutation Rates and Spectra in Yeast Hybrids11
Complete Genome Sequencing of a NovelGloeobacterSpecies from a Waterfall Cave in Mexico11
Rapid Evolution of Complete Dosage Compensation in Poecilia11
Structural Plastome Evolution in Holoparasitic Hydnoraceae with Special Focus on Inverted and Direct Repeats11
The Evolutionary Constraints on Angiosperm Chloroplast Adaptation10
Genomics of Diversification of Pseudomonas aeruginosa in Cystic Fibrosis Lung-like Conditions10
Transcriptomic Signatures of Ageing Vary in Solitary and Social Forms of an Orchid Bee10
Synteny Identifies Reliable Orthologs for Phylogenomics and Comparative Genomics of the Brassicaceae10
Assessing Rapid Relaxed-Clock Methods for Phylogenomic Dating10
Horizontal Transfer of Microbial Toxin Genes to Gall Midge Genomes10
A Chromosome-Scale Hybrid Genome Assembly of the Extinct Tasmanian Tiger (Thylacinus cynocephalus)10
Candidates for Balancing Selection inLeishmania donovaniComplex Parasites10
Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell’s and Gray-Cheeked Thrushes (Aves:Catharus bicknelliandCatharus minimus)10
Bacterial adaptation by a transposition burst of an invading IS element10
Chromosome-scale Genome Assembly of the Yellow Nutsedge (Cyperus esculentus)10
Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure10
Epigenetic and Genetic Population Structure is Coupled in a Marine Invertebrate10
Examination of Gene Loss in the DNA Mismatch Repair Pathway and Its Mutational Consequences in a Fungal Phylum10
Challenges Faced by Highly Polyploid Bacteria with Limits on DNA Inheritance10
Chromosome-level Assembly, Dosage Compensation and Sex-biased Gene Expression in the Small Brown Planthopper,Laodelphax striatellus10
Comparative Analysis of Mitochondrial Genomes in Gryllidea (Insecta: Orthoptera): Implications for Adaptive Evolution in Ant-Loving Crickets10
The Origin and Evolution of Antistasin-like Proteins in Leeches (Hirudinida, Clitellata)10
An Adagio for Viruses, Played Out on Ancient DNA10
Local Adaptation and the Evolution of Genome Architecture in Threespine Stickleback10
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity10
Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis onColtricia10
Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens9
Comparative Genomics Suggests a Taxonomic Revision of the Staphylococcus cohnii Species Complex9
Evolutionary Dynamics of Asexual Hypermutators Adapting to a Novel Environment9
Genome Size Reduction and Transposon Activity Impact tRNA Gene Diversity While Ensuring Translational Stability in Birds9
Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes9
Contrasting Genomic Evolution Between Domesticated and WildKluyveromyces lactisYeast Populations9
Nucleotide Usage Biases Distort Inferences of the Species Tree9
The Genome of the Margined White Butterfly (Pieris macdunnoughii): Sex Chromosome Insights and the Power of Polishing with PoolSeq Data9
Tracing the Evolution of Human Gene Regulation and Its Association with Shifts in Environment9
Developing an Appropriate Evolutionary Baseline Model for the Study of Human Cytomegalovirus9
Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot “Djulis” (Chenopodium formosanum)9
Chromosome-Scale Genome Assembly and Annotation of Allotetraploid Annual Bluegrass (Poa annua L.)9
A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly9
Concurrent Evolution of Antiaging Gene Duplications and Cellular Phenotypes in Long-Lived Turtles9
Gene Structure-Based Homology Search Identifies Highly Divergent Putative Effector Gene Family9
Systematic Exploration of SARS-CoV-2 Adaptation to Vero E6, Vero E6/TMPRSS2, and Calu-3 Cells9
Single-Cell RNA Sequencing Reveals Microevolution of the Stickleback Immune System9
Genomic Analyses Unveil Helmeted Guinea Fowl (Numida meleagris) Domestication in West Africa9
Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees9
De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome9
Long-read Sequencing Data Reveals Dynamic Evolution of Mitochondrial Genome Size and the Phylogenetic Utility of Mitochondrial DNA in Hercules Beetles (Dynastes; Scarabaeidae)9
Genome-Wide Allele-Specific Expression in Obligately AsexualDaphnia pulexand the Implications for the Genetic Basis of Asexuality9
The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae9
Pleiotropic Enhancers are Ubiquitous Regulatory Elements in the Human Genome9
Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)9
The Missing Expression Level–Evolutionary Rate Anticorrelation in Viruses Does Not Support Protein Function as a Main Constraint on Sequence Evolution9
Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?8
Population Structure, Genetic Connectivity, and Signatures of Local Adaptation of the Giant Black Tiger Shrimp (Penaeus monodon) throughout the Indo-Pacific Region8
Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts8
Monodopsis and Vischeria Genomes Shed New Light on the Biology of Eustigmatophyte Algae8
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages8
Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome8
The Chromosome-Level Genome ofTriplophysa dalaica(Cypriniformes: Cobitidae) Provides Insights into Its Survival in Extremely Alkaline Environment8
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement8
Phylogenetic and Selection Analysis of an Expanded Family of Putatively Pore-Forming Jellyfish Toxins (Cnidaria: Medusozoa)8
A Transcriptomic Pipeline Adapted for Genomic Sequence Discovery of Germline-Restricted Sequence in Zebra Finch,Taeniopygia guttata8
Whole-Genome Sequencing ofAcer catalpifoliumReveals Evolutionary History of Endangered Species8
Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures8
A Chromosome-Level Genome Assembly of the Dark Sleeper Odontobutis potamophila8
Mitochondrial Short-Term Plastic Responses and Long-Term Evolutionary Dynamics in Animal Species8
Incompatibility and Interchangeability in Molecular Evolution8
Polygenic Selection within a Single Generation Leads to Subtle Divergence among Ecological Niches8
Satellite-Like W-Elements: Repetitive, Transcribed, and Putative Mobile Genetic Factors with Potential Roles for Biology and Evolution of Schistosoma mansoni8
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