Genome Biology and Evolution

Article	Citations
Sex Chromosome Evolution: So Many Exceptions to the Rules	132
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination	79
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2	79
Genomic Insights into Plastid Evolution	73
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing	70
The Genomic Architecture and Evolutionary Fates of Supergenes	62
Effects of Synonymous Mutations beyond Codon Bias: The Evidence for Adaptive Synonymous Substitutions from Microbial Evolution Experiments	51
Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria	50
A Repertory of Rearrangements and the Loss of an Inverted Repeat Region in Passiflora Chloroplast Genomes	48
Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri	48
Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllan	46
Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure	46
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG)	42
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics	42
Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses	41
The Iron-Responsive Genome of the Chiton Acanthopleura granulata	40
Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes	38
Long-Read Genome Assemblies Reveal Extraordinary Variation in the Number and Structure of MHC Loci in Birds	36
The Evolution of Chromosome Numbers: Mechanistic Models and Experimental Approaches	36
Causes and Consequences of Purifying Selection on SARS-CoV-2	35
Viviparous Reptile Regarded to Have Temperature-Dependent Sex Determination Has Old XY Chromosomes	35
Comparative Genomics Underlines Multiple Roles of Profftella, an Obligate Symbiont of Psyllids: Providing Toxins, Vitamins, and Carotenoids	34
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics	34
Guppy Y Chromosome Integrity Maintained by Incomplete Recombination Suppression	33
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen	32

Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes	31
Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat	31
Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata)	31
A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data	30
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis	30
Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis	30
Symbiotic and Nonsymbiotic Members of the Genus Ensifer (syn. Sinorhizobium) Are Separated into Two Clades Based on Comparative Genomics and High-Throughput Phenotyping	29
Uneven Missing Data Skew Phylogenomic Relationships within the Lories and Lorikeets	28
Distinct Patterns of Selective Sweep and Polygenic Adaptation in Evolve and Resequence Studies	28
The Evolution of Phenotypic Plasticity in Response to Temperature Stress	28
Rampant Genome-Wide Admixture across theHeliconiusRadiation	28
Genome-Wide Analysis of Biosynthetic Gene Cluster Reveals Correlated Gene Loss with Absence of Usnic Acid in Lichen-Forming Fungi	27
Evolution of Mutation Rate in Astronomically Large Phytoplankton Populations	27
Vertebrate Lineages Exhibit Diverse Patterns of Transposable Element Regulation and Expression across Tissues	27
Transposable Element Mobilization in Interspecific Yeast Hybrids	26
On the prospect of achieving accurate joint estimation of selection with population history	26
Stochastic Gain and Loss of Novel Transcribed Open Reading Frames in the Human Lineage	26
Step-by-Step Evolution of Telomeres: Lessons from Yeasts	26
Sharp Increase of Problematic Mitogenomes of Birds: Causes, Consequences, and Remedies	26
Digging into the Genomic Past of Swiss Honey Bees by Whole-Genome Sequencing Museum Specimens	26
Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant PathogenVerticillium dahliae	26
The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity	25
Evolutionary Perspectives on Germline-Restricted Chromosomes in Flies (Diptera)	25
Coxiella burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors	25
The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen	25
A De Novo Transcriptome Assembly ofCeratopteris richardiiProvides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants	24
CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation	24
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly	24
Biased Gene Retention in the Face of Introgression Obscures Species Relationships	24
ADAR Editing in Viruses: An Evolutionary Force to Reckon with	23
Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction	23
Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench	23
Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity	23
Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral–Algae Symbioses	23
Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates	23
The Population-Specific Impact of Neandertal Introgression on Human Disease	23
An Annotated Chromosome-Level Reference Genome of the Red-Eared Slider Turtle (Trachemys scripta elegans)	22
How Can We Resolve Lewontin’s Paradox?	22
Fine-Scale Population Structure but Limited Genetic Differentiation in a Cooperatively Breeding Paper Wasp	22
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses	22
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals	22
Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes	22
The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies	21
Two Lineages of Pseudomonas aeruginosa Filamentous Phages: Structural Uniformity over Integration Preferences	21
Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal GenusBotrytis	21
Mutational Signatures of Replication Timing and Epigenetic Modification Persist through the Global Divergence of Mutation Spectra across the Great Ape Phylogeny	21
Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance	21
Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli	21
Genome Sequence of an Emerging Salmonella enterica Serovar Infantis and Genomic Comparison with Other S. Infantis Strains	21
Comparative Analysis of Genomic Repeat Content in Gomphocerine Grasshoppers Reveals Expansion of Satellite DNA and Helitrons in Species with Unusually Large Genomes	21

The Genome of the Cauliflower Coral Pocillopora verrucosa	20
Gene Duplications Are At Least 50 Times Less Frequent than Gene Transfers in Prokaryotic Genomes	20
A Path toward SARS-CoV-2 Attenuation: Metabolic Pressure on CTP Synthesis Rules the Virus Evolution	20
Supersized Ribosomal RNA Expansion Segments in Asgard Archaea	20
Nudivirus Remnants in the Genomes of Arthropods	20
Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations	20
piRNA Clusters Need a Minimum Size to Control Transposable Element Invasions	20
A New High-Quality Draft Genome Assembly of the Chinese Cordyceps Ophiocordyceps sinensis	20
The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity	20
Not Frozen in the Ice: Large and Dynamic Rearrangements in the Mitochondrial Genomes of the Antarctic Fish	19
piRNA and Transposon Dynamics in Drosophila: A Female Story	19
Inferring the Deep Past from Molecular Data	19
Large-Scale Phylogenetic Analysis of Trypanosomatid Adenylate Cyclases Reveals Associations with Extracellular Lifestyle and Host–Pathogen Interplay	19
Genomic Evidence of an Ancient East Asian Divergence Event in Wild Saccharomyces cerevisiae	19
Rapid Spread of Mutant Alleles in Worldwide SARS-CoV-2 Strains Revealed by Genome-Wide Single Nucleotide Polymorphism and Variation Analysis	19
Phylogenomic Analysis of Wolbachia Strains Reveals Patterns of Genome Evolution and Recombination	19
Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics	19
Selective Sweeps in a Nutshell: The Genomic Footprint of Rapid Insecticide Resistance Evolution in the Almond Agroecosystem	18
A High-Quality Reference Genome for a Parasitic Bivalve with Doubly Uniparental Inheritance (Bivalvia: Unionida)	18
Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea	18
Recombination Rate Variation and Infrequent Sex Influence Genetic Diversity in Chlamydomonas reinhardtii	18
Evolutionary and Comparative Analysis of Bacterial Nonhomologous End Joining Repair	18
The Genome Assembly and Annotation of the Apollo Butterfly Parnassius apollo, a Flagship Species for Conservation Biology	18
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation	18
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes	18
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes	18
Are Geckos Special in Sex Determination? Independently Evolved Differentiated ZZ/ZW Sex Chromosomes in Carphodactylid Geckos	18
Deep Learning in Population Genetics	18
Genomic Signatures of Honey Bee Association in an Acetic Acid Symbiont	17
Fitness Effects of Mutations: An Assessment of PROVEAN Predictions Using Mutation Accumulation Data	17
Impact of Transposable Elements on Methylation and Gene Expression across Natural Accessions of Brachypodium distachyon	17
In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus	17
Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness	17
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree	17
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera	17
A Chromosome—Level Genome Assembly of the Spotted Scat (Scatophagus argus)	17
The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome Sequences	17
Unbiased Subgenome Evolution in Allotetraploid Species ofEphedraand Its Implications for the Evolution of Large Genomes in Gymnosperms	17
A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family	17
The Evolutionary Origins of Extreme Halophilic Archaeal Lineages	17
A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals	16
Transcriptomic Profiling Reveals Extraordinary Diversity of Venom Peptides in Unexplored Predatory Gastropods of the Genus Clavus	16
Phylogenomics of Opsin Genes in Diptera Reveals Lineage-Specific Events and Contrasting Evolutionary Dynamics in Anopheles and Drosophila	16
The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders	16
Lineage and Parent-of-Origin Effects in DNA Methylation of Honey Bees (Apis mellifera) Revealed by Reciprocal Crosses and Whole-Genome Bisulfite Sequencing	16
Uniparental Genome Elimination in Australian Carp Gudgeons	16
Recurrent Loss of abaA, a Master Regulator of Asexual Development in Filamentous Fungi, Correlates with Changes in Genomic and Morphological Traits	16
The Limits to Estimating Population-Genetic Parameters with Temporal Data	16
The Genome of the Poecilogonous Annelid Streblospio benedicti	16
Analysis of Paralogons, Origin of the Vertebrate Karyotype, and Ancient Chromosomes Retained in Extant Species	16
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range E	16
At the Root of T2R Gene Evolution: Recognition Profiles of Coelacanth and Zebrafish Bitter Receptors	16
A Practical Guide to Design and Assess a Phylogenomic Study	16
Plastid Genome Evolution in the Subtribe Calypsoinae (Epidendroideae, Orchidaceae)	16
Read between the Lines: Diversity of Nontranslational Selection Pressures on Local Codon Usage	16
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918	15
Comparative Transcriptomics across Nematode Life Cycles Reveal Gene Expression Conservation and Correlated Evolution in Adjacent Developmental Stages	15
Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus	15
Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis	15
Evidence for a Syncytial Origin of Eukaryotes from Ancestral State Reconstruction	15
Comparative Genomics Suggests Mechanisms of Genetic Adaptation toward the Catabolism of the Phenylurea Herbicide Linuron in Variovorax	15
De Novo Genome Assembly of Limpet Bathyacmaea lactea (Gastropoda: Pectinodontidae): The First Reference Genome of a Deep-Sea Gastropod Endemic to Cold Seeps	15
Rampant Nuclear Transfer and Substitutions of Plastid Genes in Passiflora	15
First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis	15
Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development	15
Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States	15
Complete Genome Sequence of the Polysaccharide-Degrading Rumen Bacterium Pseudobutyrivibrio xylanivorans MA3014 Reveals an Incomplete Glycolytic Pathway	15
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects	15
sangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R	15
Pervasive Mitonuclear Coadaptation Underlies Fast Development in Interpopulation Hybrids of a Marine Crustacean	15
The Presence of Ancient Core Genes Reveals Endogenization from Diverse Viral Ancestors in Parasitoid Wasps	14
Only a Single Taxonomically Restricted Gene Family in the Drosophila melanogaster Subgroup Can Be Identified with High Confidence	14
The First Draft Genome Assembly of Snow Sheep (Ovis nivicola)	14
Evolution of a Record-Setting AT-Rich Genome: Indel Mutation, Recombination, and Substitution Bias	14
Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin	14
Genomic Analysis of the Only Blind Cichlid Reveals Extensive Inactivation in Eye and Pigment Formation Genes	14
A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria	14
Evolution of the Insect PPK Gene Family	14
Sequence of aCoxiellaEndosymbiont of the TickAmblyomma nuttalliSuggests a Pattern of Convergent Genome Reduction in theCoxiellaGenus	14
Plasmids Related to the Symbiotic Nitrogen Fixation Are Not Only Cooperated Functionally but Also May Have Evolved over a Time Span in Family Rhizobiaceae	14

Comparative Proteomics of Octocoral and Scleractinian Skeletomes and the Evolution of Coral Calcification	14
Portiera Gets Wild: Genome Instability Provides Insights into the Evolution of Both Whiteflies and Their Endosymbionts	14
Expression Evolution of Ancestral XY Gametologs across All Major Groups of Placental Mammals	14
Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa	14
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae	14
Synteny-Based Genome Assembly for 16 Species ofHeliconiusButterflies, and an Assessment of Structural Variation across the Genus	14
Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels	14
Nanopore Amplicon Sequencing Reveals Molecular Convergence and Local Adaptation of Rhodopsin in Great Lakes Salmonids	14
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insect	14
Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy	14
Evolving Perspective on the Origin and Diversification of Cellular Life and the Virosphere	13
Diversity and Evolution of Pigment Types in MarineSynechococcusCyanobacteria	13
Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins	13
Transcriptome-Wide Comparisons and Virulence Gene Polymorphisms of Host-Associated Genotypes of the Cnidarian Parasite Ceratonova shasta in Salmonids	13
Plastome Structural Evolution and Homoplastic Inversions in Neo-Astragalus (Fabaceae)	13
High Complexity and Degree of Genetic Variation in Brettanomyces bruxellensis Population	13
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades	13
Parallel Sequencing of Wolbachia wCer2 from Donor and Novel Hosts Reveals Multiple Incompatibility Factors and Genome Stability after Host Transfers	13
Reconstructing the History of Variation in Effective Population Size along Phylogenies	13
Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome	13
Secondary Evolve and Resequencing: An Experimental Confirmation of Putative Selection Targets without Phenotyping	13
Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia	13
Chromosome-Level Assembly of the Common Lizard (Zootoca vivipara) Genome	13
Paternally Inherited P-Element Copy Number Affects the Magnitude of Hybrid Dysgenesis in Drosophila simulans and D. melanogaster	13
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution	13
Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture	13
Mitochondrial DNA Sequence Diversity in Mammals: A Correlation between the Effective and Census Population Sizes	13
Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum	13
Genetic Adaptation in New York City Rats	13
Culture Volume Influences the Dynamics of Adaptation under Long-Term Stationary Phase	12
Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations	12
Testing sex-biased admixture origin of macaque species using autosomal and X-chromosomal genomic sequences	12
Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles	12
Microhomologies Are Associated with Tandem Duplications and Structural Variation in Plant Mitochondrial Genomes	12
Darwin’s Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds	12
Comparative Genomics of Strictly Vertically Transmitted, Feminizing Microsporidia Endosymbionts of Amphipod Crustaceans	12
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci	12
Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology	12
Comparative Population Genetics in the Human Gut Microbiome	12
Bumblebee Workers Show Differences in Allele-Specific DNA Methylation and Allele-Specific Expression	12
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae)	12
The Identification and Evolutionary Trends of the Solute Carrier Superfamily in Arthropods	12
Evolution of recombination landscapes in diverging populations of bread wheat	12
The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes)	12
Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins	12
Origin and Evolution of the Cannabinoid Oxidocyclase Gene Family	12
Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication	11
New Insights into Mitochondrial–Nuclear Interactions Revealed through Analysis of Small RNAs	11
A Study of Faster-Z Evolution in the Great Tit (Parus major)	11
New Environment, New Invaders—Repeated Horizontal Transfer of LINEs to Sea Snakes	11
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees	11
Chemoreceptor Diversity in Apoid Wasps and Its Reduction during the Evolution of the Pollen-Collecting Lifestyle of Bees (Hymenoptera: Apoidea)	11
Hybridization Dynamics and Extensive Introgression in theDaphnia longispinaSpecies Complex: New Insights from a High-QualityDaphnia galeataReference Genome	11
Postadmixture Selection on Chileans Targets Haplotype Involved in Pigmentation, Thermogenesis and Immune Defense against Pathogens	11
Genetic Signatures of Evolution of the Pluripotency Gene Regulating Network across Mammals	11
Inactivation of ancV1R as a Predictive Signature for the Loss of Vomeronasal System in Mammals	11
Evolutionary Plasticity of Mating-Type Determination Mechanisms inParamecium aureliaSibling Species	11
Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes	11
Defense Response in Brazilian Honey Bees (Apis mellifera scutellata × spp.) Is Underpinned by Complex Patterns of Admixture	11
Mitochondrial Genome Evolution of Placozoans: Gene Rearrangements and Repeat Expansions	11
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity	11
A Novel Microbialite-Associated Phototrophic Chloroflexi Lineage Exhibiting a Quasi-Clonal Pattern along Depth	11
Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents	11
Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage	11
Large Genetic Diversity and Strong Positive Selection in F-Box and GPCR Genes among the Wild Isolates of Caenorhabditis elegans	11
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution	11
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny	11
A Comprehensive Multi-Omic Approach Reveals a Relatively Simple Venom in a Diet Generalist, the Northern Short-Tailed Shrew, Blarina brevicauda	11
Genome-Wide Epigenetic Signatures of Adaptive Developmental Plasticity in the Andes	11
Population Genomics of the Maize Pathogen Ustilago maydis: Demographic History and Role of Virulence Clusters in Adaptation	11
Genome-Wide Association and Selective Sweep Studies Reveal the Complex Genetic Architecture of DMI Fungicide Resistance inCercospora beticola	11
Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels	11
Coordinated Gene Expression and Chromatin Regulation during Hydra Head Regeneration	11
Bidirectional Introgression between Mus musculus domesticus and Mus spretus	11
Contributions of cis- and trans-Regulatory Evolution to Transcriptomic Divergence across Populations in the Drosophila mojavensis Larval Brain	10
High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady ButterflyVanessa cardui	10
Candidates for Balancing Selection inLeishmania donovaniComplex Parasites	10
Comparative and Evolutionary Genomics of Isolates Provide Insight into the Pathoadaptation of Aeromonas	10
Genome Assembly of the Ragweed Leaf Beetle: A Step Forward to Better Predict Rapid Evolution of a Weed Biocontrol Agent to Environmental Novelties	10
A long-term conserved satellite DNA that remains unexpanded in several genomes of Characiformes fish is actively transcribed	10
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species (Gila robustaComplex) in the Colorado River	10
Enrichment of Non-B-Form DNA at D. melanogaster Centromeres	10
Significant Evolutionary Constraints on Neuron Cells Revealed by Single-Cell Transcriptomics	10
Consequences of Cryopreservation in Diverse Natural Isolates of Saccharomyces cerevisiae	10
Transcriptomic Signatures of Ageing Vary in Solitary and Social Forms of an Orchid Bee	10
The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes	10
A Naturally Heteroplasmic Clam Provides Clues about the Effects of Genetic Bottleneck on Paternal mtDNA	10
Genomic Signature of Shifts in Selection and Alkaline Adaptation in Highland Fish	10
nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over	10
Mitochondrial Genome Evolution in Pelagophyte Algae	10
Phylogenomics of the Epigenetic Toolkit Reveals Punctate Retention of Genes across Eukaryotes	10
Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System	10
A Minimally Morphologically Destructive Approach for DNA Retrieval and Whole-Genome Shotgun Sequencing of Pinned Historic Dipteran Vector Species	10
Ancestral State Reconstructions Trace Mitochondria But Not Phagocytosis to the Last Eukaryotic Common Ancestor	10
The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes	10