Genome Biology and Evolution

Article	Citations
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination	99
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing	91
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2	89
The Genomic Architecture and Evolutionary Fates of Supergenes	71
Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes	69
Effects of Synonymous Mutations beyond Codon Bias: The Evidence for Adaptive Synonymous Substitutions from Microbial Evolution Experiments	65
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics	55
Continental-Scale Gene Flow Prevents Allopatric Divergence of Pelagic Freshwater Bacteria	53
The Iron-Responsive Genome of the Chiton Acanthopleura granulata	47
Long-Read Genome Assemblies Reveal Extraordinary Variation in the Number and Structure of MHC Loci in Birds	42
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics	40
Deep Learning in Population Genetics	39
Causes and Consequences of Purifying Selection on SARS-CoV-2	38
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis	37
Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant PathogenVerticillium dahliae	33
Rampant Genome-Wide Admixture across theHeliconiusRadiation	33
On the prospect of achieving accurate joint estimation of selection with population history	33
Sharp Increase of Problematic Mitogenomes of Birds: Causes, Consequences, and Remedies	32
ADAR Editing in Viruses: An Evolutionary Force to Reckon with	32
The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity	31
CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation	30
Coxiella burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors	30
Gene Duplications Are At Least 50 Times Less Frequent than Gene Transfers in Prokaryotic Genomes	30
Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction	30
A Practical Guide to Design and Assess a Phylogenomic Study	30

Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral–Algae Symbioses	29
Transposable Element Mobilization in Interspecific Yeast Hybrids	29
How Can We Resolve Lewontin’s Paradox?	29
Step-by-Step Evolution of Telomeres: Lessons from Yeasts	29
Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics	28
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes	27
A De Novo Transcriptome Assembly ofCeratopteris richardiiProvides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants	27
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly	27
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses	26
Evolutionary Perspectives on Germline-Restricted Chromosomes in Flies (Diptera)	25
The Population-Specific Impact of Neandertal Introgression on Human Disease	25
Not Frozen in the Ice: Large and Dynamic Rearrangements in the Mitochondrial Genomes of the Antarctic Fish	25
The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies	24
The Genome of the Poecilogonous Annelid Streblospio benedicti	24
A High-Quality Reference Genome for a Parasitic Bivalve with Doubly Uniparental Inheritance (Bivalvia: Unionida)	24
Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis	24
Genomic Evidence of an Ancient East Asian Divergence Event in Wild Saccharomyces cerevisiae	24
Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity	23
Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome	23
sangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R	23
Mutational Signatures of Replication Timing and Epigenetic Modification Persist through the Global Divergence of Mutation Spectra across the Great Ape Phylogeny	23
In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus	23
Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations	22
The Evolutionary Origins of Extreme Halophilic Archaeal Lineages	22
Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development	22
Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918	21
The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders	21
Inferring the Deep Past from Molecular Data	21
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes	21
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree	21
Are Geckos Special in Sex Determination? Independently Evolved Differentiated ZZ/ZW Sex Chromosomes in Carphodactylid Geckos	21
Fitness Effects of Mutations: An Assessment of PROVEAN Predictions Using Mutation Accumulation Data	21
A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family	21
Inferring Balancing Selection From Genome-Scale Data	21
Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus	20
Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa	20
The Genome Assembly and Annotation of the Apollo Butterfly Parnassius apollo, a Flagship Species for Conservation Biology	20
The Presence of Ancient Core Genes Reveals Endogenization from Diverse Viral Ancestors in Parasitoid Wasps	20
At the Root of T2R Gene Evolution: Recognition Profiles of Coelacanth and Zebrafish Bitter Receptors	20
Comparative Population Genetics in the Human Gut Microbiome	20
A Chromosome—Level Genome Assembly of the Spotted Scat (Scatophagus argus)	20
Rapid Spread of Mutant Alleles in Worldwide SARS-CoV-2 Strains Revealed by Genome-Wide Single Nucleotide Polymorphism and Variation Analysis	19
Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation	19
Selective Sweeps in a Nutshell: The Genomic Footprint of Rapid Insecticide Resistance Evolution in the Almond Agroecosystem	19
Read between the Lines: Diversity of Nontranslational Selection Pressures on Local Codon Usage	19
Evolution of the Insect PPK Gene Family	19
Anomalous Phylogenetic Behavior of Ribosomal Proteins in Metagenome-Assembled Asgard Archaea	19
A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria	19
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects	18
Uniparental Genome Elimination in Australian Carp Gudgeons	18

Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States	18
Reconstructing the History of Variation in Effective Population Size along Phylogenies	18
A Minimally Morphologically Destructive Approach for DNA Retrieval and Whole-Genome Shotgun Sequencing of Pinned Historic Dipteran Vector Species	18
Enrichment of Non-B-Form DNA at D. melanogaster Centromeres	18
Unbiased Subgenome Evolution in Allotetraploid Species ofEphedraand Its Implications for the Evolution of Large Genomes in Gymnosperms	17
Evolutionary Genetics and Admixture in African Populations	17
Pervasive Mitonuclear Coadaptation Underlies Fast Development in Interpopulation Hybrids of a Marine Crustacean	17
Evidence for a Syncytial Origin of Eukaryotes from Ancestral State Reconstruction	17
Plastome Structural Evolution and Homoplastic Inversions in Neo-Astragalus (Fabaceae)	17
Nanopore Amplicon Sequencing Reveals Molecular Convergence and Local Adaptation of Rhodopsin in Great Lakes Salmonids	17
Phylogenomics of Opsin Genes in Diptera Reveals Lineage-Specific Events and Contrasting Evolutionary Dynamics in Anopheles and Drosophila	17
Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture	17
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range E	17
Comparative Genomics of Strictly Vertically Transmitted, Feminizing Microsporidia Endosymbionts of Amphipod Crustaceans	17
Synteny-Based Genome Assembly for 16 Species ofHeliconiusButterflies, and an Assessment of Structural Variation across the Genus	17
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insect	17
Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins	17
Origin and Evolution of the Cannabinoid Oxidocyclase Gene Family	17
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae	17
Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages	17
Culture Volume Influences the Dynamics of Adaptation under Long-Term Stationary Phase	16
Ancestral State Reconstructions Trace Mitochondria But Not Phagocytosis to the Last Eukaryotic Common Ancestor	16
Analysis of Paralogons, Origin of the Vertebrate Karyotype, and Ancient Chromosomes Retained in Extant Species	16
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution	16
Expanding the Menu: Are Polyphagy and Gene Family Expansions Linked across Lepidoptera?	16
Chemoreceptor Diversity in Apoid Wasps and Its Reduction during the Evolution of the Pollen-Collecting Lifestyle of Bees (Hymenoptera: Apoidea)	16
Metagenomics Shines Light on the Evolution of “Sunscreen” Pigment Metabolism in theTeloschistales(Lichen-Forming Ascomycota)	16
Genome-Wide Association and Selective Sweep Studies Reveal the Complex Genetic Architecture of DMI Fungicide Resistance inCercospora beticola	16
The Promise of Inferring the Past Using the Ancestral Recombination Graph	16
Genic Selection Within Prokaryotic Pangenomes	16
Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles	16
Diversity and Evolution of Pigment Types in MarineSynechococcusCyanobacteria	16
High-Resolution Estimates of Crossover and Noncrossover Recombination from a Captive Baboon Colony	15
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae)	15
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades	15
New Insights into Mitochondrial–Nuclear Interactions Revealed through Analysis of Small RNAs	15
The Evolution of Interdependence in a Four-Way Mealybug Symbiosis	15
Sequence of aCoxiellaEndosymbiont of the TickAmblyomma nuttalliSuggests a Pattern of Convergent Genome Reduction in theCoxiellaGenus	15
Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations	15
Genome-Wide Epigenetic Signatures of Adaptive Developmental Plasticity in the Andes	14
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species (Gila robustaComplex) in the Colorado River	14
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka FishOryzias latipes	14
Mitogenomics and mitochondrial gene phylogeny decipher the evolution ofSaccharomycotinayeasts	14
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees	14
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors	14
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution	14
How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome	14
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci	14
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity	14
The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes	14
Phylogenomic Analyses Show Repeated Evolution of Hypertrophied Lips Among Lake Malawi Cichlid Fishes	14
Evolutionary Plasticity of Mating-Type Determination Mechanisms inParamecium aureliaSibling Species	14
Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia	14
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny	13
Genetic Adaptation in New York City Rats	13
Hybridization Dynamics and Extensive Introgression in theDaphnia longispinaSpecies Complex: New Insights from a High-QualityDaphnia galeataReference Genome	13
Bidirectional Introgression between Mus musculus domesticus and Mus spretus	13
Mitochondrial Phylogenomics of Cuscuta (Convolvulaceae) Reveals a Potentially Functional Horizontal Gene Transfer from the Host	13
Evolution of recombination landscapes in diverging populations of bread wheat	13
Evolving Perspective on the Origin and Diversification of Cellular Life and the Virosphere	13
Coordinated Gene Expression and Chromatin Regulation during Hydra Head Regeneration	13
Chromosome-Level Genome Assembly of the Common Chaffinch (Aves: Fringilla coelebs): A Valuable Resource for Evolutionary Biology	13
Adaptive Potential of Epigenetic Switching During Adaptation to Fluctuating Environments	13
A New Hope: A Hermaphroditic Nematode Enables Analysis of a Recent Whole Genome Duplication Event	13
nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over	13
Genome Mining and Evolutionary Analysis Reveal Diverse Type III Polyketide Synthase Pathways in Cyanobacteria	12
Cryogenian Origins of Multicellularity in Archaeplastida	12
DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows	12
De novoAssembly and Comparative Analyses of Mitochondrial Genomes in Piperales	12
Mutational Pressure Drives Differential Genome Conservation in Two Bacterial Endosymbionts of Sap-Feeding Insects	12
The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves:Certhia americana)	12
Metabolic Adaptations to Marine Environments: Molecular Diversity and Evolution of Ovothiol Biosynthesis in Bacteria	12
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats	12
A Draft Genome Assembly ofCulex pipiens pallens(Diptera: Culicidae) Using PacBio Sequencing	12
Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication	12
Large Genetic Diversity and Strong Positive Selection in F-Box and GPCR Genes among the Wild Isolates of Caenorhabditis elegans	12
Mitochondrial Genome Evolution in Pelagophyte Algae	12
Multiple Losses of MSH1, Gain of mtMutS, and Other Changes in the MutS Family of DNA Repair Proteins in Animals	12
Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina	12
Population Genomics of the Maize PathogenUstilago maydis: Demographic History and Role of Virulence Clusters in Adaptation	12

Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents	12
Genomic Insights into Genetic Diploidization in the Homosporous Fern Adiantum nelumboides	12
Maximum SNP FST Outperforms Full-Window Statistics for Detecting Soft Sweeps in Local Adaptation	12
High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady ButterflyVanessa cardui	12
Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System	12
De Novo Genome Assembly and Annotation of an Andean Caddisfly, Atopsyche davidsoni Sykora, 1991, a Model for Genome Research of High-Elevation Adaptations	11
A Naturally Heteroplasmic Clam Provides Clues about the Effects of Genetic Bottleneck on Paternal mtDNA	11
The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes	11
A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size	11
Complete Genome Sequencing of a NovelGloeobacterSpecies from a Waterfall Cave in Mexico	11
Eye-Transcriptome and Genome-Wide Sequencing for Scolecophidia: Implications for Inferring the Visual System of the Ancestral Snake	11
Rapid Evolution of Complete Dosage Compensation in Poecilia	11
Gene Transfer Agents in Bacterial Endosymbionts of Microbial Eukaryotes	11
Sexual Dimorphism through the Lens of Genome Manipulation, Forward Genetics, and Spatiotemporal Sequencing	11
A long-term conserved satellite DNA that remains unexpanded in several genomes of Characiformes fish is actively transcribed	11
The Rad9–Rad1–Hus1 DNA Repair Clamp is Found in Microsporidia	11
Genomic Evidence for Convergent Molecular Adaptation in Electric Fishes	11
The Relationship between the Misfolding Avoidance Hypothesis and Protein Evolutionary Rates in the Light of Empirical Evidence	11
Heterogeneous Mutation Rates and Spectra in Yeast Hybrids	11
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages	11
Structural Plastome Evolution in Holoparasitic Hydnoraceae with Special Focus on Inverted and Direct Repeats	11
Utilization of Cobalamin Is Ubiquitous in Early-Branching Fungal Phyla	11
Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors	11
What We Talk About When We Talk About “Junk DNA”	11
Demographic History of the Brown Bear (Ursus arctos) on Hokkaido Island, Japan, Based on Whole-Genomic Sequence Analysis	11
Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk	11
Between Interactions and Aggregates: The PolyQ Balance	11
Genomic Signature of Shifts in Selection and Alkaline Adaptation in Highland Fish	11
The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution inPopulus trichocarpa	11
Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism	11
A Chromosome-Scale Hybrid Genome Assembly of the Extinct Tasmanian Tiger (Thylacinus cynocephalus)	10
Candidates for Balancing Selection inLeishmania donovaniComplex Parasites	10
Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell’s and Gray-Cheeked Thrushes (Aves:Catharus bicknelliandCatharus minimus)	10
Bacterial adaptation by a transposition burst of an invading IS element	10
Chromosome-scale Genome Assembly of the Yellow Nutsedge (Cyperus esculentus)	10
Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure	10
Epigenetic and Genetic Population Structure is Coupled in a Marine Invertebrate	10
Examination of Gene Loss in the DNA Mismatch Repair Pathway and Its Mutational Consequences in a Fungal Phylum	10
Challenges Faced by Highly Polyploid Bacteria with Limits on DNA Inheritance	10
Chromosome-level Assembly, Dosage Compensation and Sex-biased Gene Expression in the Small Brown Planthopper,Laodelphax striatellus	10
Comparative Analysis of Mitochondrial Genomes in Gryllidea (Insecta: Orthoptera): Implications for Adaptive Evolution in Ant-Loving Crickets	10
The Origin and Evolution of Antistasin-like Proteins in Leeches (Hirudinida, Clitellata)	10
An Adagio for Viruses, Played Out on Ancient DNA	10
Local Adaptation and the Evolution of Genome Architecture in Threespine Stickleback	10
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity	10
Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis onColtricia	10
The Evolutionary Constraints on Angiosperm Chloroplast Adaptation	10
Genomics of Diversification of Pseudomonas aeruginosa in Cystic Fibrosis Lung-like Conditions	10
Transcriptomic Signatures of Ageing Vary in Solitary and Social Forms of an Orchid Bee	10
Synteny Identifies Reliable Orthologs for Phylogenomics and Comparative Genomics of the Brassicaceae	10
Assessing Rapid Relaxed-Clock Methods for Phylogenomic Dating	10
Horizontal Transfer of Microbial Toxin Genes to Gall Midge Genomes	10
Developing an Appropriate Evolutionary Baseline Model for the Study of Human Cytomegalovirus	9
Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot “Djulis” (Chenopodium formosanum)	9
Chromosome-Scale Genome Assembly and Annotation of Allotetraploid Annual Bluegrass (Poa annua L.)	9
A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly	9
Concurrent Evolution of Antiaging Gene Duplications and Cellular Phenotypes in Long-Lived Turtles	9
Gene Structure-Based Homology Search Identifies Highly Divergent Putative Effector Gene Family	9
Systematic Exploration of SARS-CoV-2 Adaptation to Vero E6, Vero E6/TMPRSS2, and Calu-3 Cells	9
Single-Cell RNA Sequencing Reveals Microevolution of the Stickleback Immune System	9
Genomic Analyses Unveil Helmeted Guinea Fowl (Numida meleagris) Domestication in West Africa	9
Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees	9
De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome	9
Long-read Sequencing Data Reveals Dynamic Evolution of Mitochondrial Genome Size and the Phylogenetic Utility of Mitochondrial DNA in Hercules Beetles (Dynastes; Scarabaeidae)	9
Genome-Wide Allele-Specific Expression in Obligately AsexualDaphnia pulexand the Implications for the Genetic Basis of Asexuality	9
The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae	9
Pleiotropic Enhancers are Ubiquitous Regulatory Elements in the Human Genome	9
Chromosome-Level Genome Assembly of the Green Peafowl (Pavo muticus)	9
The Missing Expression Level–Evolutionary Rate Anticorrelation in Viruses Does Not Support Protein Function as a Main Constraint on Sequence Evolution	9
Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens	9
Comparative Genomics Suggests a Taxonomic Revision of the Staphylococcus cohnii Species Complex	9
Evolutionary Dynamics of Asexual Hypermutators Adapting to a Novel Environment	9
Genome Size Reduction and Transposon Activity Impact tRNA Gene Diversity While Ensuring Translational Stability in Birds	9
Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes	9
Contrasting Genomic Evolution Between Domesticated and WildKluyveromyces lactisYeast Populations	9
Nucleotide Usage Biases Distort Inferences of the Species Tree	9
The Genome of the Margined White Butterfly (Pieris macdunnoughii): Sex Chromosome Insights and the Power of Polishing with PoolSeq Data	9
Tracing the Evolution of Human Gene Regulation and Its Association with Shifts in Environment	9
Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome	8
The Chromosome-Level Genome ofTriplophysa dalaica(Cypriniformes: Cobitidae) Provides Insights into Its Survival in Extremely Alkaline Environment	8
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement	8
Phylogenetic and Selection Analysis of an Expanded Family of Putatively Pore-Forming Jellyfish Toxins (Cnidaria: Medusozoa)	8
A Transcriptomic Pipeline Adapted for Genomic Sequence Discovery of Germline-Restricted Sequence in Zebra Finch,Taeniopygia guttata	8
Whole-Genome Sequencing ofAcer catalpifoliumReveals Evolutionary History of Endangered Species	8
Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures	8
A Chromosome-Level Genome Assembly of the Dark Sleeper Odontobutis potamophila	8
Mitochondrial Short-Term Plastic Responses and Long-Term Evolutionary Dynamics in Animal Species	8
Incompatibility and Interchangeability in Molecular Evolution	8
Polygenic Selection within a Single Generation Leads to Subtle Divergence among Ecological Niches	8
Satellite-Like W-Elements: Repetitive, Transcribed, and Putative Mobile Genetic Factors with Potential Roles for Biology and Evolution of Schistosoma mansoni	8
Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?	8
Population Structure, Genetic Connectivity, and Signatures of Local Adaptation of the Giant Black Tiger Shrimp (Penaeus monodon) throughout the Indo-Pacific Region	8
Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts	8
Monodopsis and Vischeria Genomes Shed New Light on the Biology of Eustigmatophyte Algae	8
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages	8