Environmental Microbiology Reports

Article	Citations
Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus: A role for the microbiome	200
Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep	59
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Cyanobacterial community composition and their functional shifts associated with biocrust succession in the Gurbantunggut Desert	36
Prevalence, Distribution and Antimicrobial Susceptibility of Enterobacteriaceae and Non‐Fermenting Gram‐Negative Bacilli Isolated From Environmental Samples in a Veterinary Clinical Hospital in	36
Global 16S rRNA diversity of provannid snail endosymbionts from Indo‐Pacific deep‐sea hydrothermal vents	34
Feeding strategy and feed protein level affect the gut microbiota of common carp (Cyprinus carpio)	30
Seasonal and interannual variability of the free‐living and particle‐associated bacteria of a coastal microbiome	26
Microbial Communities in Agave Fermentations Vary by Local Biogeographic Regions	26
Identifying Potential Geochemical and Microbial Impacts of Hydrogen Storage in a Deep Saline Aquifer	26
Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies	25
A genome–proteome‐based approach for xylan degradation by Cohnella sp. AR92	24
Microorganism community structure: A characterisation of agrosystems from Madeira Archipelago	22
Rooting for Success: The Role of Microorganisms in Promoting Growth and Resilience in Black Alder Seedlings	22
Issue Information	21
AcrAB, the major RND‐type efflux pump of Photorhabdus laumondii, confers intrinsic multidrug‐resistance and contributes to virulence in insects	19
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Activity and abundance of methanotrophic bacteria in a northern mountainous gradient of wetlands	17
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Succession and assembly mechanisms of seawater prokaryotic communities along an extremely wide salinity gradient	16
Herbivory shapes the rhizosphere bacterial microbiota in potato plants	15
Regulation of nitrogen transformation and microbial community by inoculation during livestock manure composting	15
Isolation of Acanthamoeba Species and Bacterial Symbiont Variability in Puna Salt Plains, Argentina	15
Sulfur cycling likely obscures dynamic biologically‐driven iron redox cycling in contemporary methane seep environments	15
Carbon metabolism and adaptation of hyperalkaliphilic microbes in serpentinizing spring of Manleluag, the Philippines	14

A novel, divergent alkane monooxygenase (alkB) clade involved in crude oil biodegradation	14
Issue Information	14
Microbiomes in agroecosystem: Diversity, function and assembly mechanisms	14
Unveiling Short‐Scale Responses: How Pico‐ and Nanoeukaryotic Plankton Navigate Environmental Variability in a Coastal Upwelling System	13
Year‐Round Quantification, Structure and Dynamics of Epibacterial Communities From Diverse Macroalgae Reveal a Persistent Core Microbiota and Strong Host Specificities	13
Issue Information	13
A new metabolic trait in an acetogen: Mixed acid fermentation of fructose in a methylene‐tetrahydrofolate reductase mutant of Acetobacterium woodii	13
Dust sprinkling as an effective method for infecting layer chickens with wild‐type SalmonellaTyphimurium and changes in host gut microbiota	13
Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy SUS304	13
Issue Information	12
Paracoccus kondratievae produces poly(3‐hydroxybutyrate) under elevated temperature conditions	12
Bacterial endophytic community composition varies by hemp cultivar in commercially sourced seed	12
More Than a Stick in the Mud: Eelgrass Leaf and Root Bacterial Communities Are Distinct From Those on Physical Mimics	12
Issue Information	12
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Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land‐use for water quality and public health in Aotearoa New Zealand	12
Issue Information	12
How do high phosphate concentrations affect soil microbial communities after a century of ecosystem self‐reclamation?	11
Heterogeneity of the white truffle Tuber magnatum in a limited geographic area of Central‐Southern Italy	11
Metabolic versatility of aerobic methane‐oxidizing bacteria under anoxia in aquatic ecosystems	11
Symbioses of alvinocaridid shrimps from the South West Pacific: No chemosymbiotic diets but conserved gut microbiomes	10
Whole‐cell studies of substrate and inhibitor specificity of isoprene monooxygenase and related enzymes	10
Trophic interrelationships of bacteria are important for shaping soil protist communities	10
Thermodynamics shapes the biogeography of propionate‐oxidizing syntrophs in paddy field soils	10
Conserved infections and reproductive phenotypes of Wolbachia symbionts in Asian tortrix moths	10
In silico analysis of diversity, specificity and molecular evolution of Stenotrophomonas phages	9
Genome‐resolved metagenomics revealed novel microbial taxa with ancient metabolism from macroscopic microbial mat structures inhabiting anoxic deep reefs of a Maldivian Blue Hole	9
A quantitative sequencing method using synthetic internal standards including functional and phylogenetic marker genes	9
Wolbachia modify host cell metabolite profiles in response to short‐term temperature stress	9
Genome‐resolved metagenomics identifies novel active microbes in biogeochemical cycling within methanol‐enriched soil	9
Synergistic mechanisms of humic acid and biomineralization in cadmium remediation using Lysinibacillus fusiformis	9
The potential of Pseudomonas for bioremediation of oxyanions	9
Global expansion of Vibrio spp. in hot water	9
Evidence of a putative CO2 delivery system to the chromatophore in the photosynthetic amoeba Paulinella	9
Wolbachia in Antarctic terrestrial invertebrates: Absent or undiscovered?	9
Issue Information	9
Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae	8
Issue Information	8
Desert plants, arbuscular mycorrhizal fungi and associated bacteria: Exploring the diversity and role of symbiosis under drought	8
Withdrawn: The two‐component system RstAB regulates production of a polysaccharide capsule with a role in virulence in the marine pathogen Photobacterium damselae subsp. damselae<	8
Issue Information	8
Acidophilic sulphate‐reducing bacteria: Diversity, ecophysiology, and applications	8
‘Candidatus Gromoviella agglomerans’, a novel intracellular Holosporaceae parasite of the ciliate Paramecium showing marked genome reduction	8
O‐acetylesterase activity of Bifidobacterium bifidum sialidase facilities the liberation of sialic acid and encourages the proliferation of sialic acid scavenging Bifidobacterium brev	8
Is the gut microbiome of insects a potential source to meet UN sustainable development goals to eliminate plastic pollution?	8
The impacts of water quality on the amphibian chytrid fungal pathogen: A systematic review	7
Genotypes and phenotypes of methicillin‐resistant staphylococci isolated from shrimp aquaculture farms	7
The contribution of beneficial wheat seed fungal communities beyond disease‐causing fungi: Advancing heritable mycobiome‐based plant breeding	7
New bacterial strains for ibuprofen biodegradation: Drug removal, transformation, and potential catabolic genes	7
Soil exposure accelerates recovery of the gut microbiota in antibiotic‐treated mice	7

Carbon dioxide fixation by microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	7
Pyricularia oryzae enhances Streptomyces griseus growth via non‐volatile alkaline metabolites	7
In it together: Candida–bacterial oral biofilms and therapeutic strategies	7
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Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	7
Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress	7
Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers	6
Issue Information	6
Cocaine esterase occurrence in global wastewater microbiomes and potential for biotransformation of novel psychoactive substances	6
Differential requirement for RecFOR pathway components in Thermus thermophilus	6
Climate change and antibiotic resistance: A scoping review	6
Novel angular naphthopyrone formation by Arp1p dehydratase involved in Aspergillus fumigatus melanin biosynthesis	6
The interactions and hierarchical effects of long‐term agricultural stressors on soil bacterial communities	6
Direct Evidence of Microbial Sunscreen Production by Scum‐Forming Cyanobacteria in the Baltic Sea	6
Anaerobic oxidation of methane mediated by microbial extracellular respiration	6
Microbes controlling plant pathogens	6
Phagotrophy in the nitrogen‐fixing haptophyte Braarudosphaera bigelowii	6
Persistent tissue‐specific resident microbiota in oysters across a broad geographical range	6
Transinfected Wolbachia strains induce a complex of cytoplasmic incompatibility phenotypes: Roles of CI factor genes	6
Unique episymbiotic relationship between Candidatus Patescibacteria and Zoogloea in activated sludge flocs at a municipal wastewater treatment plant	6
Inactivation of siderophore iron‐chelating moieties by the fungal wheat root symbiont Pyrenophora biseptata	6
Bacterial rather than fungal diversity and community assembly drive soil multifunctionality in a subtropical forest ecosystem	6
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Effects of 5‐year experimental warming in the Alpine belt on soil Archaea: Multi‐omics approaches and prospects	6
Investigation of Suitable, Readily Available, Sources of Sulfate‐Reducing Bacteria Inoculum, and Evaluation of Sulfate Reduction Rates Achieved at Different pHs	6
CORRIGENDUM	5
Nutrients mediate caffeine inhibition of Escherichia coli	5
Investigating the infant gut microbiota in developing countries: worldwide metagenomic meta‐analysis involving infants living in sub‐urban areas of Côte d'Ivoire	5
Bacteria on the foundational kelp in kelp forest ecosystems: Insights from culturing, whole genome sequencing and metabolic assays	5
Cereal leaf beetle‐associated bacteria enhance the survival of their host upon insecticide treatments and respond differently to insecticides with different modes of action	5
Microbes and climate change: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	5
Microbial diversity in the arid and semi‐arid soils of Botswana	5
Exploring Microbiological Dynamics in a Salt Cavern for Potential Hydrogen Storage Use	5
High‐affinity amide‐lanthanide adsorption to gram‐positive soil bacteria	5
Zoonotic bacterial and parasitic intestinal pathogens in foxes, raccoons and other predators from eastern Germany	5
Microbial Rhodopsins: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	5
The potential of bacterial microcompartment architectures for phytonanotechnology	5
Bacterial symbionts of the precious coral Corallium rubrum are differentially distributed across colony‐specific compartments and differ among colormorphs	5
Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature	5
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Microbes and hydrothermal environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	5
Niche selection in bacterioplankton: A study of taxonomic composition and single‐cell characteristics in an acidic reservoir	4
Phthalate hydrolase: distribution, diversity and molecular evolution	4
Whole‐genome sequence analysis of Staphylococcus aureus from retail fish acknowledged the incidence of highly virulent ST672‐MRSA‐IVa/t1309, an emerging Indian clone, in Assam, India	4
The etherase system of Novosphingobium sp. MBES04 functions as a sensor of lignin fragments through phenylpropanone production to induce specific transcriptional responses	4
The ubiquitous soil verrucomicrobial clade ‘Candidatus Udaeobacter’ shows preferences for acidic pH	4
Temporal and Depth‐Driven Variability of Pelagic Bacterial Communities in Lake Erie: Biofilm and Plankton Dynamics	4
How do phytophagous insects affect phyllosphere fungi? Tracking fungi from milkweed to monarch caterpillar frass reveals communities dominated by fungal yeast	4
Physiological response mechanism of heavy metal‐resistant endophytic fungi isolated from the roots of Polygonatum kingianum	4
Effects of different short‐term tillage managements on rhizosphere soil autotrophic CO2‐fixing bacteria in a double‐cropping rice paddy field	4
Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents	4
Environmental processes and health implications potentially mediated by dust‐borne bacteria	4
Novel virocell metabolic potential revealed in agricultural soils by virus‐enriched soil metagenome analysis	4
Utilization of lasso peptides for biodegradation of polycyclic aromatic hydrocarbons	4
Metagenomic airborne resistome from urban hot spots through the One Health lens	4
At what cost? The impact of bacteriophage resistance on the growth kinetics and protein synthesis of Escherichia coli	4
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Surveillance of influenza A and B viruses from community and hospital wastewater treatment plants	4
Halomonas alkaliantarctica as a platform for poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) production from biodiesel‐derived glycerol	4
Functional genome mining and taxono‐genomics reveal eco‐physiological traits and species distinctiveness of aromatic‐degrading Pseudomonas bharatica sp. nov.	4
Bacterial epiphyte and endophyte communities of seagrass Thalassia hemprichii: the impact of feed extract solution	4
Short‐term microbialite resurgence as indicator of ecological resilience against crises (Catamarca, Argentine Puna)	4
National‐scale distribution of protists associated with sorghum leaves and roots	4
The ‘microbiome counterattack’: Insights on the soil and root‐associated microbiome in diverse chickpea and lentil genotypes after an erratic rainfall event	4
Subtle changes in topsoil microbial communities of drained forested peatlands after prolonged drought	4
Strategies of organic phosphorus recycling by soil bacteria: acquisition, metabolism, and regulation	4
In vitro interactions between Bradyrhizobium spp. and Tuber magnatum mycelium	4
Scaling down the microbial loop: data‐driven modelling of growth interactions in a diatom–bacterium co‐culture	4
Efficiency and specificity ofCARD‐FISHprobes in detection of marine vibrios	4
Comparative analysis of enzymatic profiles and biofilm formation in clinical and environmental Candida kefyr isolates	4
Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism	3
Limited variation in microbial communities across populations of Macrosteles leafhoppers (Hemiptera: Cicadellidae)	3
Molecular and metabolic characteristics of wastewater associated Escherichia coli strains	3
Broad time‐dependent transcriptional activity of metabolic genes of E. coli O104:H4 strain C227/11Φcu in a soil microenvironment at low temperature	3
Changes in soil microbial communities after exposure to neonicotinoids: A systematic review	3
Microbial community metabolism	3
Plant species‐dependent transmission of Escherichia coli O157:H7 from the spermosphere to cotyledons and first leaves	3
High calcium and strontium uptake by the green microalgaTetraselmis chuiis related to micropearl formation and cell growth	3
Matrix‐producing cells formed ‘Van Gogh bundles’ facilitate Bacillus subtilis biofilm self‐healing	3
Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii	3

Plankton and marine aggregates as transmission vectors for V. aestuarianus 02/041 infecting the pacific oyster Crassostrea gigas	3
Electrochemical Detection of Carbon Steel Corrosion Induced by Fermentative Bacteria From Natural Gas Transmission Lines	3
Polyfluorinated compound biodegradation: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	3
The Lon protease negatively regulates pyoluteorin biosynthesis through the Gac/Rsm‐RsmE cascade and directly degrades the transcriptional activator PltR in Pseudomonas protege	3
Light‐dependent niche differentiation in two mixotrophic bacterivores	3
Bacterial Communities From Two Freshwater Aquaculture Systems in Northern Germany	3
Acidophilic methanotrophs: Occurrence, diversity, and possible bioremediation applications	3
Detection, fate and transport of the biohazardous agent Toxoplasma gondii in soil water systems: Influence of soil physicochemical properties, water chemistry and surfactant	3
Microbial perspective of inhibited carbon turnover in Tangel humus of the Northern Limestone Alps	3
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The assessment of microbial ecology: a special emphasis on the Indian scenario	3
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Microbial diversity and associated metabolic potential in the supraglacial habitat of a fast‐retreating glacier: a case study of Patsio glacier, North‐western Himalaya	3
Metagenomic and metatranscriptomic analysis reveals enrichment for xenobiotic‐degrading bacterial specialists and xenobiotic‐degrading genes in a Canadian Prairie two‐cell	3
The rootstock modifies the arbuscular mycorrhizal community of the root system, while the influence of the scion is limited in grapevines	3
Coupling the electrocatalytic dechlorination of 2,4‐D with electroactive microbial anodes	3
Fungal microbiomes associated with Lycopodiaceae during ecological succession	2
Issue Information	2
The root‐associated arbuscular mycorrhizal fungal assemblages of exotic alien plants are simplified in invaded distribution ranges, but dominant species are retained: A trans‐continental perspective	2
Bacterial community response to novel and repeated disturbances	2
Wolbachia confers protection against the entomopathogenic fungus Metarhizium pingshaense in African Aedes aegypti	2
Kinetics and pathways of sub‐lithic microbial community (hypolithon) development	2
Root inoculation with soil‐borne microorganisms alters gut bacterial communities and performance of the leaf‐chewer Spodoptera exigua	2
Embracing complexity in plant–microbiome systems	2
Laboratory Experiments Suggest a Limited Impact of Increased Nitrogen Deposition on Snow Algae Blooms	2
Phototrophic Fe(II) oxidation benefits from light/dark cycles	2
Issue Information	2
Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach	2
Issue Information	2
Three‐domain microbial communities in the gut of Pachnoda marginata larvae: A comparative study revealing opposing trends in gut compartments	2
AHLS‐pred: a novel sequence‐based predictor of acyl‐homoserine‐lactone synthases using machine learning algorithms	2
Interplay of intracellular and trans‐cellular DNA methylation in natural archaeal consortia	2
Multiple plant hormone catabolism activities: an adaptation to a plant‐associated lifestyle by Achromobacter spp.	2
Correction to “SAR11 clade microdiversity and activity during the early spring blooms off Kerguelen Island, Southern Ocean”	2
Stressful, isolated, yet diverse: Green roofs have rich microbiomes that are not dominated by oligotrophic taxa	2
Sulfate and Dissolved Organic Carbon Concentrations Drive Distinct Microbial Community Patterns in Prairie Wetland Ponds	2
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Different patterns of belowground fungal diversity along altitudinal gradients with respect to microhabitat and guild types	2
Deciphering microbial communities involved in marine steel corrosion using high‐throughput amplicon sequencing	2
Distinct oxygen isotope fractionations driven by different electron donors during microbial nitrate reduction in lake sediments	2
Metagenomic analysis of microbial consortia native to the Amazon, Highlands, and Galapagos regions of Ecuador with potential for wastewater remediation	2
The copper resistance mechanism in a newly isolated Pseudoxanthomonas spadixZSY‐33	2
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Complete genome sequence and potential pathogenic assessment of Flavobacterium plurextorumRSG‐18 isolated from the gut of Schlegel's black rockfish, Sebastes schlegelii	2
A preliminary survey of the cellular responses of the black fungus Cryomyces antarcticus to long and short‐term dehydration	2
CORRIGENDUM	2
Bioaerosols in swine confinement buildings: A metaproteomic view	2
Lactic acid bacteria: A sustainable solution against phytopathogenic agents	2
Biogenic silica accumulation in picoeukaryotes: Novel players in the marine silica cycle	2
Young maize plants impact the bacterial community in Australian cotton‐sown vertisol more than agricultural practices	2
Actinorhizal plants and Frankiaceae: The overlooked future of phytoremediation	1
Phaeocystis globosa and diatom blooms promote distinct bacterial communities and associations in a coastal ecosystem	1
Nitrate and oxygen significantly changed the abundance rather than structure of sulphate‐reducing and sulphur‐oxidising bacteria in water retrieved from petroleum reservoirs	1
Salmonella Newport outbreak in Brazilian parrots: confiscated birds from the illegal pet trade as possible zoonotic sources	1
Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803	1
Metatranscriptomic outlook on green and brown food webs in acid mine drainage	1
Studying the microbiome of suppressive soils against vascular wilt, caused by Fusarium oxysporum in cape gooseberry (Physalis peruviana)	1
Phenyl Acid Induced Inhibition of Methanogenesis in CO2 Reducing Organisms	1
Effect of magnetite addition on transcriptional profiles of syntrophic Bacteria and Archaea during anaerobic digestion of propionate in wastewater sludge	1
Heterotrophic bacteria trigger transcriptome remodelling in the photosynthetic picoeukaryote Micromonas commoda	1
Plant‐associatedmicrobiota as a source of antagonistic bacteria against the phytopathogenErwinia amylovora	1
Microbial community succession in steam‐sterilized greenhouses infected with Fusarium oxysporum	1
Adhesion heterogeneity of individual bacterial cells in an axenic culture studied by atomic force microscopy	1
Beauveria felina Accelerates Growth When Competing With Other Potential Endophytes	1
Linking lifestyle and foraging strategies of marine bacteria: selfish behaviour of particle‐attached bacteria in the northern Adriatic Sea	1
Age‐related presence and genetic diversity of Campylobacter spp. in young and adult yellow‐legged gulls (Larus michahellis) in Croatia	1
Comparative metabolic profiling of the mycelium and fermentation broth of Penicillium restrictum from Peucedanum praeruptorum rhizosphere	1
Highlighting the limitations of static microplate biofilm assays for industrial biocide effectiveness compared to dynamic flow conditions	1
The worm affair: fidelity and environmental adaptation in symbiont species that co‐occur in vestimentiferan tubeworms	1
Influence of reef habitat on coral microbial associations	1
Whole cell affinity for 4‐amino‐5‐hydroxymethyl‐2‐methylpyrimidine (HMP) in the marine bacterium CandidatusPelagibacter st. HTCC7211 explains marine dissolved <	1
Profiling microbial communities in an extremely acidic environment influenced by a cold natural carbon dioxide spring: A study of the Mefite in Ansanto Valley, Southern Italy	1
Research progress of anaerobic ammonium oxidation (Anammox) process based on integrated fixed‐film activated sludge (IFAS)	1
Diversity dynamics of aerobic anoxygenic phototrophic bacteria in a freshwater lake	1
Methodological ‘lenses’ influence the characterization of phytoplankton dynamics in a coastal upwelling ecosystem	1
Point‐of‐use carbon‐block drinking water filters change gut microbiome of larval zebrafish	1
Increased antibiotic resistance gene abundance linked to intensive bacterial competition in the phyllosphere across an elevational gradient	1
Root associated fungal lineages of a tropical montane forest show contrasting sensitivities to the long‐term addition of nitrogen and phosphorus	1
Impacts of plastic‐free materials on coral‐associated bacterial communities during reef restoration	1
Halophilic and Non‐Halophilic Microbial Communities in Relation to Physico‐Chemical Characteristics of Salt Mine Air	1
Temperature Requirements Can Affect the Microbial Composition Causing Sour Rot in Grapes	1
Lack of kinship with anaerobes is a kind of short‐sightedness of agricultural and environmental microbiologists	1
The phenotypic and demographic response to the combination of copper and thermal stressors strongly varies within the ciliate species, Tetrahymena thermophila	1
Plasmids in environmental microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	1
Above‐ground parts of white grapevine Vitis vinifera cv. Furmint share core members of the fungal microbiome	1
Climate change and the aquatic continuum: A cyanobacterial comeback story	1
Unique bacterial communities and potential function along the vertical gradient in the deepest marine blue hole	1
Metatranscriptomic shifts suggest shared biodegradation pathways for Corexit 9500 components and crude oil in Arctic seawater	1
The interaction of climate, plant, and soil factors drives putative soil fungal pathogen diversity and community structure in dry grasslands	1
The rhizosphere of a drought‐tolerant plant species in Morocco: A refuge of high microbial diversity with no taxon preference	1
Genomic diversities of ctxB, tcpA and rstR alleles of Vibrio cholerae O139 strains isolated from Odisha, India	1
Ecology and Spatial Distribution of Magnetotactic Bacteria in Araguaia River Floodplain	1
Plastic and terrestrial organic matter degradation by the humic lake microbiome continues throughout the seasons	1
Plasmid pPNptGreen Expression of Green Fluorescent Protein in Pseudomonas chlororaphis Strain S1Bt23 Abrogates Biocontrol Activity Against Pythium ultim	1