OOIR: Observatory of International Research

Papers

(The H4-Index of Database-The Journal of Biological Databases and Curation is 22. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Post-translational modifications in proteins: resources, tools and prediction methods	405
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies	105
bc-GenExMiner 4.5: new mining module computes breast cancer differential gene expression analyses	90
PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation	88
A review on antimicrobial peptides databases and the computational tools	60
Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration	57
GrainGenes: a data-rich repository for small grains genetics and genomics	45
TFLink: an integrated gateway to access transcription factor–target gene interactions for multiple species	42
UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions	40
BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images	40
The World Spider Trait database: a centralized global open repository for curated data on spider traits	38
A Simple Standard for Sharing Ontological Mappings (SSSOM)	38
Curation of over 10 000 transcriptomic studies to enable data reuse	29
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies	28
Human IRES Atlas: an integrative platform for studying IRES-driven translational regulation in humans	28
An overview of graph databases and their applications in the biomedical domain	25
MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses	24
BPPRC database: a web-based tool to access and analyse bacterial pesticidal proteins	23
SynLethDB 2.0: a web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery	23
A roadmap for the functional annotation of protein families: a community perspective	23
Scaling up oligogenic diseases research with OLIDA: the Oligogenic Diseases Database	22
HPVMD-C: a disease-based mutation database of human papillomavirus in China	22