OOIR: Observatory of International Research

Papers

(The TQCC of Epigenetics & Chromatin is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
Losing DNA methylation at repetitive elements and breaking bad	64
Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing	60
The solid and liquid states of chromatin	55
ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation	51
Integration of sperm ncRNA-directed DNA methylation and DNA methylation-directed histone retention in epigenetic transgenerational inheritance	43
Post-translational modifications of PRC2: signals directing its activity	38
BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks	38
Histone N-alpha terminal modifications: genome regulation at the tip of the tail	36
Histone crotonylation-centric gene regulation	34
Evaluation of whole-genome DNA methylation sequencing library preparation protocols	29
HISTome2: a database of histone proteins, modifiers for multiple organisms and epidrugs	28
Histone modifications associated with gene expression and genome accessibility are dynamically enriched at Plasmodium falciparum regulatory sequences	27
Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells	26
Hypoxic in vitro culture reduces histone lactylation and impairs pre-implantation embryonic development in mice	25
Epigenetic regulation of retinal development	24
Chromosome structural variation in tumorigenesis: mechanisms of formation and carcinogenesis	23
Distinct and overlapping roles of STAG1 and STAG2 in cohesin localization and gene expression in embryonic stem cells	23
Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing	23
Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm	22
Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster	19
Structural and functional specificity of H3K36 methylation	19
Regulation of SETD2 stability is important for the fidelity of H3K36me3 deposition	19
Chromatin accessibility maps provide evidence of multilineage gene priming in hematopoietic stem cells	18
DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna	17
Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver	17

A standardized nomenclature for mammalian histone genes	17
Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina	16
The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells	16
Evolutionary adaptation of the Polycomb repressive complex 2	16
Viral histones: pickpocket’s prize or primordial progenitor?	16
Characterization of universal features of partially methylated domains across tissues and species	16
ΔNp63 is a pioneer factor that binds inaccessible chromatin and elicits chromatin remodeling	16
Genome-wide impact of hydrogen peroxide on maintenance DNA methylation in replicating cells	15
Sperm DNA methylation alterations from cannabis extract exposure are evident in offspring	15
Sequencing of methylase-accessible regions in integral circular extrachromosomal DNA reveals differences in chromatin structure	15
GBAF, a small BAF sub-complex with big implications: a systematic review	14
The fibronectin type-III (FNIII) domain of ATF7IP contributes to efficient transcriptional silencing mediated by the SETDB1 complex	14
Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes	14
Making sense of the linear genome, gene function and TADs	14
Functions of HP1 proteins in transcriptional regulation	14
The social construction of the social epigenome and the larger biological context	13
A cookbook for DNase Hi-C	13
Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers	13
Conservation and diversity of the eukaryotic SAGA coactivator complex across kingdoms	13
DAMEfinder: a method to detect differential allele-specific methylation	12
Stable DNMT3L overexpression in SH-SY5Y neurons recreates a facet of the genome-wide Down syndrome DNA methylation signature	12
DNA methylation suppresses chitin degradation and promotes the wing development by inhibiting Bmara-mediated chitinase expression in the silkworm, Bombyx mori	12
Multiple distinct domains of human XIST are required to coordinate gene silencing and subsequent heterochromatin formation	12
Molecular mechanism of histone variant H2A.B on stability and assembly of nucleosome and chromatin structures	12
Epigenomic landscape of enhancer elements during Hydra head organizer formation	12
N6-Adenosine methylation on mRNA is recognized by YTH2 domain protein of human malaria parasite Plasmodium falciparum	12
Ageing-associated changes in DNA methylation in X and Y chromosomes	12
In vivo chromatin organization on native yeast telomeric regions is independent of a cis-telomere loopback conformation	12