Epigenetics & Chromatin

Papers
(The TQCC of Epigenetics & Chromatin is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
The solid and liquid states of chromatin75
Losing DNA methylation at repetitive elements and breaking bad71
Integration of sperm ncRNA-directed DNA methylation and DNA methylation-directed histone retention in epigenetic transgenerational inheritance56
Hypoxic in vitro culture reduces histone lactylation and impairs pre-implantation embryonic development in mice39
Evaluation of whole-genome DNA methylation sequencing library preparation protocols38
Histone crotonylation-centric gene regulation38
Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells33
Histone modifications associated with gene expression and genome accessibility are dynamically enriched at Plasmodium falciparum regulatory sequences31
Structural and functional specificity of H3K36 methylation31
Epigenetic regulation of retinal development27
The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells27
Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster26
Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing26
Chromosome structural variation in tumorigenesis: mechanisms of formation and carcinogenesis25
Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm25
A standardized nomenclature for mammalian histone genes24
Viral histones: pickpocket’s prize or primordial progenitor?23
Chromatin accessibility maps provide evidence of multilineage gene priming in hematopoietic stem cells23
ΔNp63 is a pioneer factor that binds inaccessible chromatin and elicits chromatin remodeling22
Functions of HP1 proteins in transcriptional regulation22
Effects of paternal exposure to cigarette smoke on sperm DNA methylation and long-term metabolic syndrome in offspring21
Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers20
Making sense of the linear genome, gene function and TADs20
Conservation and diversity of the eukaryotic SAGA coactivator complex across kingdoms19
Sperm DNA methylation alterations from cannabis extract exposure are evident in offspring19
DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna18
Genome-wide impact of hydrogen peroxide on maintenance DNA methylation in replicating cells18
Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina18
GBAF, a small BAF sub-complex with big implications: a systematic review18
Changes in chromatin accessibility landscape and histone H3 core acetylation during valproic acid-induced differentiation of embryonic stem cells17
Sequencing of methylase-accessible regions in integral circular extrachromosomal DNA reveals differences in chromatin structure17
Evolutionary adaptation of the Polycomb repressive complex 217
A cookbook for DNase Hi-C16
Contribution of genetic and epigenetic changes to escape from X-chromosome inactivation16
Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle15
The zinc finger protein CLAMP promotes long-range chromatin interactions that mediate dosage compensation of the Drosophila male X-chromosome15
The fibronectin type-III (FNIII) domain of ATF7IP contributes to efficient transcriptional silencing mediated by the SETDB1 complex14
Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation14
Multiple distinct domains of human XIST are required to coordinate gene silencing and subsequent heterochromatin formation13
Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes13
Pan-cancer predictions of transcription factors mediating aberrant DNA methylation13
The regional sequestration of heterochromatin structural proteins is critical to form and maintain silent chromatin13
Histone H3.3 K27M chromatin functions implicate a network of neurodevelopmental factors including ASCL1 and NEUROD1 in DIPG13
Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C13
Chromatin alterations during the epididymal maturation of mouse sperm refine the paternally inherited epigenome13
Stable DNMT3L overexpression in SH-SY5Y neurons recreates a facet of the genome-wide Down syndrome DNA methylation signature12
H3K36 methylation reprograms gene expression to drive early gametocyte development in Plasmodium falciparum12
Ethionine-mediated reduction of S-adenosylmethionine is responsible for the neural tube defects in the developing mouse embryo-mediated m6A modification and is involved in neural tube defects via modu12
The role of MORC3 in silencing transposable elements in mouse embryonic stem cells12
Ageing-associated changes in DNA methylation in X and Y chromosomes12
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