OOIR: Observatory of International Research

Papers

(The H4-Index of Molecular Ecology Resources is 37. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics	749
ASAP: assemble species by automatic partitioning	541
Dsuite ‐ Fast D‐statistics and related admixture evidence from VCF files	306
genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids	201
pixy: Unbiased estimation of nucleotide diversity and divergence in the presence of missing data	197
CPGView: A package for visualizing detailed chloroplast genome structures	149
Genetic structure and insecticide resistance characteristics of fall armyworm populations invading China	113
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise	92
The genetic adaptations of fall armyworm Spodoptera frugiperda facilitated its rapid global dispersal and invasion	87
Moving eDNA surveys onto land: Strategies for active eDNA aggregation to detect invasive forest insects	65
A metagenomic assessment of microbial eukaryotic diversity in the global ocean	59
Evaluation of primer pairs for microbiome profiling from soils to humans within the One Health framework	56
Extending approximate Bayesian computation with supervised machine learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest	56
Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding	53
SCycDB: A curated functional gene database for metagenomic profiling of sulphur cycling pathways	50
Reference genome and demographic history of the most endangered marine mammal, the vaquita	50
Experimental support for genomic prediction of climate maladaptation using the machine learning approach Gradient Forests	48
A demonstration of conservation genomics for threatened species management	46
Chromosome‐level analysis of the Crassostrea hongkongensis genome reveals extensive duplication of immune‐related genes in bivalves	44
Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses	44
Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation	44
Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem	43
Construction of a chromosome‐level genome and variation map for the Pacific oyster Crassostrea gigas	43
Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica)	42
bitacora: A comprehensive tool for the identification and annotation of gene families in genome assemblies	41

Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot	40
Chromosomal‐level genomes of three rice planthoppers provide new insights into sex chromosome evolution	40
A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes	40
A high‐quality genome assembly of the eggplant provides insights into the molecular basis of disease resistance and chlorogenic acid synthesis	39
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding	39
Improving the reliability of eDNA data interpretation	38
Combining genotype, phenotype, and environmental data to delineate site‐adjusted provenance strategies for ecological restoration	38
Evaluation of model fit of inferred admixture proportions	38
Automatic inference of demographic parameters using generative adversarial networks	38
eDNAFlow, an automated, reproducible and scalable workflow for analysis of environmental DNA sequences exploiting Nextflow and Singularity	37
DiversityScanner: Robotic handling of small invertebrates with machine learning methods	37
The quest for absolute abundance: The use of internal standards for DNA‐based community ecology	37