Evolutionary Applications

Article	Citations
Genetic mixing for population management: From genetic rescue to provenancing	86
Socio‐eco‐evolutionary dynamics in cities	85
The evolutionary consequences of human–wildlife conflict in cities	72
Prospects and limitations of genomic offset in conservation management	70
The genic view of hybridization in the Anthropocene	59
Phenotypic plasticity under rapid global changes: The intrinsic force for future seagrasses survival	58
Identifying key questions in the ecology and evolution of cancer	56
Genetic load has potential in large populations but is realized in small inbred populations	55
Urbanization is associated with shifts in bumblebee body size, with cascading effects on pollination	54
Making sense of Integrated Pest Management (IPM) in the light of evolution	53
The evolutionary dynamics of biological invasions: A multi‐approach perspective	49
Recent and rapid anthropogenic habitat fragmentation increases extinction risk for freshwater biodiversity	43
On the estimation of inbreeding depression using different measures of inbreeding from molecular markers	35
Endometriosis and polycystic ovary syndrome are diametric disorders	34
Why women have more autoimmune diseases than men: An evolutionary perspective	33
Comparative genomics approach to evolutionary process connectivity	32
Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)	32
Seeing the forest for the trees: Assessing genetic offset predictions from gradient forest	32
Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data	32
Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration	31
An epigenetic clock to estimate the age of living beluga whales	31
Global phylogeography and invasion history of the spotted lanternfly revealed by mitochondrial phylogenomics	30
Population expansion and genomic adaptation to agricultural environments of the soybean looper, Chrysodeixis includens	30
SARS‐CoV‐2, an evolutionary perspective of interaction with human ACE2 reveals undiscovered amino acids necessary for complex stability	30
Design and analysis of CRISPR‐based underdominance toxin‐antidote gene drives	29

Insecticide exposure affects intergenerational patterns of DNA methylation in the Colorado potato beetle, Leptinotarsa decemlineata	29
Genomic analysis reveals neutral and adaptive patterns that challenge the current management regime for East Atlantic cod Gadus morhua L	29
Growing in the city: Urban evolutionary ecology of avian growth rates	29
Contrasted patterns of local adaptation to climate change across the range of an evergreen oak, Quercus aquifolioides	28
Cancer therapy: Attempt cure or manage drug resistance?	28
Urbanization is associated with modifications in DNA methylation in a small passerine bird	26
Adaptation to drought is coupled with slow growth, but independent from phenology in marginal silver fir (Abies alba Mill.) populations	26
An evaluation of the potential factors affecting lifetime reproductive success in salmonids	26
Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote north‐west Australia	25
Population genomics and history of speciation reveal fishery management gaps in two related redfish species (Sebastes mentella and Sebastes fasciatus)	24
Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies	24
Size reductions and genomic changes within two generations in wild walleye populations: associated with harvest?	24
Widespread genetic connectivity of feral pigeons across the Northeastern megacity	24
Natural history collections are critical resources for contemporary and future studies of urban evolution	22
Genomic selection for resistance to spruce budworm in white spruce and relationships with growth and wood quality traits	22
Urban evolution comes into its own: Emerging themes and future directions of a burgeoning field	22
First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (Oplegnathus fasciatus)	22
Towards evolutionary predictions: Current promises and challenges	21
Whole‐genome SNP markers reveal conservation status, signatures of selection, and introgression in Chinese Laiwu pigs	21
Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome	21
Whole‐exome sequencing reveals a long‐term decline in effective population size of red spruce (Picea rubens)	20
“Andif you gaze long into an abyss, the abyss gazes also into thee”: four morphs of Arctic charr adapting to a depth gradient in Lake Tinnsjøen	20
Can CRISPR gene drive work in pest and beneficial haplodiploid species?	20
Migration dynamics of an important rice pest: The brown planthopper (Nilaparvata lugens) across Asia—Insights from population genomics	20
Negative relationship between thermal tolerance and plasticity in tolerance emerges during experimental evolution in a widespread marine invertebrate	20
The genomic signal of local environmental adaptation in Aedes aegypti mosquitoes	20
Evolutionary responses of marine organisms to urbanized seascapes	20
Increasing temperature elevates the variation and spatial differentiation of pesticide tolerance in a plant pathogen	20
Urbanization reduces gene flow but not genetic diversity of stream salamander populations in the New York City metropolitan area	20
Cross‐species transmission of deltacoronavirus and the origin of porcine deltacoronavirus	20
Charting a course for genetic diversity in the UN Decade of Ocean Science	19
Whole‐genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations	19
Validation and association of candidate markers for adult migration timing and fitness in Chinook Salmon	19
Mixed‐stock analysis using Rapture genotyping to evaluate stock‐specific exploitation of a walleye population despite weak genetic structure	19
Estimating the contribution of Greenland Halibut (Reinhardtius hippoglossoides) stocks to nurseries by means of genotyping‐by‐sequencing: Sex and time matter	19
Eight generations of native seed cultivation reduces plant fitness relative to the wild progenitor population	19
Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales)	19
The dimensions of evolutionary potential in biological conservation	19
Historic and modern genomes unveil a domestic introgression gradient in a wild red junglefowl population	19
Genetic consequences of long‐term small effective population size in the critically endangered pygmy hog	19
Genomic insights into historical population dynamics, local adaptation, and climate change vulnerability of the East Asian Tertiary relict Euptelea (Eupteleaceae)	19
Steelhead (Oncorhynchus mykiss) lineages and sexes show variable patterns of association of adult migration timing and age‐at‐maturity traits with two genomic regions	19
Maintenance of variation in virulence and reproduction in populations of an agricultural plant pathogen	19
Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation	18
Assessing adaptive and plastic responses in growth and functional traits in a 10‐year‐old common garden experiment with pedunculate oak (Quercus robur L.) suggests that directional selection ca	18
Comparison of genomic diversity and structure of sable antelope (Hippotragus niger) in zoos, conservation centers, and private ranches in North America	18
Conserving the genetic diversity of condemned populations: Optimizing collections and translocation	17
Evolution and genetics of bighead and silver carps: Native population conservation versus invasive species control	17
Population genomics of invasive rodents on islands: Genetic consequences of colonization and prospects for localized synthetic gene drive	17
Incomplete bioinformatic filtering and inadequate age and growth analysis lead to an incorrect inference of harvested‐induced changes	17

Gene drive strategies of pest control in agricultural systems: Challenges and opportunities	17
Genomic selection applications can improve the environmental performance of aquatics: A case study on the heat tolerance of abalone	17
Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?	17
Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish	17
Past, present and future contributions of evolutionary biology to wildlife forensics, management and conservation	17
COVID‐19 disruption reveals mass‐tourism pressure on nearshore sea turtle distributions and access to optimal breeding habitat	17
How does contemporary selection shape oak phenotypes?	17
Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models	17
Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation	17
Evaluating the probability of CRISPR‐based gene drive contaminating another species	17
Spatial population genetics in heavily managed species: Separating patterns of historical translocation from contemporary gene flow in white‐tailed deer	16
Human‐modified canids in human‐modified landscapes: The evolutionary consequences of hybridization for grey wolves and free‐ranging domestic dogs	16
Lower bioenergetic costs but similar immune responsiveness under a heat wave in urban compared to rural damselflies	16
Something old, something new: Evolution of Colombian weedy rice (Oryza spp.) through de novo de‐domestication, exotic gene flow, and hybridization	16
Effects of global warming on species with temperature‐dependent sex determination: Bridging the gap between empirical research and management	16
The ghosts of propagation past: haplotype information clarifies the relative influence of stocking history and phylogeographic processes on contemporary population structure of walleye (Sander vitr	15
Multicentric origin and diversification of atp6‐orf79‐like structures reveal mitochondrial gene flows in Oryza rufipogon and Oryza sativa	15
Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression	15
Predation shapes the impact of cancer on population dynamics and the evolution of cancer resistance	15
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	15
Evolution of manipulative microbial behaviors in the rhizosphere	15
Introgression of domesticated salmon changes life history and phenology of a wild salmon population	15
Subspecies hybridization as a potential conservation tool in species reintroductions	15
A continuously changing selective context on microbial communities associated with fish, from egg to fork	15
Evidence of unidirectional hybridization and second‐generation adult hybrid between the two largest animals on Earth, the fin and blue whales	15
Variable resistance to spinetoram in populations of Thrips palmi across a small area unconnected to genetic similarity	15
Multi‐seasonal modelling of plant‐nematode interactions reveals efficient plant resistance deployment strategies	15
Artificial selection for nonreproductive host killing in a native parasitoid on the invasive pest, Drosophila suzukii	15
Researching on the fine structure and admixture of the worldwide chicken population reveal connections between populations and important events in breeding history	15
A genomic amplification affecting a carboxylesterase gene cluster confers organophosphate resistance in the mosquito Aedes aegypti: From genomic characterization to high‐throughput field detect	15
Breeding for adaptation to climate change: genomic selection for drought response in a white spruce multi‐site polycross test	15
The role of host environment in cancer evolution	15
Epigenetics and the city: Non‐parallel DNA methylation modifications across pairs of urban‐forest Great tit populations	15
Gut microbiomes of bigheaded carps and hybrids provide insights into invasion: A hologenome perspective	15
Evolutionary legacy of a forest plantation tree species (Pinus armandii): Implications for widespread afforestation	14
Symmetric response to competition in binary mixtures of cultivars associates with genetic gain in wheat yield	14
Pedal to the metal: Cities power evolutionary divergence by accelerating metabolic rate and locomotor performance	14
Supporting the adaptive capacity of species through more effective knowledge exchange with conservation practitioners	14
Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine	14
Sex‐ and time‐specific parental effects of warming on reproduction and offspring quality in a coral reef fish	14
Genomic population structure of Striped Bass (Morone saxatilis) from the Gulf of St. Lawrence to Cape Fear River	14
Genome‐wide insights into introgression and its consequences for genome‐wide heterozygosity in the Mytilus species complex across Europe	14
Marine food web perspective to fisheries‐induced evolution	14
Controlling evolutionary dynamics to optimize microbial bioremediation	14
Transcriptional flexibility during thermal challenge corresponds with expanded thermal tolerance in an invasive compared to native fish	14
Genetic structure across urban and agricultural landscapes reveals evidence of resource specialization and philopatry in the Eastern carpenter bee, Xylocopa virginica L.	14
Long‐term exposure to increasing temperature can offset predicted losses in marine food quality (fatty acids) caused by ocean warming	14
Selective sweep analysis reveals extensive parallel selection traits between large white and Duroc pigs	14
Demonstration of local adaptation in maize landraces by reciprocal transplantation	14
Resolving Peto’s paradox: Modeling the potential effects of size‐related metabolic changes, and of the evolution of immune policing and cancer suppression	14
Evidence for the evolution of thermal tolerance, but not desiccation tolerance, in response to hotter, drier city conditions in a cosmopolitan, terrestrial isopod	14
The relevance of genetic structure in ecotype designation and conservation management	14
Niche‐neutral theoretic approach to mechanisms underlying the biodiversity and biogeography of human microbiomes	13
Multiple‐batch spawning as a bet‐hedging strategy in highly stochastic environments: An exploratory analysis of Atlantic cod	13
Genomic survey of edible cockle (Cerastoderma edule) in the Northeast Atlantic: A baseline for sustainable management of its wild resources	13
Gene flow as a simple cause for an excess of high‐frequency‐derived alleles	13
Tracking invasions of a destructive defoliator, the gypsy moth (Erebidae: Lymantria dispar): Population structure, origin of intercepted specimens, and Asian introgression into North America	13
Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest	13
A comparison of microsatellites and genome‐wide SNPs for the detection of admixture brings the first molecular evidence for hybridization between Mustela eversmanii and M. putorius (Must	13
Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish	13
Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon	13
Sarcoptic mange severity is associated with reduced genomic variation and evidence of selection in Yellowstone National Park wolves (Canis lupus)	13
Up in the air: Threats to Afromontane biodiversity from climate change and habitat loss revealed by genetic monitoring of the Ethiopian Highlands bat	13
Cross‐species transmission of retroviruses among domestic and wild felids in human‐occupied landscapes in Chile	13
Implications of size‐selective fisheries on sexual selection	13
Population genomic data in spider mites point to a role for local adaptation in shaping range shifts	13
Barriers and corridors of gene flow in an urbanized tropical reef system	13
Rapid evolution of knockdown resistance haplotypes in response to pyrethroid selection in Aedes aegypti	13
Reduced relative fitness in hatchery‐origin Pink Salmon in two streams in Prince William Sound, Alaska	13
Genomic signatures of artificial selection in the Pacific oyster, Crassostrea gigas	13
Reticulate evolution as a management challenge: Patterns of admixture with phylogenetic distance in endemic fishes of western North America	13
Whole‐genome resequencing reveals signature of local adaptation and divergence in wild soybean	13
Evolutionary mechanisms underpinning fitness response to multiple stressors in Daphnia	13
Rapid morphological change in multiple cichlid ecotypes following the damming of a major clearwater river in Brazil	13
Selection against individuals from genetic introgression of escaped farmed salmon in a natural population of Atlantic salmon	13
Host plants and Wolbachia shape the population genetics of sympatric herbivore populations	13
Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species	13
Dispersal ability predicts spatial genetic structure in native mammals persisting across an urbanization gradient	13
Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere	12
Commercial implementation of genomic selection in Tasmanian Atlantic salmon: Scheme evolution and validation	12

Local adaptation to precipitation in the perennial grass Elymus elymoides: Trade‐offs between growth and drought resistance traits	12
Overcoming the growth–infectivity trade‐off in a bacteriophage slows bacterial resistance evolution	12
Ageing European lobsters (Homarus gammarus) using DNA methylation of evolutionarily conserved ribosomal DNA	12
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex	12
Adaptive genetic potential and plasticity of trait variation in the foundation prairie grass Andropogon gerardii across the US Great Plains’ climate gradient: Implications for climate change an	12
Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	12
An epigeneticDNAmethylation clock for age estimates inIndo‐Pacificbottlenose dolphins (Tursiops aduncus)	12
Climate‐induced range shifts shaped the present and threaten the future genetic variability of a marine brown alga in the Northwest Pacific	12
Selection on fish personality differs between a no‐take marine reserve and fished areas	12
Using genetic relatedness to understand heterogeneous distributions of urban rat‐associated pathogens	12
Incipient resistance to an effective pesticide results from genetic adaptation and the canalization of gene expression	12
Unusual evolution of tree frog populations in the Chernobyl exclusion zone	12
Diallelic self‐incompatibility is the main determinant of fertilization patterns in olive orchards	12
Parentage‐based tagging combined with genetic stock identification is a cost‐effective and viable replacement for coded‐wire tagging in large‐scale assessments of marine Chinook salmon fisheries in Br	12
Applied phyloepidemiology: Detecting drivers of pathogen transmission from genomic signatures using density measures	11
Collagen production and niche engineering: A novel strategy for cancer cells to survive acidosis in DCIS and evolve	11
Biological control needs evolutionary perspectives of ecological interactions	11
Chromosome‐level reference genome for European flat oyster (Ostrea edulis L.)	11
Male frequency in Caenorhabditis elegans increases in response to chronic irradiation	11
Introduced populations of ragweed show as much evolutionary potential as native populations	11
Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome‐wide association mapping	11
Rapid adaptation through genomic and epigenomic responses following translocations in an endangered salmonid	11
Projecting introgression from domestic cats into European wildcats in the Swiss Jura	11
Genome‐wide analysis reveals the genetic stock structure of hoki (Macruronus novaezelandiae)	11
When, why and how tumour clonal diversity predicts survival	11
Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	11
The genome of the Pyrenean desman and the effects of bottlenecks and inbreeding on the genomic landscape of an endangered species	11
Selection and introgression facilitated the adaptation of Chinese native endangered cattle in extreme environments	11
Transcriptomic divergence between upland and lowland ecotypes contributes to rice adaptation to a drought‐prone agroecosystem	11
Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere	11
Gene drive escape from resistance depends on mechanism and ecology	10
Harnessing paleo‐environmental modeling and genetic data to predict intraspecific genetic structure	10
Extent of polymorphism and selection pressure on the Trypanosoma cruzi vaccine candidate antigen Tc24	10
Do aphids in Dutch sweet pepper greenhouses carry heritable elements that protect them against biocontrol parasitoids?	10
Demographic history and genomics of local adaptation in blue tit populations	10
Insect–plant relationships predict the speed of insecticide adaptation	10
Genetic data and climate niche suitability models highlight the vulnerability of a functionally important plant species from south‐eastern Australia	10
Marine protected areas rescue a sexually selected trait in European lobster	10
Intraspecific variation in landform engineering across a restored salt marsh shoreline	10
Selection of sites for field trials of genetically engineered mosquitoes with gene drive	10
Long‐term urbanization impacts the eastern golden frog (Pelophylax plancyi) in Shanghai City: Demographic history, genetic structure, and implications for amphibian conservation in intensively	10
Extent and direction of introgressive hybridization of mule and white‐tailed deer in western Canada	10
Interplay between genetic, epigenetic, and gene expression variability: Considering complexity in evolvability	10
Shift in beneficial interactions during crop evolution	10
Conservation insights from wild bee genetic studies: Geographic differences, susceptibility to inbreeding, and signs of local adaptation	10
Transcriptional frontloading contributes to cross‐tolerance between stressors	10
Ten years of demographic modelling of divergence and speciation in the sea	10
Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle	10
Cancer suppression and the evolution of multiple retrogene copies of TP53 in elephants: A re‐evaluation	10
Using historical genome‐wide DNA to unravel the confused taxonomy in a songbird lineage that is extinct in the wild	10
Genomics applied to livestock and aquaculture breeding	10
Population genomics and phylogeography of the boll weevil, Anthonomus grandis Boheman (Coleoptera: Curculionidae), in the United States, northern Mexico, and Argentina	10
Genomic region associated with run timing has similar haplotypes and phenotypic effects across three lineages of Chinook salmon	10
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture	10
After a catastrophe, a little bit of sex is better than nothing: Genetic consequences of a major earthquake on asexual and sexual populations	10
Population genomics of free‐ranging Great Plains white‐tailed and mule deer reflects a long history of interspecific hybridization	10