Evolutionary Applications

Article	Citations
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Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses	47
Genetic Signatures of Contrasted Outbreak Histories of “Candidatus Liberibacter asiaticus”, the Bacterium That Causes Citrus Huanglongbing, in Three Outermost Regions of the European Union	40
Genomic insights into local adaptation in the Asiatic toad Bufo gargarizans, and its genomic offset to climate warming	39
Comparison of bacterial suppression by phage cocktails, dual‐receptor generalists, and coevolutionarily trained phages	36
Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish	36
Genomic Evidence for the Purging of Deleterious Genetic Variation in the Endangered North Atlantic Right Whale	35
Reliability of trans‐generational genetic mark–recapture (tGMR) for enumerating Pacific salmon	34
Factors Beyond Karstification Have Shaped the Population Structure of a Surface‐Dwelling Minnow (Phoxinus lumaireul) Able to Disperse Underground	33
Genetic and Habitat Rescue Improve Population Viability in Self‐Incompatible Plants	30
Genomic and environmental influences on resilience in a cold‐water fish near the edge of its range	30
Identifying and testing marker–trait associations for growth and phenology in three pine species: Implications for genomic prediction	28
Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration	28
Reciprocal Host– Wolbachia Interactions Shape Infection Persistence Upon Loss of Cytoplasmic Incompatibility in Haplodiploids	28
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Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	27
Climatic oscillation promoted diversification of spinous assassin bugs during Pleistocene glaciation	26
Evolutionary View of Liver Pathology	26
The effect of metal remediation on the virulence and antimicrobial resistance of the opportunistic pathogen Pseudomonas aeruginosa	26
Population genomics of the basket cockle Clinocardium nuttallii in the southern Salish Sea: Assessing genetic risks of stock enhancement for a culturally important marine bivalve	25
Low genetic diversity, local‐scale structure, and distinct genetic integrity of Korean chum salmon (Oncorhynchus keta) at the species range margin suggest a priority for conservation efforts	25
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Rich resource environment of fish farms facilitates phenotypic variation and virulence in an opportunistic fish pathogen	25

Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish	24
Cancer suppression and the evolution of multiple retrogene copies of TP53 in elephants: A re‐evaluation	24
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Signatures of selection in Mulinia lateralis underpinning its rapid adaptation to laboratory conditions	24
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Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle	23
Dispersal and Gene Flow Among Potential Spawners: Source–Sink Structure Among Populations of Anadromous Brown Trout Exposed to Multifaceted Anthropogenic Impacts	23
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Evidence of Fine‐Scale Genetic Structure in Tiger Sharks (Galeocerdo cuvier) Highlights the Importance of Stratified Sampling Regimes	22
Genome of Kumamoto Oyster Crassostrea sikamea Provides Insights Into Bivalve Evolution and Environmental Adaptation	21
Local environments, not invasive hybridization, influence cardiac performance of native trout under acute thermal stress	21
Conservation and the genomics of populations, 3rd edition, Allendorf F. W., Funk W. C., Aitken S. N., Byrne M., Luikart G.	21
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Independently evolved pollution resistance in four killifish populations is largely explained by few variants of large effect	21
Lineage Differentiation and Genomic Vulnerability in a Relict Tree From Subtropical Forests	21
Competitive interactions affect introgression and population viability amidst maladaptive hybridization	21
Transgenerational effects on body size and survival in Brook charr (Salvelinus fontinalis)	20
Population origin determines the adaptive potential for the advancement of flowering onset in Lupinus angustifolius L. (Fabaceae)	20
Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River	19
A Genome‐Wide Analysis of Structure and Evolution in Irish and British Populations of Bombus terrestris (L. 1758): Implications for Genetic Resource Conservation	19
Maintaining Local Adaptation Is Key for Evolutionary Rescue and Long‐Term Persistence of Populations Experiencing Habitat Loss and a Changing Environment	19
Early queen joining and long‐term queen associations in polygyne colonies of an invasive wasp revealed by longitudinal genetic analysis	19
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Contrasting effect of hybridization on genetic differentiation in three rockfish species with similar life history	19
From Individual to Stand Performance in Hybrids: Challenging the Optimal Parental Genetic Distance	19
More evolvable bacteriophages better suppress their host	19
The influence of genetic architecture on responses to selection under drought in rice	19
Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control	19
An evolutionary perspective on increasing net benefits to crops from symbiotic microbes	19
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Genotype–environment associations across spatial scales reveal the importance of putative adaptive genetic variation in divergence	18
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Linking Measures of Inbreeding and Genetic Load to Demographic Histories Across Three Species of Bears	18
A cryptic syngameon withinBetulashrubs revealed: Implications for conservation in changing subarctic environments	18
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Impact of putatively beneficial genomic loci on gene expression in little brown bats (Myotis lucifugus, Le Conte, 1831) affected by white‐nose syndrome	17
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Effective population size in a partially clonal plant is not predicted by the number of genetic individuals	17
Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	17
Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression	17
Application of Genomic Offsets to Inform Freshwater Fisheries Management Under Climate Change	16
The effect of parental age on the quantity and quality of offspring in Syngnathus typhle, a species with male pregnancy	16
Population Patterns and Dynamics of Ilisha elongata (Clupeiformes: Pristigasteridae) Revealed by Target Enrichment Data	16
Genetic Consequences of Tree Planting Versus Natural Colonisation: Implications for Afforestation Programmes in the United Kingdom	16
Comparing Genetic Ne Reconstructions Over Time With Long‐Time Wolf Monitoring Data in Two Populations	16
Genomic Prediction for Growth‐Related Traits in Golden Pompano (Trachinotus ovatus)	16
Between the Cape Fold Mountains and the deep blue sea: Comparative phylogeography of selected codistributed ectotherms reveals asynchronous cladogenesis	15
Genomic prediction based on preselected single‐nucleotide polymorphisms from genome‐wide association study and imputed whole‐genome sequence data annotation for growth traits in Duroc pigs	15
Genome‐wide SNPs of vegetable leafminer, Liriomyza sativae: Insights into the recent Australian invasion	15

The Influence of Spatial Distance and Environment on Small‐Scale Genetic Variability in Eelgrass and Its Application for Restoration	15
Ecology of Gene Drives: The Role of Density‐Dependent Feedbacks on the Efficacy and Dynamics of Two‐Locus Underdominance Gene Drive Systems	15
Range‐wide population genomics of the spongy moth, Lymantria dispar (Erebidae): Implications for biosurveillance, subspecies classification and phylogeography of a destructive moth	15
Assessing genotype–environment interactions in Atlantic salmon reared in freshwater loch and recirculating systems	15
Biological control needs evolutionary perspectives of ecological interactions	15
A cytochrome P450 insecticide detoxification mechanism is not conserved across the Megachilidae family of bees	15
Utility and challenges of using whole‐genome resequencing to detect emerging insect and mite resistance in agroecosystems	15
Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic	15
Breeding for adaptation to climate change: genomic selection for drought response in a white spruce multi‐site polycross test	15
Membrane Lipid Remodeling Strategies Regulate Fluidity for Acute Temperature Adaptation in Oysters	15
Comparative Transcriptomic Reveals Greater Similarities in Response to Temperature Than to Invasive Alien Predator in the Damselfly Ischnura elegans Across Different Geographic Scales	15
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Genetic structure and first genome‐wide insights into the adaptation of a wild relative of grapevine, Vitis berlandieri	14
Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes	14
A Trade‐Off Between Antimicrobial Peptide Resistance and Sensitivity to Host Immune Effectors in Staphylococcus aureus In Vivo	14
A decade of progress in marine evolutionary biology	14
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Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)	14
Genomic Signatures of Climate‐Driven (Mal)Adaptation in an Iconic Conifer, the English Yew ( Taxus baccata L.)	14
Fine‐scale population structure of the northern hard clam (Mercenaria mercenaria) revealed by genome‐wide SNP markers	14
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Genomic Analysis Reveals Inbreeding in an Island Population of Alexander Archipelago Wolves	13
Genomic regions and candidate genes selected during the breeding of rice in Vietnam	13
Time Constraints Modulate the Effects of Predator Cues and a Metal Across Life Stages in a Damselfly	13
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Different mechanisms underpin the decline in growth of anchovies and sardines of the Bay of Biscay	13
Consistent variations in personality traits and their potential for genetic improvement in biocontrol agents: Trichogramma evanescens as a case study	13
Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle	13
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Genomics reveal the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range	13
Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine	13
Genetic evidence of a hybrid swarm between Alpine ibex (Capra ibex) and domestic goat (C. hircus)	12
A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae	12
Evolutionary Genomics Provides Insights Into Endangerment and Conservation of a Wild Apple Tree Species, Malus sieversii	12
Leveraging the genetic diversity of trout in the rivers of the British Isles and northern France to understand the movements of sea trout (Salmo trutta L.) around the English Channel	12
Genomic selection reveals hidden relatedness and increased breeding efficiency in western redcedar polycross breeding	12
Unveiling invisible farm‐to‐farmPRRSV‐2 transmission links and routes through transmission tree and network analysis	12
A single generation in the wild increases fitness for descendants of hatchery‐origin Chinook salmon (Oncorhynchus tshawytscha)	12
Genomic vulnerability of a freshwater salmonid under climate change	12
Virulence Evolution: Thinking Outside of the Host	12
Genetic consequences of improved river connectivity in brown trout (Salmo trutta L.)	12
Do Sex Ratio Distorting Microbes Inhibit the Evolution of Pesticide Resistance? An Experimental Test	12
Carry‐over effects and fitness trade‐offs in marine life histories: The costs of complexity for adaptation	12
Genomic and Physiological Basis of Structural and Foliar Trait Variation in Tropical Species Pterocarpus officinalis: Implications for Restoration in Future Drier Climates	12
Differential expression analyses reveal extensive transcriptional plasticity induced by temperature in New Zealand silver trevally (Pseudocaranx georgianus)	11
Meeting Report on the Symposium “Evolutionary Applications” at the 3rd Joint Congress on Evolutionary Biology	11
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Genetic rescue from protected areas is modulated by migration, hunting rate, and timing of harvest	11
Landscape Heterogeneity and Environmental Dynamics Improve Predictions of Establishment Success of Colonising Small Founding Populations	11
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Effective Population Size Estimation in Large Marine Populations: Considering Current Challenges and Opportunities When Simulating Large Data Sets With High‐Density Genomic Information	11
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Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida scrub jays,Aphelocoma coerulescens	10
Evolution in Response to Management Increases Invasiveness Among Experimental Populations of Duckweed (Lemna minor)	10
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Assessing the invasive potential of different source populations of ragweed (Ambrosia artemisiifoliaL.) through genomically informed species distribution modelling	10
Genome‐Wide Diversity in Lowland and Highland Maize Landraces From Southern South America: Population Genetics Insights to Assist Conservation	10
Adaptive Potential of Syzygium maire , a Critically Threatened Habitat Specialist Tree Species in Aotearoa New Zealand	10
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Planting long‐lived trees in a warming climate: Theory shows the importance of stage‐dependent climatic tolerance	10
Evolution of reproductive life‐history and dispersal traits during the range expansion of a biological control agent	10
Endangered Pinto/Northern Abalone (Haliotis kamtschatkana) are Panmictic Across Their 3700 km Range Along the Pacific Coast of North America	10
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A genomic region associated with iteroparous spawning phenology is linked with age‐at‐maturity in female steelhead trout	10
Evidence of hard‐selective sweeps suggests independent adaptation to insecticides in Colorado potato beetle (Coleoptera: Chrysomelidae) populations	9
SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array	9
Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models	9
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Population genetic structure of the carrot weevil (Listronotus oregonensis) in North America	9
Dealing With Assumptions and Sampling Bias in the Estimation of Effective Population Size: A Case Study in an Amphibian Population	9
Population demographic history and evolutionary rescue: Influence of a bottleneck event	9
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	9
Population genomics, life‐history tactics, and mixed‐stock subsistence fisheries in the northernmost American Atlantic salmon populations	9

The genetic legacy of the first successful reintroduction of a mammal to Britain: Founder events and attempted genetic rescue in Scotland's beaver population	9
Limited gains in native parasitoid performance on an invasive host beyond three generations of selection	9
Ten years of demographic modelling of divergence and speciation in the sea	9
The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution	9
The cost of host genetic resistance on body condition: Evidence from divergently selected sheep	9
Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree	9
Spatial and temporal patterns in the population genomics of the European cockchafer Melolontha melolontha in the Alpine region	9
Niche breadth and divergence in sympatric cryptic coral species (Pocillopora spp.) across habitats within reefs and among algal symbionts	9
When Do Tumours Develop? Neoplastic Processes Across Different Timescales: Age, Season and Round the Circadian Clock	9
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A diverse parasite pool can improve effectiveness of biological control constrained by genotype‐by‐genotype interactions	9
Genomic Basis and Climate Change Vulnerability of Migration Timing in Atlantic Salmon ( Salmo salar )	9
Multiple Stressors in the Anthropocene: Urban Evolutionary History Modifies Sensitivity to the Toxic Effects of Crude Oil Exposure in Killifish	9
Local Adaptation and Climate Change Vulnerability of the Relict Tree Species Taiwania cryptomerioides Provide Insights Into Its Conservation and Restoration	9
Do biological control agents adapt to local pest genotypes? A multiyear test across geographic scales	8
Evidence of hybridization between genetically distinct Baltic cod stocks during peak population abundance(s)	8
Balancing Inbreeding and Outbreeding Risks to Inform Translocations Throughout the Range of an Imperiled Darter	8
Genome‐wide analysis of natural and restored eastern oyster populations reveals local adaptation and positive impacts of planting frequency and broodstock number	8
Fine‐Scale Variation in Soil Properties Promotes Local Taxonomic Diversity of Hybridizing Oak Species (Quercus spp.)	8
A lack of genetic diversity and minimal adaptive evolutionary divergence in introduced Mysis shrimp after 50 years	8
Modeling of senescent cell dynamics predicts a late‐life decrease in cancer incidence	8
Hidden but revealed: After years of genetic studies behavioural monitoring combined with genomics uncover new insight into the population dynamics of Atlantic cod in Icelandic waters	8
Host mixtures for plant disease control: Benefits from pathogen selection and immune priming	8
Weak Local Adaptation to Climate in Seedlings of a Deciduous Conifer Suggests Limited Benefits and Risks of Assisted Gene Flow	8
Comparison of Conservation Strategies for California Channel Island Oak (Quercus tomentella) Using Climate Suitability Predicted From Genomic Data	8
The tumour is in the detail: Local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils	8
Can cryptic female choice prevent invasive hybridization in external fertilizing fish?	8
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Going New Places: Successful Adaptation and Genomic Integrity of Grain Amaranth in India	8