Evolutionary Applications

Article	Citations
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Adaptation of Globodera pallida to Individual Components Compromises the Durability of Pyramided Resistance in Potato	42
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Reciprocal Host– Wolbachia Interactions Shape Infection Persistence Upon Loss of Cytoplasmic Incompatibility in Haplodiploids	37
Factors Beyond Karstification Have Shaped the Population Structure of a Surface‐Dwelling Minnow (Phoxinus lumaireul) Able to Disperse Underground	36
Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration	35
Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses	34
Resolving the Evolutionary History of Bighorn Sheep to Inform Future Management: An Answer to the California Bighorn Lineage Question	34
Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish	33
Genomic insights into local adaptation in the Asiatic toad Bufo gargarizans, and its genomic offset to climate warming	32
Reliability of trans‐generational genetic mark–recapture (tGMR) for enumerating Pacific salmon	32
Local Adaptation for Seasonal Cold Tolerance in a High‐Elevation Conifer Species, Subalpine Larch ( Larix lyallii Parl.)	30
Genetic Signatures of Contrasted Outbreak Histories of “Candidatus Liberibacter asiaticus”, the Bacterium That Causes Citrus Huanglongbing, in Three Outermost Regions of the European Union	29
Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	29
Genetic and Habitat Rescue Improve Population Viability in Self‐Incompatible Plants	29
Epigenetic Signatures of Ageing in Asian Elephants Revealed by Reduced Representation Bisulphite Sequencing	28
Genomic Evidence for the Purging of Deleterious Genetic Variation in the Endangered North Atlantic Right Whale	27
Minimising Risks of Reduced Genetic Diversity in Marine Restoration	27
Comparison of bacterial suppression by phage cocktails, dual‐receptor generalists, and coevolutionarily trained phages	27
Conspecific Scaffold‐Level Genome Assembly Outperforms Heterospecific Chromosome‐Level Assemblies for Assessing Genetic Indicators in a Threatened Marine Fish	27
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Evolutionary View of Liver Pathology	26

The effect of metal remediation on the virulence and antimicrobial resistance of the opportunistic pathogen Pseudomonas aeruginosa	25
Signatures of selection in Mulinia lateralis underpinning its rapid adaptation to laboratory conditions	25
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Dispersal and Gene Flow Among Potential Spawners: Source–Sink Structure Among Populations of Anadromous Brown Trout Exposed to Multifaceted Anthropogenic Impacts	24
Systematic Review on the Association Between Sleep and the Risk of Alzheimer’s Disease: An Evolutionary Perspective	24
Evidence of Fine‐Scale Genetic Structure in Tiger Sharks (Galeocerdo cuvier) Highlights the Importance of Stratified Sampling Regimes	23
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Low genetic diversity, local‐scale structure, and distinct genetic integrity of Korean chum salmon (Oncorhynchus keta) at the species range margin suggest a priority for conservation efforts	23
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Climatic oscillation promoted diversification of spinous assassin bugs during Pleistocene glaciation	23
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Transgenerational effects on body size and survival in Brook charr (Salvelinus fontinalis)	22
Lineage Differentiation and Genomic Vulnerability in a Relict Tree From Subtropical Forests	21
The influence of genetic architecture on responses to selection under drought in rice	21
Genotype–environment associations across spatial scales reveal the importance of putative adaptive genetic variation in divergence	21
Local environments, not invasive hybridization, influence cardiac performance of native trout under acute thermal stress	21
Competitive interactions affect introgression and population viability amidst maladaptive hybridization	20
From Individual to Stand Performance in Hybrids: Challenging the Optimal Parental Genetic Distance	19
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A Genome‐Wide Analysis of Structure and Evolution in Irish and British Populations of Bombus terrestris (L. 1758): Implications for Genetic Resource Conservation	19
Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River	19
Conservation and the genomics of populations, 3rd edition, Allendorf F. W., Funk W. C., Aitken S. N., Byrne M., Luikart G.	19
Genome of Kumamoto Oyster Crassostrea sikamea Provides Insights Into Bivalve Evolution and Environmental Adaptation	19
Contrasting effect of hybridization on genetic differentiation in three rockfish species with similar life history	18
Linking Measures of Inbreeding and Genetic Load to Demographic Histories Across Three Species of Bears	18
A cryptic syngameon withinBetulashrubs revealed: Implications for conservation in changing subarctic environments	18
More evolvable bacteriophages better suppress their host	18
Maintaining Local Adaptation Is Key for Evolutionary Rescue and Long‐Term Persistence of Populations Experiencing Habitat Loss and a Changing Environment	18
Population origin determines the adaptive potential for the advancement of flowering onset in Lupinus angustifolius L. (Fabaceae)	18
Independently evolved pollution resistance in four killifish populations is largely explained by few variants of large effect	18
The Influence of Spatial Distance and Environment on Small‐Scale Genetic Variability in Eelgrass and Its Application for Restoration	17
Comparative Transcriptomic Reveals Greater Similarities in Response to Temperature Than to Invasive Alien Predator in the Damselfly Ischnura elegans Across Different Geographic Scales	17
Range‐wide population genomics of the spongy moth, Lymantria dispar (Erebidae): Implications for biosurveillance, subspecies classification and phylogeography of a destructive moth	17
Biological control needs evolutionary perspectives of ecological interactions	17
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Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	17
Effective population size in a partially clonal plant is not predicted by the number of genetic individuals	17
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Assessing genotype–environment interactions in Atlantic salmon reared in freshwater loch and recirculating systems	16
Impact of putatively beneficial genomic loci on gene expression in little brown bats (Myotis lucifugus, Le Conte, 1831) affected by white‐nose syndrome	16
Comparing Genetic Ne Reconstructions Over Time With Long‐Time Wolf Monitoring Data in Two Populations	16
The effect of parental age on the quantity and quality of offspring in Syngnathus typhle, a species with male pregnancy	16
No Pedigree, No Problem: Genomic Inbreeding Tracks Genetic Rescue With High Resolution	16
Membrane Lipid Remodeling Strategies Regulate Fluidity for Acute Temperature Adaptation in Oysters	15
A cytochrome P450 insecticide detoxification mechanism is not conserved across the Megachilidae family of bees	15
Genetic Consequences of Tree Planting Versus Natural Colonisation: Implications for Afforestation Programmes in the United Kingdom	15
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Genomic prediction based on preselected single‐nucleotide polymorphisms from genome‐wide association study and imputed whole‐genome sequence data annotation for growth traits in Duroc pigs	15
Between the Cape Fold Mountains and the deep blue sea: Comparative phylogeography of selected codistributed ectotherms reveals asynchronous cladogenesis	15
Genomic Prediction for Growth‐Related Traits in Golden Pompano (Trachinotus ovatus)	15
Application of Genomic Offsets to Inform Freshwater Fisheries Management Under Climate Change	15
Genome‐wide SNPs of vegetable leafminer, Liriomyza sativae : Insights into the recent Australian invas	15
Population Patterns and Dynamics of Ilisha elongata (Clupeiformes: Pristigasteridae) Revealed by Target Enrichment Data	15
Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic	15
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Fine‐scale population structure of the northern hard clam (Mercenaria mercenaria) revealed by genome‐wide SNP markers	14
Genetic structure and first genome‐wide insights into the adaptation of a wild relative of grapevine, Vitis berlandieri	14
Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes	14
A Trade‐Off Between Antimicrobial Peptide Resistance and Sensitivity to Host Immune Effectors in Staphylococcus aureus In Vivo	14
Multiple Genetic Origins of Non‐Native, Self‐Sustaining Rainbow Trout Oncorhynchus mykiss in Strea	14
A decade of progress in marine evolutionary biology	14
Genomic Signatures of Climate‐Driven (Mal)Adaptation in an Iconic Conifer, the English Yew ( Taxus baccata L.)	14
Evolution of Ivermectin Resistance in the Nematode Model Caenorhabditis elegans : Critical Influen	14
Population Genomic Insights Into Recent Nutria ( Myocastor coypus ) Invasion Dynamics	14
Utility and challenges of using whole‐genome resequencing to detect emerging insect and mite resistance in agroecosystems	14
Ecology of Gene Drives: The Role of Density‐Dependent Feedbacks on the Efficacy and Dynamics of Two‐Locus Underdominance Gene Drive Systems	14
Genomics reveal the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range	13
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Genetic consequences of improved river connectivity in brown trout ( Salmo trutta L.)	13
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Genomic Analysis Reveals Inbreeding in an Island Population of Alexander Archipelago Wolves	12
Genetic Rescue: Latest Advances and Applications	12
Do Sex Ratio Distorting Microbes Inhibit the Evolution of Pesticide Resistance? An Experimental Test	12
Carry‐over effects and fitness trade‐offs in marine life histories: The costs of complexity for adaptation	12
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Genomic regions and candidate genes selected during the breeding of rice in Vietnam	12
Virulence Evolution: Thinking Outside of the Host	12
Time Constraints Modulate the Effects of Predator Cues and a Metal Across Life Stages in a Damselfly	12
Genetics in the Ocean's Twilight Zone: Population Structure of the Silvery Lightfish Across Its Distribution Range	12
Genomic and Physiological Basis of Structural and Foliar Trait Variation in Tropical Species Pterocarpus officinalis: Implications for Restoration in Future Drier Climates	12
Genetic evidence of a hybrid swarm between Alpine ibex (Capra ibex) and domestic goat (C. hircus)	11
Genomic vulnerability of a freshwater salmonid under climate change	11
Unveiling invisible farm‐to‐farmPRRSV‐2 transmission links and routes through transmission tree and network analysis	11
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A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae	11
A single generation in the wild increases fitness for descendants of hatchery‐origin Chinook salmon (Oncorhynchus tshawytscha)	11
Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle	11
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Genetic rescue from protected areas is modulated by migration, hunting rate, and timing of harvest	11
Heritable Genetic Effects Caused by a Single Generation of Captive Breeding	11
Leveraging the genetic diversity of trout in the rivers of the British Isles and northern France to understand the movements of sea trout ( Salmo trutta	11
Different mechanisms underpin the decline in growth of anchovies and sardines of the Bay of Biscay	11
Evolutionary Genomics Provides Insights Into Endangerment and Conservation of a Wild Apple Tree Species, Malus sieversii	11
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Genomic selection reveals hidden relatedness and increased breeding efficiency in western redcedar polycross breeding	11
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Endangered Pinto/Northern Abalone (Haliotis kamtschatkana) are Panmictic Across Their 3700 km Range Along the Pacific Coast of North America	10
Dogs of War: The Effect of War‐Inflicted Environmental Damage on Free‐Ranging Domestic Dogs	10
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Evolution in Response to Management Increases Invasiveness Among Experimental Populations of Duckweed (Lemna minor)	10
Adaptive Potential of Syzygium maire , a Critically Threatened Habitat Specialist Tree Species in Aotearoa New Zealand	10
Landscape Heterogeneity and Environmental Dynamics Improve Predictions of Establishment Success of Colonising Small Founding Populations	10
Effective Population Size Estimation in Large Marine Populations: Considering Current Challenges and Opportunities When Simulating Large Data Sets With High‐Density Genomic Information	10
Genome‐Wide Diversity in Lowland and Highland Maize Landraces From Southern South America: Population Genetics Insights to Assist Conservation	10
Meeting Report on the Symposium “Evolutionary Applications” at the 3rd Joint Congress on Evolutionary Biology	10
Integrated Salmon Hatcheries Can Pose Less Genetic Risk to Wild Populations Than Segregated Programs, Given Imperfect Implementation	10
Evolution of reproductive life‐history and dispersal traits during the range expansion of a biological control agent	10
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Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida scrub jays,Aphelocoma coerulescens	10
Unveiling Vertebrate Biodiversity in Arid and Semi‐Arid Terrestrial Ecosystems Through eDNA Metabarcoding at Savanna Waterholes	9
Planting long‐lived trees in a warming climate: Theory shows the importance of stage‐dependent climatic tolerance	9
Genomic Basis and Climate Change Vulnerability of Migration Timing in Atlantic Salmon ( Salmo salar )	9
Assessing the invasive potential of different source populations of ragweed (Ambrosia artemisiifoliaL.) through genomically informed species distribution modelling	9
Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree	9
Blood Relatives: Linking Evolutionary History and Conservation of Medicinal Leeches ( Hirudo spp.)	9
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	9
A diverse parasite pool can improve effectiveness of biological control constrained by genotype‐by‐genotype interactions	9
The cost of host genetic resistance on body condition: Evidence from divergently selected sheep	9
Correction to “Population Phylogenomics and Genetic Structure of the Polyphagous Leafminer, Liriomyza trifolii (Burgess) (Diptera: Agromyzidae)”	9
Evidence of hard‐selective sweeps suggests independent adaptation to insecticides in Colorado potato beetle (Coleoptera: Chrysomelidae) populations	9
Population demographic history and evolutionary rescue: Influence of a bottleneck event	9
A lack of genetic diversity and minimal adaptive evolutionary divergence in introduced Mysis shrimp after 50 years	9
The Chalk Streams of Southern England and Northern France Harbour Substantial Unique Components of the Overall Genetic Diversity of Atlantic Salmon (	9
A genomic region associated with iteroparous spawning phenology is linked with age‐at‐maturity in female steelhead trout	9
Limited Dispersal Drives Strong Genetic Structure in the Commercially Harvested Gastropod Buccinum undatum in the Western North Atlantic	9

Dealing With Assumptions and Sampling Bias in the Estimation of Effective Population Size: A Case Study in an Amphibian Population	9
Spatial and temporal patterns in the population genomics of the European cockchafer Melolontha melolontha in the Alpine region	9
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Multiple Stressors in the Anthropocene: Urban Evolutionary History Modifies Sensitivity to the Toxic Effects of Crude Oil Exposure in Killifish	9
Local Adaptation and Climate Change Vulnerability of the Relict Tree Species Taiwania cryptomerioides Provide Insights Into Its Conservation and Restoration	9
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The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution	9
Limited gains in native parasitoid performance on an invasive host beyond three generations of selection	8
Do biological control agents adapt to local pest genotypes? A multiyear test across geographic scales	8
Evidence of hybridization between genetically distinct Baltic cod stocks during peak population abundance(s)	8
Modeling of senescent cell dynamics predicts a late‐life decrease in cancer incidence	8
Going New Places: Successful Adaptation and Genomic Integrity of Grain Amaranth in India	8
Niche breadth and divergence in sympatric cryptic coral species (Pocillopora spp.) across habitats within reefs and among algal symbionts	8
Population genomics, life‐history tactics, and mixed‐stock subsistence fisheries in the northernmost American Atlantic salmon populations	8
Weak Local Adaptation to Climate in Seedlings of a Deciduous Conifer Suggests Limited Benefits and Risks of Assisted Gene Flow	8
The genetic legacy of the first successful reintroduction of a mammal to Britain: Founder events and attempted genetic rescue in Scotland's beaver population	8
Needle‐ and Canopy‐Level Genetic Variation in Scots Pine ( Pinus sylvestris L.) Revealed by Hyperspectral Phenotyping Across Sites and Seasons	8
The tumour is in the detail: Local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils	8
SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array	8
Ten years of demographic modelling of divergence and speciation in the sea	8
Balancing Inbreeding and Outbreeding Risks to Inform Translocations Throughout the Range of an Imperiled Darter	8
Can cryptic female choice prevent invasive hybridization in external fertilizing fish?	8
Fine‐Scale Variation in Soil Properties Promotes Local Taxonomic Diversity of Hybridizing Oak Species ( Quercus spp.)	8
Hidden but revealed: After years of genetic studies behavioural monitoring combined with genomics uncover new insight into the population dynamics of Atlantic cod in Icelandic waters	8
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When Do Tumours Develop? Neoplastic Processes Across Different Timescales: Age, Season and Round the Circadian Clock	8
Comparison of Conservation Strategies for California Channel Island Oak ( Quercus tomentella ) Using Climate Suitability Predicted From Genomic Data	8
RNA‐Seq‐based discovery of genetic variants and allele‐specific expression of two layer lines and broiler chicken	7
Identifying genes associated with genetic control of color polymorphism in the pearl oysterPinctada margaritiferavar.cumingii(Linnaeus 1758) using a comparative whole genome pool‐sequenc	7
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From the Americas to Southeast Asia: Navigating The Genomic Waves of Fall Armyworm (Spodoptera frugiperda) Invasions	7
Repeated evolution of herbicide resistance in Lolium multiflorum revealed by haplotype‐resolved analysis of acetyl‐CoA carboxylase	7
Species‐specific effects of production practices on genetic diversity in plant reintroduction programs	7
Deciphering the Genetic Landscape: Insights Into the Genomic Signatures of Changle Goose	7
Loss of plasticity in maturation timing after ten years of captive spawning in a delta smelt conservation hatchery	7
Do European Seabass Larvae Grow Better in Their Natural Temperature Regime?	7
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Integrating very high resolution environmental proxies in genotype–environment association studies	7
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Virulence evolution of Toxoplasma gondii within a multi‐host system	7
Latitude‐specific urbanization effects on life history traits in the damselfly Ischnura elegans	7
Whole‐genome re‐sequencing provides key genomic insights in farmed Arctic charr (Salvelinus alpinus) populations of anadromous and landlocked origin from Scandinavia	7
Effects of anthropogenic stress on hosts and their microbiomes: Treated wastewater alters performance and gut microbiome of a key detritivore (Asellus aquaticus)	7
Local adaptation through countergradient selection in northern populations of Skeletonema marinoi	7
Molecular epidemiology of the citrus bacterial pathogen Xanthomonas citri pv. citri from the Arabian Peninsula reveals a complex structure of specialist and generalist strains	7
A Practical Guide for Harnessing Phylogenomics in Biocontrol: Accounting for Topological Uncertainty and Phylogenetic Distance in the Centrifugal Phylogenetic Method and Beyond	7
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Assessing the Impacts of Adaptation to Native‐Range Habitats and Contemporary Founder Effects on Genetic Diversity in an Invasive Fish	7
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Ionizing radiation and melanism in Chornobyl tree frogs	7
Selection among critically endangered landlocked salmon (Salmo salar m. sebago) families in survival and growth traits across early life stages and in different environments	7
Using de novo transcriptomes to decipher the relationships in cutthroat trout subspecies (Oncorhynchus clarkii)	7
Kin selection theory and the design of cooperative crops	7
A Mosaic of Future Maladaptation Predicted for the Widespread Tree Nothofagus pumilio	7
Subspecies differentiation and range‐wide genetic structure are driven by climate in the California gnatcatcher, a flagship species for coastal sage scrub conservation	7
Advances in salmonid genetics—Insights from Coastwide and beyond	7
Country‐wide genetic monitoring over 21 years reveals lag in genetic recovery despite spatial connectivity in an expanding carnivore (Eurasian otter,Lutra lutra) population	7
Limited Migration From Physiological Refugia Constrains the Rescue of Native Gastropods Facing an Invasive Predator	7
The Evolutionary Biology of Female‐Biased Pain and Its Disorders	7
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Scientists' Warning on the Rapid Evolution of Parasites in the Anthropocene	7
Utility of parentage‐based tagging for monitoring Coho salmon (Oncorhynchus kisutch) in the interior Columbia River basin	7
Natural Born Detourers Modern Utility Dog Breeds Show Ancestry‐Based Superiority in Social Learning Capacity in a Detour Task	7
From STRs to SNPs via ddRAD ‐seq: Geographic as	6
Coral bleaching resistance variation is linked to differential mortality and skeletal growth during recovery	6
Dominance of African racial ancestry in honey bee colonies of Mexico 30 years after the migration of hybrids from South America	6
The Ne/N ratio in applied conservation	6
Exploring coral speciation: Multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef	6
Quantitative Synthesis of Microbe‐Driven Acclimation and Adaptation in Wild Vertebrates	6
Climate‐Associated Genetic Variation and Projected Genetic Offsets for Cryptomeria japonica D. Don Under Future Climate Scenarios	6
The Intertidal North‐South Split: Oceanographic Features and Life History Shape the Phylogeography of Chiton Acanthochitona rubrolineata	6
Investigating structural variant, indel and single nucleotide polymorphism differentiation between locally adapted Atlantic salmon populations	6
Comparative Transcriptomic Analyses Reveal Differences in the Responses of Diploid and Triploid Eastern Oysters to Environmental Stress	6
Host plants and insecticides shape the evolution of genetic and clonal diversity in a major aphid crop pest	6
Phenotypic and Genomic Signatures of Adaptation in Urban Populations of the Wild Radish Raphanus raphanistrum	6
Locus‐Specific Convergent Evolution and Interchromosomal Rearrangements Contribute to the Diversification of Amniote Type I Interferons	6
Panmixia in the American eel extends to its tropical range of distribution: Biological implications and policymaking challenges	6
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data	6
Genetic Rescue of the Dinaric Lynx Population: Insights for Conservation From Genetic Monitoring and Individual‐Based Modelling	6
Fisheries genomics of snapper ( Chrysophrys auratus ) along the west Australian coast	6
Ecological disturbance reduces genomic diversity across an Alpine whitefish adaptive radiation	6
An evolutionary look into the history of lentil reveals unexpected diversity	6
Urbanisation Drives Microevolution in the Egyptian Fruit Bat ( Rousettus aegyptiacus )	6
Uncovering the architecture of selection in two Bos taurus cattle breeds	6
Hierarchical Multi‐Dimensional Maturation Modeling to Isolate the Effects of Commercial Closure on a Great Lakes Fishery	6
Re‐Interpreting Genetic Offset: Quantifying the Least Required Evolutionary Rate Under Climate Change at the Mediterranean Range Margin of European Beech	6
Leveraging Knowledge of Traditional Italian Maize Landrace Diversity to Identify Signals of Local Adaptation	6
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Landscape Genomic Analyses of Quercus agrifolia Née Predict Patterns of Adaptedness to Future Climate and Provide Guidance for Conservation	6
Prospects, challenges and perspectives in harnessing natural selection to solve the ‘varroa problem’ of honey bees	6
Genome size variation and evolution during invasive range expansion in an introduced plant	6
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Evidence for Significant Skew and Low Heritability of Competitive Male Mating Success in the Yellow Fever Mosquito Aedes aegypti	6
Genomics and 20 years of sampling reveal phenotypic differences between subpopulations of outmigrating Central Valley Chinook salmon	6