Evolutionary Applications

Article	Citations
Supporting the adaptive capacity of species through more effective knowledge exchange with conservation practitioners	59
Issue Information	56
Cover Image	44
Issue Information	43
Issue Information	42
Genetic and Habitat Rescue Improve Population Viability in Self‐Incompatible Plants	42
Genomic and environmental influences on resilience in a cold‐water fish near the edge of its range	40
Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish	39
Identifying and testing marker–trait associations for growth and phenology in three pine species: Implications for genomic prediction	33
Genomic insights into local adaptation in the Asiatic toad Bufo gargarizans, and its genomic offset to climate warming	33
Genetic Signatures of Contrasted Outbreak Histories of “Candidatus Liberibacter asiaticus”, the Bacterium That Causes Citrus Huanglongbing, in Three Outermost Regions of the European Union	32
Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration	32
Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses	32
Genomic Evidence for the Purging of Deleterious Genetic Variation in the Endangered North Atlantic Right Whale	30
Reliability of trans‐generational genetic mark–recapture (tGMR) for enumerating Pacific salmon	29
Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species	29
Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	27
Low genetic diversity, local‐scale structure, and distinct genetic integrity of Korean chum salmon (Oncorhynchus keta) at the species range margin suggest a priority for conservation efforts	26
Issue Information	26
Comparison of bacterial suppression by phage cocktails, dual‐receptor generalists, and coevolutionarily trained phages	26
Population genomics of the basket cockle Clinocardium nuttallii in the southern Salish Sea: Assessing genetic risks of stock enhancement for a culturally important marine bivalve	25
The effect of metal remediation on the virulence and antimicrobial resistance of the opportunistic pathogen Pseudomonas aeruginosa	25
	25
Climatic oscillation promoted diversification of spinous assassin bugs during Pleistocene glaciation	24
Signatures of selection in Mulinia lateralis underpinning its rapid adaptation to laboratory conditions	24

A genomic‐based vision on the genetic diversity and key performance traits in selectively bred Arctic charr (Salvelinus alpinus)	24
Rich resource environment of fish farms facilitates phenotypic variation and virulence in an opportunistic fish pathogen	24
Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle	24
Corrigendum	24
Divergence in heritable life history traits suggests potential for local adaptation and trade‐offs associated with a coal ash disposal site	24
Evolutionary View of Liver Pathology	24
Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish	23
Cancer suppression and the evolution of multiple retrogene copies of TP53 in elephants: A re‐evaluation	23
The influence of genetic architecture on responses to selection under drought in rice	22
Conservation and the genomics of populations, 3rd edition, Allendorf F. W., Funk W. C., Aitken S. N., Byrne M., Luikart G.	22
Issue Information	22
Maintaining Local Adaptation Is Key for Evolutionary Rescue and Long‐Term Persistence of Populations Experiencing Habitat Loss and a Changing Environment	21
Lineage Differentiation and Genomic Vulnerability in a Relict Tree From Subtropical Forests	21
A cryptic syngameon withinBetulashrubs revealed: Implications for conservation in changing subarctic environments	21
Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control	20
Population origin determines the adaptive potential for the advancement of flowering onset in Lupinus angustifolius L. (Fabaceae)	20
Transgenerational effects on body size and survival in Brook charr (Salvelinus fontinalis)	20
Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River	20
Cover Image	19
More evolvable bacteriophages better suppress their host	19
Competitive interactions affect introgression and population viability amidst maladaptive hybridization	19
Local environments, not invasive hybridization, influence cardiac performance of native trout under acute thermal stress	19
Early queen joining and long‐term queen associations in polygyne colonies of an invasive wasp revealed by longitudinal genetic analysis	19
Issue Information	19
Independently evolved pollution resistance in four killifish populations is largely explained by few variants of large effect	19
Issue Information	19
Contrasting effect of hybridization on genetic differentiation in three rockfish species with similar life history	19
Issue Information	18
Genotype–environment associations across spatial scales reveal the importance of putative adaptive genetic variation in divergence	18
	18
Genome of Kumamoto Oyster Crassostrea sikamea Provides Insights Into Bivalve Evolution and Environmental Adaptation	18
Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	18
Issue Information	18
An evolutionary perspective on increasing net benefits to crops from symbiotic microbes	18
Genomic prediction based on preselected single‐nucleotide polymorphisms from genome‐wide association study and imputed whole‐genome sequence data annotation for growth traits in Duroc pigs	17
Issue Information	17
Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic	17
The effect of parental age on the quantity and quality of offspring in Syngnathus typhle, a species with male pregnancy	17
Comparing Genetic Ne Reconstructions Over Time With Long‐Time Wolf Monitoring Data in Two Populations	17
Range‐wide population genomics of the spongy moth, Lymantria dispar (Erebidae): Implications for biosurveillance, subspecies classification and phylogeography of a destructive moth	17
Comparative Transcriptomic Reveals Greater Similarities in Response to Temperature Than to Invasive Alien Predator in the Damselfly Ischnura elegans Across Different Geographic Scales	16
Breeding for adaptation to climate change: genomic selection for drought response in a white spruce multi‐site polycross test	16
Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression	16
Impact of putatively beneficial genomic loci on gene expression in little brown bats (Myotis lucifugus, Le Conte, 1831) affected by white‐nose syndrome	16
Effective population size in a partially clonal plant is not predicted by the number of genetic individuals	16
	15
Between the Cape Fold Mountains and the deep blue sea: Comparative phylogeography of selected codistributed ectotherms reveals asynchronous cladogenesis	15
The different fates of two Asian horseshoe crab species with different dispersal abilities	15
Planned missing data designs and methods: Options for strengthening inference, increasing research efficiency and improving animal welfare in ecological and evolutionary research	15
Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes	15

A cytochrome P450 insecticide detoxification mechanism is not conserved across the Megachilidae family of bees	15
Genome‐wide SNPs of vegetable leafminer, Liriomyza sativae: Insights into the recent Australian invasion	15
Utility and challenges of using whole‐genome resequencing to detect emerging insect and mite resistance in agroecosystems	15
Genetic structure and first genome‐wide insights into the adaptation of a wild relative of grapevine, Vitis berlandieri	15
Temporal and region‐specific variations in genome‐wide inbreeding effects on female size and reproduction traits of rainbow trout	15
Biological control needs evolutionary perspectives of ecological interactions	15
Assessing genotype–environment interactions in Atlantic salmon reared in freshwater loch and recirculating systems	15
Population genomics and phylogeography of the boll weevil,Anthonomus grandisBoheman (Coleoptera: Curculionidae), in the United States, northern Mexico, and Argentina	15
A decade of progress in marine evolutionary biology	15
	15
Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle	14
Fine‐scale population structure of the northern hard clam (Mercenaria mercenaria) revealed by genome‐wide SNP markers	14
Ecology of Gene Drives: The Role of Density‐Dependent Feedbacks on the Efficacy and Dynamics of Two‐Locus Underdominance Gene Drive Systems	14
Leveraging the genetic diversity of trout in the rivers of the British Isles and northern France to understand the movements of sea trout (Salmo trutta L.) around the English Channel	14
A Trade‐Off Between Antimicrobial Peptide Resistance and Sensitivity to Host Immune Effectors in Staphylococcus aureus In Vivo	14
Charting a course for genetic diversity in the UN Decade of Ocean Science	14
Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)	14
Consistent variations in personality traits and their potential for genetic improvement in biocontrol agents: Trichogramma evanescens as a case study	14
	13
	13
Genomics reveal the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range	13
Cover Image	13
Evolutionary Genomics Provides Insights Into Endangerment and Conservation of a Wild Apple Tree Species, Malus sieversii	13
The evolution of barriers to exploitation: Sometimes the Red Queen can take a break	13
Domestication‐induced reduction in eye size revealed in multiple common garden experiments: The case of Atlantic salmon (Salmo salar L.)	13
	13
Genetic consequences of improved river connectivity in brown trout (Salmo trutta L.)	13
Genomic regions and candidate genes selected during the breeding of rice in Vietnam	12
Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine	12
A single generation in the wild increases fitness for descendants of hatchery‐origin Chinook salmon (Oncorhynchus tshawytscha)	12
Genomic selection reveals hidden relatedness and increased breeding efficiency in western redcedar polycross breeding	12
Genomic vulnerability of a freshwater salmonid under climate change	12
A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae	12
Genetic evidence of a hybrid swarm between Alpine ibex (Capra ibex) and domestic goat (C. hircus)	12
Do Sex Ratio Distorting Microbes Inhibit the Evolution of Pesticide Resistance? An Experimental Test	12
Unveiling invisible farm‐to‐farmPRRSV‐2 transmission links and routes through transmission tree and network analysis	12
Genomic and Physiological Basis of Structural and Foliar Trait Variation in Tropical Species Pterocarpus officinalis: Implications for Restoration in Future Drier Climates	11
Population dynamics linked to glacial cycles inCercis chunianaF. P. Metcalf (Fabaceae) endemic to the montane regions of subtropical China	11
Carry‐over effects and fitness trade‐offs in marine life histories: The costs of complexity for adaptation	11
SNP analyses and acoustic tagging reveal multiple origins and widespread dispersal of invasive brown trout in the Falkland Islands	11
Cover Image	11
Genetic rescue from protected areas is modulated by migration, hunting rate, and timing of harvest	11
Phylogenetic diversity and conservation of crop wild relatives in Colombia	11
	11
Cover Image	11
Different mechanisms underpin the decline in growth of anchovies and sardines of the Bay of Biscay	11
	11
Cover Image	11
Meta‐analysis: Congruence of genomic and phenotypic differentiation across diverse natural study systems	11
Meeting Report on the Symposium “Evolutionary Applications” at the 3rd Joint Congress on Evolutionary Biology	11
Cover Image	10
Spatial and temporal patterns in the population genomics of the European cockchafer Melolontha melolontha in the Alpine region	10
Population genetic structure of the carrot weevil (Listronotus oregonensis) in North America	10
Genome‐Wide Diversity in Lowland and Highland Maize Landraces From Southern South America: Population Genetics Insights to Assist Conservation	10
Issue Information	10
A potential role for restricted intertactical heritability in preventing intralocus conflict	10
Evolution in Response to Management Increases Invasiveness Among Experimental Populations of Duckweed (Lemna minor)	10
Issue Information	10
Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest	10
	10
Endangered Pinto/Northern Abalone (Haliotis kamtschatkana) are Panmictic Across Their 3700 km Range Along the Pacific Coast of North America	10
Landscape Heterogeneity and Environmental Dynamics Improve Predictions of Establishment Success of Colonising Small Founding Populations	10
Species–landscape interactions drive divergent population trajectories in four forest‐dependent Afromontane forest songbird species within a biodiversity hotspot in South Africa	10
Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida scrub jays,Aphelocoma coerulescens	10
Evolution of reproductive life‐history and dispersal traits during the range expansion of a biological control agent	10
Evidence of hard‐selective sweeps suggests independent adaptation to insecticides in Colorado potato beetle (Coleoptera: Chrysomelidae) populations	10
	10
Differential expression analyses reveal extensive transcriptional plasticity induced by temperature in New Zealand silver trevally (Pseudocaranx georgianus)	10
Artificial selection for nonreproductive host killing in a native parasitoid on the invasive pest, Drosophila suzukii	10
Planting long‐lived trees in a warming climate: Theory shows the importance of stage‐dependent climatic tolerance	9
Assessing the invasive potential of different source populations of ragweed (Ambrosia artemisiifoliaL.) through genomically informed species distribution modelling	9
Dealing With Assumptions and Sampling Bias in the Estimation of Effective Population Size: A Case Study in an Amphibian Population	9
Gene flow between island populations of the malaria mosquito, Anopheles hinesorum, may have contributed to the spread of divergent host preference phenotypes	9
Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree	9
Population demographic history and evolutionary rescue: Influence of a bottleneck event	9
Issue Information	9
Selection of sites for field trials of genetically engineered mosquitoes with gene drive	9
	9
	9
A genomic region associated with iteroparous spawning phenology is linked with age‐at‐maturity in female steelhead trout	9

Bottleneck‐associated changes in the genomic landscape of genetic diversity in wild lynx populations	9
A diverse parasite pool can improve effectiveness of biological control constrained by genotype‐by‐genotype interactions	9
When Do Tumours Develop? Neoplastic Processes Across Different Timescales: Age, Season and Round the Circadian Clock	9
The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution	9
	9
Issue Information	9
Niche breadth and divergence in sympatric cryptic coral species (Pocillopora spp.) across habitats within reefs and among algal symbionts	9
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	9
Genome‐wide analysis of natural and restored eastern oyster populations reveals local adaptation and positive impacts of planting frequency and broodstock number	9
The cost of host genetic resistance on body condition: Evidence from divergently selected sheep	9
Can cryptic female choice prevent invasive hybridization in external fertilizing fish?	8
The tumour is in the detail: Local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils	8
Comparison of Conservation Strategies for California Channel Island Oak (Quercus tomentella) Using Climate Suitability Predicted From Genomic Data	8
Weak Local Adaptation to Climate in Seedlings of a Deciduous Conifer Suggests Limited Benefits and Risks of Assisted Gene Flow	8
Limited gains in native parasitoid performance on an invasive host beyond three generations of selection	8
Host mixtures for plant disease control: Benefits from pathogen selection and immune priming	8
Evidence of hybridization between genetically distinct Baltic cod stocks during peak population abundance(s)	8
A lack of genetic diversity and minimal adaptive evolutionary divergence in introduced Mysis shrimp after 50 years	8
Cover Image	8
Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models	8
Evolutionary mechanisms underpinning fitness response to multiple stressors in Daphnia	8
Balancing Inbreeding and Outbreeding Risks to Inform Translocations Throughout the Range of an Imperiled Darter	8
Fine‐Scale Variation in Soil Properties Promotes Local Taxonomic Diversity of Hybridizing Oak Species (Quercus spp.)	8
Modeling of senescent cell dynamics predicts a late‐life decrease in cancer incidence	8
Do biological control agents adapt to local pest genotypes? A multiyear test across geographic scales	8
SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array	8
The genetic legacy of the first successful reintroduction of a mammal to Britain: Founder events and attempted genetic rescue in Scotland's beaver population	8
Utility of parentage‐based tagging for monitoring Coho salmon (Oncorhynchus kisutch) in the interior Columbia River basin	7
Molecular epidemiology of the citrus bacterial pathogen Xanthomonas citri pv. citri from the Arabian Peninsula reveals a complex structure of specialist and generalist strains	7
Advances in salmonid genetics—Insights from Coastwide and beyond	7
Cover Image	7
Do European Seabass Larvae Grow Better in Their Natural Temperature Regime?	7
Ionizing radiation and melanism in Chornobyl tree frogs	7
Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration	7
	7
Ten years of demographic modelling of divergence and speciation in the sea	7
	7
Selection among critically endangered landlocked salmon (Salmo salar m. sebago) families in survival and growth traits across early life stages and in different environments	7
Population genomics, life‐history tactics, and mixed‐stock subsistence fisheries in the northernmost American Atlantic salmon populations	7
Limited Migration From Physiological Refugia Constrains the Rescue of Native Gastropods Facing an Invasive Predator	7
Using de novo transcriptomes to decipher the relationships in cutthroat trout subspecies (Oncorhynchus clarkii)	7
Local adaptation through countergradient selection in northern populations of Skeletonema marinoi	7
Hidden but revealed: After years of genetic studies behavioural monitoring combined with genomics uncover new insight into the population dynamics of Atlantic cod in Icelandic waters	7
Issue Information	7
Cover Image	7
Loss of plasticity in maturation timing after ten years of captive spawning in a delta smelt conservation hatchery	7
Assessing the Impacts of Adaptation to Native‐Range Habitats and Contemporary Founder Effects on Genetic Diversity in an Invasive Fish	7
Species‐specific effects of production practices on genetic diversity in plant reintroduction programs	7
Prospects, challenges and perspectives in harnessing natural selection to solve the ‘varroa problem’ of honey bees	6
An evolutionary look into the history of lentil reveals unexpected diversity	6
Corrigendum	6
The Ne/N ratio in applied conservation	6
Fisheries genomics of snapper (Chrysophrys auratus) along the west Australian coast	6
Genomic and common garden approaches yield complementary results for quantifying environmental drivers of local adaptation in rubber rabbitbrush, a foundational Great Basin shrub	6
Virulence evolution of Toxoplasma gondii within a multi‐host system	6
Issue Information	6
Quantitative Synthesis of Microbe‐Driven Acclimation and Adaptation in Wild Vertebrates	6
Genetic Rescue of the Dinaric Lynx Population: Insights for Conservation From Genetic Monitoring and Individual‐Based Modelling	6
Effects of anthropogenic stress on hosts and their microbiomes: Treated wastewater alters performance and gut microbiome of a key detritivore (Asellus aquaticus)	6
Exploring coral speciation: Multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef	6
Repeated evolution of herbicide resistance in Lolium multiflorum revealed by haplotype‐resolved analysis of acetyl‐CoA carboxylase	6
Deciphering the Genetic Landscape: Insights Into the Genomic Signatures of Changle Goose	6
RNA‐Seq‐based discovery of genetic variants and allele‐specific expression of two layer lines and broiler chicken	6
Reduced genetic diversity of freshwater amphipods in rivers with increased levels of anthropogenic organic micropollutants	6
Country‐wide genetic monitoring over 21 years reveals lag in genetic recovery despite spatial connectivity in an expanding carnivore (Eurasian otter,Lutra lutra) population	6
Genome size variation and evolution during invasive range expansion in an introduced plant	6
Climate‐Associated Genetic Variation and Projected Genetic Offsets for Cryptomeria japonica D. Don Under Future Climate Scenarios	6
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data	6
Whole‐genome re‐sequencing provides key genomic insights in farmed Arctic charr (Salvelinus alpinus) populations of anadromous and landlocked origin from Scandinavia	6
Latitude‐specific urbanization effects on life history traits in the damselfly Ischnura elegans	6
	6
Cover Image	6
Kin selection theory and the design of cooperative crops	6
Subspecies differentiation and range‐wide genetic structure are driven by climate in the California gnatcatcher, a flagship species for coastal sage scrub conservation	6
Integrating very high resolution environmental proxies in genotype–environment association studies	6
Identifying genes associated with genetic control of color polymorphism in the pearl oysterPinctada margaritiferavar.cumingii(Linnaeus 1758) using a comparative whole genome pool‐sequenc	6
Coral bleaching resistance variation is linked to differential mortality and skeletal growth during recovery	5
Escalating the conflict? Intersex genetic correlations influence adaptation to environmental change in facultatively migratory populations	5
Go west: Population genomics reveals unexpected population fluctuations and little gene flow in Western hemisphere populations of the predatory lady beetle, Hippodamia convergens	5
Conservation genomics assessment of Tharp's bluestar (Amsonia tharpii) with comparisons to widespread (A. longilora) and narrowly endemic (A. fugatei) congeners	5
Comparative Transcriptomic Analyses Reveal Differences in the Responses of Diploid and Triploid Eastern Oysters to Environmental Stress	5
Host plants and insecticides shape the evolution of genetic and clonal diversity in a major aphid crop pest	5
Natural CO2 seeps reveal adaptive potential to ocean acidification in fish	5
Dominance of African racial ancestry in honey bee colonies of Mexico 30 years after the migration of hybrids from South America	5
Are rabid raccoons (Procyon lotor) ready for the rapture? Determining the geographic origin of rabies virus‐infected raccoons using RADcapture and microhaplotypes	5
Whole‐genome analysis reveals the hybrid formation of Chinese indigenous DHB pig following human migration	5
From STRs to SNPs via ddRAD‐seq: Geographic assignment of confiscated tortoises at reduced costs	5
Hierarchical Multi‐Dimensional Maturation Modeling to Isolate the Effects of Commercial Closure on a Great Lakes Fishery	5
Remnant salmon life history diversity rediscovered in a highly compressed habitat	5
Testing for evolutionary change in restoration: A genomic comparison between ex situ, native, and commercial seed sources of Helianthus maximiliani	5
Uncovering the architecture of selection in two Bos taurus cattle breeds	5
	5
Erratum	5
Contrasting population genetic responses to migration barriers in two native and an invasive freshwater fish	5
Multiple introductions of divergent lineages and admixture conferred the high invasiveness in a widespread weed (Hypochaeris radicata)	5