Evolutionary Applications

Article	Citations
Genetic mixing for population management: From genetic rescue to provenancing	105
Prospects and limitations of genomic offset in conservation management	98
The genic view of hybridization in the Anthropocene	76
Genetic load has potential in large populations but is realized in small inbred populations	73
Phenotypic plasticity under rapid global changes: The intrinsic force for future seagrasses survival	67
Identifying key questions in the ecology and evolution of cancer	64
Why women have more autoimmune diseases than men: An evolutionary perspective	60
The evolutionary dynamics of biological invasions: A multi‐approach perspective	57
Seeing the forest for the trees: Assessing genetic offset predictions from gradient forest	52
Endometriosis and polycystic ovary syndrome are diametric disorders	48
Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data	37
Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)	37
Epigenomic modifications induced by hatchery rearing persist in germ line cells of adult salmon after their oceanic migration	35
Global phylogeography and invasion history of the spotted lanternfly revealed by mitochondrial phylogenomics	35
Design and analysis of CRISPR‐based underdominance toxin‐antidote gene drives	35
An epigenetic clock to estimate the age of living beluga whales	34
Insecticide exposure affects intergenerational patterns of DNA methylation in the Colorado potato beetle, Leptinotarsa decemlineata	34
Urbanization is associated with modifications in DNA methylation in a small passerine bird	34
An evaluation of the potential factors affecting lifetime reproductive success in salmonids	31
Towards evolutionary predictions: Current promises and challenges	31
Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies	29
First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (Oplegnathus fasciatus)	28
Population genomics and history of speciation reveal fishery management gaps in two related redfish species (Sebastes mentella and Sebastes fasciatus)	27
The genomic signal of local environmental adaptation in Aedes aegypti mosquitoes	26
Negative relationship between thermal tolerance and plasticity in tolerance emerges during experimental evolution in a widespread marine invertebrate	26

Urban evolution comes into its own: Emerging themes and future directions of a burgeoning field	24
Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression	24
Breeding for adaptation to climate change: genomic selection for drought response in a white spruce multi‐site polycross test	24
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	23
Effects of global warming on species with temperature‐dependent sex determination: Bridging the gap between empirical research and management	23
Gene drive strategies of pest control in agricultural systems: Challenges and opportunities	23
Genomic selection applications can improve the environmental performance of aquatics: A case study on the heat tolerance of abalone	22
Dispersal ability predicts spatial genetic structure in native mammals persisting across an urbanization gradient	22
Introgression of domesticated salmon changes life history and phenology of a wild salmon population	21
Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	21
Increasing temperature elevates the variation and spatial differentiation of pesticide tolerance in a plant pathogen	21
Epigenetics and the city: Non‐parallel DNA methylation modifications across pairs of urban‐forest Great tit populations	21
Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species	21
Evolutionary mechanisms underpinning fitness response to multiple stressors in Daphnia	21
A comparison of microsatellites and genome‐wide SNPs for the detection of admixture brings the first molecular evidence for hybridization between Mustela eversmanii and M. putorius (Must	21
Subspecies hybridization as a potential conservation tool in species reintroductions	20
The relevance of genetic structure in ecotype designation and conservation management	20
Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models	20
COVID‐19 disruption reveals mass‐tourism pressure on nearshore sea turtle distributions and access to optimal breeding habitat	20
Whole‐genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations	20
Mixed‐stock analysis using Rapture genotyping to evaluate stock‐specific exploitation of a walleye population despite weak genetic structure	20
Researching on the fine structure and admixture of the worldwide chicken population reveal connections between populations and important events in breeding history	20
Eight generations of native seed cultivation reduces plant fitness relative to the wild progenitor population	20
Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation	20
Ageing European lobsters (Homarus gammarus) using DNA methylation of evolutionarily conserved ribosomal DNA	20
Genetic consequences of long‐term small effective population size in the critically endangered pygmy hog	19
Demonstration of local adaptation in maize landraces by reciprocal transplantation	19
Evolution of manipulative microbial behaviors in the rhizosphere	19
Charting a course for genetic diversity in the UN Decade of Ocean Science	19
Genomic data support management of anadromous Arctic Char fisheries in Nunavik by highlighting neutral and putatively adaptive genetic variation	19
Spatial population genetics in heavily managed species: Separating patterns of historical translocation from contemporary gene flow in white‐tailed deer	19
Human‐modified canids in human‐modified landscapes: The evolutionary consequences of hybridization for grey wolves and free‐ranging domestic dogs	19
Up in the air: Threats to Afromontane biodiversity from climate change and habitat loss revealed by genetic monitoring of the Ethiopian Highlands bat	19
Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish	19
Symmetric response to competition in binary mixtures of cultivars associates with genetic gain in wheat yield	18
On the need for integrating cancer into the One Health perspective	18
Gut microbiomes of bigheaded carps and hybrids provide insights into invasion: A hologenome perspective	18
Sex‐ and time‐specific parental effects of warming on reproduction and offspring quality in a coral reef fish	18
Population genomics of invasive rodents on islands: Genetic consequences of colonization and prospects for localized synthetic gene drive	18
A genomic amplification affecting a carboxylesterase gene cluster confers organophosphate resistance in the mosquito Aedes aegypti: From genomic characterization to high‐throughput field detect	18
Shift in beneficial interactions during crop evolution	17
Rapid adaptation through genomic and epigenomic responses following translocations in an endangered salmonid	17
Conserving the genetic diversity of condemned populations: Optimizing collections and translocation	17
Genomic signatures of artificial selection in the Pacific oyster, Crassostrea gigas	17
Cross‐species transmission of retroviruses among domestic and wild felids in human‐occupied landscapes in Chile	17
The ghosts of propagation past: haplotype information clarifies the relative influence of stocking history and phylogeographic processes on contemporary population structure of walleye (Sander vitr	16
Marine food web perspective to fisheries‐induced evolution	16
Climate‐induced range shifts shaped the present and threaten the future genetic variability of a marine brown alga in the Northwest Pacific	16
Natural CO2 seeps reveal adaptive potential to ocean acidification in fish	16
Multiple‐batch spawning as a bet‐hedging strategy in highly stochastic environments: An exploratory analysis of Atlantic cod	16

Overcoming the growth–infectivity trade‐off in a bacteriophage slows bacterial resistance evolution	16
Artificial selection for nonreproductive host killing in a native parasitoid on the invasive pest, Drosophila suzukii	16
Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine	16
Whole‐genome resequencing reveals signature of local adaptation and divergence in wild soybean	16
Barriers and corridors of gene flow in an urbanized tropical reef system	16
Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle	15
Genomic survey of edible cockle (Cerastoderma edule) in the Northeast Atlantic: A baseline for sustainable management of its wild resources	15
Selection of sites for field trials of genetically engineered mosquitoes with gene drive	15
Supporting the adaptive capacity of species through more effective knowledge exchange with conservation practitioners	15
Transcriptional flexibility during thermal challenge corresponds with expanded thermal tolerance in an invasive compared to native fish	15
Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest	15
Commercial implementation of genomic selection in Tasmanian Atlantic salmon: Scheme evolution and validation	15
Reduced relative fitness in hatchery‐origin Pink Salmon in two streams in Prince William Sound, Alaska	15
Ten years of demographic modelling of divergence and speciation in the sea	15
Population genomics and phylogeography of the boll weevil,Anthonomus grandisBoheman (Coleoptera: Curculionidae), in the United States, northern Mexico, and Argentina	15
Identifying and addressing methodological incongruence in phylogenomics: A review	15
Ionizing radiation and melanism in Chornobyl tree frogs	15
Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish	15
Introduced populations of ragweed show as much evolutionary potential as native populations	14
Rapid evolution of knockdown resistance haplotypes in response to pyrethroid selection in Aedes aegypti	14
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture	14
Cancer suppression and the evolution of multiple retrogene copies of TP53 in elephants: A re‐evaluation	14
An epigenetic DNA methylation clock for age estimates in Indo‐Pacific bottlenose dolphins (Tursiops aduncus)	14
Biological control needs evolutionary perspectives of ecological interactions	14
Selection against individuals from genetic introgression of escaped farmed salmon in a natural population of Atlantic salmon	14
Chromosome‐level reference genome for European flat oyster (Ostrea edulis L.)	14
Genomics applied to livestock and aquaculture breeding	14
Incipient resistance to an effective pesticide results from genetic adaptation and the canalization of gene expression	14
Interplay between genetic, epigenetic, and gene expression variability: Considering complexity in evolvability	13
Male frequency in Caenorhabditis elegans increases in response to chronic irradiation	13
Diallelic self‐incompatibility is the main determinant of fertilization patterns in olive orchards	13
Long‐term urbanization impacts the eastern golden frog (Pelophylax plancyi) in Shanghai City: Demographic history, genetic structure, and implications for amphibian conservation in intensively	13
Differences by origin in methylome suggest eco‐phenotypes in the kelp Saccharina latissima	13
Urban rendezvous along the seashore: Ports as Darwinian field labs for studying marine evolution in the Anthropocene	13
Unusual evolution of tree frog populations in the Chernobyl exclusion zone	13
Using historical genome‐wide DNA to unravel the confused taxonomy in a songbird lineage that is extinct in the wild	13
Selection and introgression facilitated the adaptation of Chinese native endangered cattle in extreme environments	13
Genomic region associated with run timing has similar haplotypes and phenotypic effects across three lineages of Chinook salmon	13
Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	13
Genetic differentiation in pesticide resistance between urban and rural populations of a nontarget freshwater keystone interactor, Daphnia magna	13
Parentage‐based tagging combined with genetic stock identification is a cost‐effective and viable replacement for coded‐wire tagging in large‐scale assessments of marine Chinook salmon fisheries in Br	13
Selection on fish personality differs between a no‐take marine reserve and fished areas	12
Varying genetic imprints of road networks and human density in North American mammal populations	12
Importance of interindividual interactions in eco‐evolutionary population dynamics: The rise of demo‐genetic agent‐based models	12
Genome‐wide analysis reveals the genetic stock structure of hoki (Macruronus novaezelandiae)	12
The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex	12
Genomic and common garden approaches yield complementary results for quantifying environmental drivers of local adaptation in rubber rabbitbrush, a foundational Great Basin shrub	12
How much energetic trade‐offs limit selection? Insights from livestock and related laboratory model species	12
Do aphids in Dutch sweet pepper greenhouses carry heritable elements that protect them against biocontrol parasitoids?	12
The genome of the Pyrenean desman and the effects of bottlenecks and inbreeding on the genomic landscape of an endangered species	12
Host mixtures for plant disease control: Benefits from pathogen selection and immune priming	12
Collagen production and niche engineering: A novel strategy for cancer cells to survive acidosis in DCIS and evolve	12
Population genomics of free‐ranging Great Plains white‐tailed and mule deer reflects a long history of interspecific hybridization	11
Hybridization alters growth and migratory life‐history expression of native trout	11
Adaptive divergence and underlying mechanisms in response to salinity gradients between two Crassostrea oysters revealed by phenotypic and transcriptomic analyses	11
Intraspecific variation in landform engineering across a restored salt marsh shoreline	11
Assessing the levels of intraspecific admixture and interspecific hybridization in Iberian wild goats (Capra pyrenaica)	11
Comparative mitogenomics elucidates the population genetic structure of Amblyomma testudinarium in Japan and a closely related Amblyomma species in Myanmar	11
Invasive freshwater snails form novel microbial relationships	11
A new cheese population in Penicillium roqueforti and adaptation of the five populations to their ecological niche	11
Gene drive escape from resistance depends on mechanism and ecology	11
Genome‐wide analysis of hybridization in wild boar populations reveals adaptive introgression from domestic pig	11
The genomic basis and environmental correlates of local adaptation in the Atlantic horse mackerel (Trachurus trachurus)	11
Evaluating new species for aquaculture: A genomic dissection of growth in the New Zealand silver trevally (Pseudocaranx georgianus)	11
Extent and direction of introgressive hybridization of mule and white‐tailed deer in western Canada	10
Planned missing data designs and methods: Options for strengthening inference, increasing research efficiency and improving animal welfare in ecological and evolutionary research	10
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data	10
Effective specialist or jack of all trades? Experimental evolution of a crop pest in fluctuating and stable environments	10
Host evolutionary relationships explain tree mortality caused by a generalist pest–pathogen complex	10
Whole‐genome sequencing elucidates the species‐wide diversity and evolution of fungicide resistance in the early blight pathogen Alternaria solani	10
Weaving place‐based knowledge for culturally significant species in the age of genomics: Looking to the past to navigate the future	10
Are genetic variation and demographic performance linked?	10
Geographic variation in gene flow from a genetically distinct migratory ecotype drives population genetic structure of coastal Atlantic cod (Gadus morhua L.)	10
Genomic insights into the genotype–environment mismatch and conservation units of a Qinghai–Tibet Plateau endemic cypress under climate change	10
Country‐wide genetic monitoring over 21 years reveals lag in genetic recovery despite spatial connectivity in an expanding carnivore (Eurasian otter,Lutra lutra) population	10
The influence of genetic architecture on responses to selection under drought in rice	10
Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub‐Saharan African goats	10
Drivers of population differentiation in phenotypic plasticity in a temperate conifer: A 27‐year study	10
Fisheries genomics of snapper (Chrysophrys auratus) along the west Australian coast	10
Stepwise accumulation of mutations in CesA3 in Phytophthora sojae results in increasing resistance to CAA fungicides	10

Conservation insights from wild bee genetic studies: Geographic differences, susceptibility to inbreeding, and signs of local adaptation	10
Evaluating the suitability of close‐kin mark‐recapture as a demographic modelling tool for a critically endangered elasmobranch population	10
Genomic evidence of recent European introgression into North American farmed and wild Atlantic salmon	10
An epi‐evolutionary model for predicting the adaptation of spore‐producing pathogens to quantitative resistance in heterogeneous environments	9
Association between Chromosome 4 and mercury accumulation in muscle of the three‐spined stickleback (Gasterosteus aculeatus)	9
Insecticide resistance management strategies for public health control of mosquitoes exhibiting polygenic resistance: A comparison of sequences, rotations, and mixtures	9
Evaluating costs of heavy metal tolerance in a widely distributed, invasive butterfly	9
Genome‐wide analysis of natural and restored eastern oyster populations reveals local adaptation and positive impacts of planting frequency and broodstock number	9
Not that clean: Aquaculture‐mediated translocation of cleaner fish has led to hybridization on the northern edge of the species' range	9
Comparison of bacterial suppression by phage cocktails, dual‐receptor generalists, and coevolutionarily trained phages	9
Genomic vulnerability and socio‐economic threats under climate change in an African rainforest bird	9
Predicting evolution over multiple generations in deteriorating environments using evolutionarily explicit Integral Projection Models	9
Hybridization may aid evolutionary rescue of an endangered East African passerine	9
Fruit fly phylogeny imprints bacterial gut microbiota	9
Genome‐scale phylogeography resolves the native population structure of the Asian longhorned beetle, Anoplophora glabripennis (Motschulsky)	9
Mytilus trossulus introgression and consequences for shell traits in longline cultivated mussels	9
Long‐lasting effects of chronic exposure to chemical pollution on the hologenome of the Manila clam	9
Demographic history and conservation genomics of caribou (Rangifer tarandus) in Québec	9
Surveillance and control of SARS‐CoV‐2 in mustelids: An evolutionary perspective	9
Evolution of honey resistance in experimental populations of bacteria depends on the type of honey and has no major side effects for antibiotic susceptibility	9
Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control	8
Coral bleaching resistance variation is linked to differential mortality and skeletal growth during recovery	8
Genomic divergence and a lack of recent introgression between commercial and wild bumblebees (Bombus terrestris)	8
Demographic histories shape population genomics of the common coral grouper (Plectropomus leopardus)	8
Bactrocera dorsalis in the Indian Ocean: A tale of two invasions	8
Multiple evolutionary origins of glyphosate resistance in Lolium multiflorum	8
Multi‐population puma connectivity could restore genomic diversity to at‐risk coastal populations in California	8
An evolutionary look into the history of lentil reveals unexpected diversity	8
Low‐oxygen hormetic conditioning improves field performance of sterile insects by inducing beneficial plasticity	8
Between the Cape Fold Mountains and the deep blue sea: Comparative phylogeography of selected codistributed ectotherms reveals asynchronous cladogenesis	8
Response to selection for parasitism of a suboptimal, low‐preference host in an aphid parasitoid	8
Phenotypic and genotypic divergence of plant–herbivore interactions along an urbanization gradient	8
A machine learning approach to integrating genetic and ecological data in tsetse flies (Glossina pallidipes) for spatially explicit vector control planning	8
Density influences the heritability and genetic correlations of fish behaviour under trawling‐associated selection	8
Temporal and region‐specific variations in genome‐wide inbreeding effects on female size and reproduction traits of rainbow trout	8
Reduced genetic diversity of freshwater amphipods in rivers with increased levels of anthropogenic organic micropollutants	8
Characterizing the demographic history and prion protein variation to infer susceptibility to chronic wasting disease in a naïve population of white‐tailed deer (Odocoileus virginianus)	7
Modeling impact and cost‐effectiveness of driving‐Y gene drives for malaria elimination in the Democratic Republic of the Congo	7
Genetic diversity and structure of a recent fish invasion: Tench (Tinca tinca) in eastern North America	7
Invasion and rapid adaptation of guppies (Poecilia reticulata) across the Hawaiian Archipelago	7
Heterogeneity of a dwarf phenotype in Dutch traditional chicken breeds revealed by genomic analyses	7
Host plants and insecticides shape the evolution of genetic and clonal diversity in a major aphid crop pest	7
Balancing Breeding for Growth and Fecundity in Radiata Pine (Pinus radiataD. Don) Breeding Programme	7
Larval development in the Pacific oyster and the impacts of ocean acidification: Differential genetic effects in wild and domesticated stocks	7
An allozyme polymorphism is associated with a large chromosomal inversion in the marine snail Littorina fabalis	7
Consistent variations in personality traits and their potential for genetic improvement in biocontrol agents: Trichogramma evanescens as a case study	7
Kin selection theory and the design of cooperative crops	7
Local adaptation through countergradient selection in northern populations of Skeletonema marinoi	7
Bottleneck‐associated changes in the genomic landscape of genetic diversity in wild lynx populations	7
Phylogenetic diversity and conservation of crop wild relatives in Colombia	7
Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida scrub jays,Aphelocoma coerulescens	7
Genetic and morphological data demonstrate hybridization and backcrossing in a pair of salamanders at the far end of the speciation continuum	7
A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae	7
Brain transcriptome of gobies inhabiting natural CO2 seeps reveal acclimation strategies to long‐term acidification	7
First insights into the gut microbiomes and the diet of the Littorina snail ecotypes, a recently emerged marine evolutionary model	7
A genomic‐based vision on the genetic diversity and key performance traits in selectively bred Arctic charr (Salvelinus alpinus)	7
The paradox of cooperation among selfish cancer cells	7
Human‐induced evolution: Signatures, processes and mechanisms underneath anthropogenic footprints on natural systems	7
Shell color polymorphism in marine gastropods	7
Domestication‐induced reduction in eye size revealed in multiple common garden experiments: The case of Atlantic salmon (Salmo salar L.)	6
Genetic structure and first genome‐wide insights into the adaptation of a wild relative of grapevine, Vitis berlandieri	6
The different fates of two Asian horseshoe crab species with different dispersal abilities	6
Latitude‐specific urbanization effects on life history traits in the damselfly Ischnura elegans	6
Selection on individuals of introduced species starts before the actual introduction	6
The putative maintaining mechanism of gut bacterial ecosystem in giant pandas and its potential application in conservation	6
Chemical mutagenesis and thermal selection of coral photosymbionts induce adaptation to heat stress with trait trade‐offs	6
Proximity to crop relatives determines some patterns of natural selection in a wild sunflower	6
Evolution of reproductive life‐history and dispersal traits during the range expansion of a biological control agent	6
Population dynamics linked to glacial cycles inCercis chunianaF. P. Metcalf (Fabaceae) endemic to the montane regions of subtropical China	6
Evidence of stock connectivity, hybridization, and misidentification in white anglerfish supports the need of a genetics‐informed fisheries management framework	6
Horn growth appears to decline under intense trophy hunting, but biases in hunt data challenge the interpretation of the evolutionary basis of trends	6
Harvest is associated with the disruption of social and fine‐scale genetic structure among matrilines of a solitary large carnivore	6
Multifaceted framework for defining conservation units: An example from Atlantic salmon (Salmo salar) in Canada	6
Phenotypic plasticity in courtship exposed to selection in a human‐disturbed environment	6
A genome‐wide analysis suggests pleiotropic effects of Green Revolution genes on shade avoidance in wheat	6
Hidden but revealed: After years of genetic studies behavioural monitoring combined with genomics uncover new insight into the population dynamics of Atlantic cod in Icelandic waters	6
How to achieve a higher selection plateau in forest tree breeding? Fostering heterozygote × homozygote relationships in optimal contribution selection in the case study of Populus nigra	6
Assessing ex situ genetic and ecogeographic conservation in a threatened but widespread oak after range‐wide collecting effort	6
Comparison of behavioural tendencies between “dangerous dogs” and other domestic dog breeds – Evolutionary context and practical implications	6
Host association, environment, and geography underlie genomic differentiation in a major forest pest	6
Escalating the conflict? Intersex genetic correlations influence adaptation to environmental change in facultatively migratory populations	6
Effects of stocking at the parr stage on the reproductive fitness and genetic diversity of a wild population of Atlantic salmon (Salmo salar L.)	6
Interspecific hybrids show a reduced adaptive potential under DNA damaging conditions	6
Utility and challenges of using whole‐genome resequencing to detect emerging insect and mite resistance in agroecosystems	6
The genomic response to urbanization in the damselfly Ischnura elegans	6
Parasite management in aquaculture exerts selection on salmon louse behaviour	6
Co‐evolutionary adaptations of Acinetobacter baumannii and a clinical carbapenemase‐encoding plasmid during carbapenem exposure	6
Evolutionary stability, landscape heterogeneity, and human land‐usage shape population genetic connectivity in the Cape Floristic Region biodiversity hotspot	6
Whole‐genome sequencing reveals the artificial selection and local environmental adaptability of pigeons (Columba livia)	6
Mathematical modeling of genetic pest management through female‐specific lethality: Is one locus better than two?	6
Genetic differentiation following recent domestication events: A study of farmed Nile tilapia (Oreochromis niloticus) populations	6
Complex introgression among three diverged largemouth bass lineages	5
Whole‐genome analysis reveals the hybrid formation of Chinese indigenous DHB pig following human migration	5
Genomic and environmental influences on resilience in a cold‐water fish near the edge of its range	5
Leveraging genomics to understand threats to migratory birds	5