Evolutionary Applications

Article	Citations
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Factors Beyond Karstification Have Shaped the Population Structure of a Surface‐Dwelling Minnow (Phoxinus lumaireul) Able to Disperse Underground	40
Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses	40
Adaptation of Globodera pallida to Individual Components Compromises the Durability of Pyramided Resistance in Potato	40
Genomic insights into local adaptation in the Asiatic toad Bufo gargarizans, and its genomic offset to climate warming	38
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Reciprocal Host– Wolbachia Interactions Shape Infection Persistence Upon Loss of Cytoplasmic Incompatibility in Haplodiploids	37
Genetic and Habitat Rescue Improve Population Viability in Self‐Incompatible Plants	32
Identifying and testing marker–trait associations for growth and phenology in three pine species: Implications for genomic prediction	31
Reliability of trans‐generational genetic mark–recapture (tGMR) for enumerating Pacific salmon	30
Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish	30
Genomic Evidence for the Purging of Deleterious Genetic Variation in the Endangered North Atlantic Right Whale	29
Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef	28
Evolutionary View of Liver Pathology	28
Genetic Signatures of Contrasted Outbreak Histories of “Candidatus Liberibacter asiaticus”, the Bacterium That Causes Citrus Huanglongbing, in Three Outermost Regions of the European Union	28
Comparison of bacterial suppression by phage cocktails, dual‐receptor generalists, and coevolutionarily trained phages	28
Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration	28
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Signatures of selection in Mulinia lateralis underpinning its rapid adaptation to laboratory conditions	26
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Climatic oscillation promoted diversification of spinous assassin bugs during Pleistocene glaciation	26
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Dispersal and Gene Flow Among Potential Spawners: Source–Sink Structure Among Populations of Anadromous Brown Trout Exposed to Multifaceted Anthropogenic Impacts	26

Population genomics of the basket cockle Clinocardium nuttallii in the southern Salish Sea: Assessing genetic risks of stock enhancement for a culturally important marine bivalve	25
Rich resource environment of fish farms facilitates phenotypic variation and virulence in an opportunistic fish pathogen	25
Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle	25
The effect of metal remediation on the virulence and antimicrobial resistance of the opportunistic pathogen Pseudomonas aeruginosa	23
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Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish	23
Cancer suppression and the evolution of multiple retrogene copies of TP53 in elephants: A re‐evaluation	23
Low genetic diversity, local‐scale structure, and distinct genetic integrity of Korean chum salmon (Oncorhynchus keta) at the species range margin suggest a priority for conservation efforts	23
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Transgenerational effects on body size and survival in Brook charr (Salvelinus fontinalis)	22
Evidence of Fine‐Scale Genetic Structure in Tiger Sharks (Galeocerdo cuvier) Highlights the Importance of Stratified Sampling Regimes	22
Contrasting effect of hybridization on genetic differentiation in three rockfish species with similar life history	22
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Population origin determines the adaptive potential for the advancement of flowering onset in Lupinus angustifolius L. (Fabaceae)	22
An evolutionary perspective on increasing net benefits to crops from symbiotic microbes	22
Maintaining Local Adaptation Is Key for Evolutionary Rescue and Long‐Term Persistence of Populations Experiencing Habitat Loss and a Changing Environment	21
A Genome‐Wide Analysis of Structure and Evolution in Irish and British Populations of Bombus terrestris (L. 1758): Implications for Genetic Resource Conservation	21
Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River	20
Conservation and the genomics of populations, 3rd edition, Allendorf F. W., Funk W. C., Aitken S. N., Byrne M., Luikart G.	20
Genotype–environment associations across spatial scales reveal the importance of putative adaptive genetic variation in divergence	20
From Individual to Stand Performance in Hybrids: Challenging the Optimal Parental Genetic Distance	20
Lineage Differentiation and Genomic Vulnerability in a Relict Tree From Subtropical Forests	20
Competitive interactions affect introgression and population viability amidst maladaptive hybridization	19
Linking Measures of Inbreeding and Genetic Load to Demographic Histories Across Three Species of Bears	19
More evolvable bacteriophages better suppress their host	19
Independently evolved pollution resistance in four killifish populations is largely explained by few variants of large effect	19
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A cryptic syngameon withinBetulashrubs revealed: Implications for conservation in changing subarctic environments	18
Population and seascape genomics of a critically endangered benthic elasmobranch, the blue skate Dipturus batis	18
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Local environments, not invasive hybridization, influence cardiac performance of native trout under acute thermal stress	18
The influence of genetic architecture on responses to selection under drought in rice	18
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Genome of Kumamoto Oyster Crassostrea sikamea Provides Insights Into Bivalve Evolution and Environmental Adaptation	18
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Between the Cape Fold Mountains and the deep blue sea: Comparative phylogeography of selected codistributed ectotherms reveals asynchronous cladogenesis	17
Population Patterns and Dynamics of Ilisha elongata (Clupeiformes: Pristigasteridae) Revealed by Target Enrichment Data	17
Application of Genomic Offsets to Inform Freshwater Fisheries Management Under Climate Change	17
Genetic Consequences of Tree Planting Versus Natural Colonisation: Implications for Afforestation Programmes in the United Kingdom	16
Comparative Transcriptomic Reveals Greater Similarities in Response to Temperature Than to Invasive Alien Predator in the Damselfly Ischnura elegans Across Different Geographic Scales	16
Assessing genotype–environment interactions in Atlantic salmon reared in freshwater loch and recirculating systems	16
Range‐wide population genomics of the spongy moth, Lymantria dispar (Erebidae): Implications for biosurveillance, subspecies classification and phylogeography of a destructive moth	16
The effect of parental age on the quantity and quality of offspring in Syngnathus typhle, a species with male pregnancy	16
The Influence of Spatial Distance and Environment on Small‐Scale Genetic Variability in Eelgrass and Its Application for Restoration	16
Genome‐wide SNPs of vegetable leafminer, Liriomyza sativae : Insights into the recent Australian invas	16
Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic	16
Membrane Lipid Remodeling Strategies Regulate Fluidity for Acute Temperature Adaptation in Oysters	16
Genomic Prediction for Growth‐Related Traits in Golden Pompano (Trachinotus ovatus)	16

Impact of putatively beneficial genomic loci on gene expression in little brown bats (Myotis lucifugus, Le Conte, 1831) affected by white‐nose syndrome	15
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Population Genomic Insights Into Recent Nutria ( Myocastor coypus ) Invasion Dynamics	15
Genetic structure and first genome‐wide insights into the adaptation of a wild relative of grapevine, Vitis berlandieri	15
Effective population size in a partially clonal plant is not predicted by the number of genetic individuals	15
Biological control needs evolutionary perspectives of ecological interactions	15
Breeding for adaptation to climate change: genomic selection for drought response in a white spruce multi‐site polycross test	15
A decade of progress in marine evolutionary biology	15
A Trade‐Off Between Antimicrobial Peptide Resistance and Sensitivity to Host Immune Effectors in Staphylococcus aureus In Vivo	15
Ecology of Gene Drives: The Role of Density‐Dependent Feedbacks on the Efficacy and Dynamics of Two‐Locus Underdominance Gene Drive Systems	15
Genomic prediction based on preselected single‐nucleotide polymorphisms from genome‐wide association study and imputed whole‐genome sequence data annotation for growth traits in Duroc pigs	15
A cytochrome P450 insecticide detoxification mechanism is not conserved across the Megachilidae family of bees	15
Comparing Genetic Ne Reconstructions Over Time With Long‐Time Wolf Monitoring Data in Two Populations	15
Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes	15
Fine‐scale population structure of the northern hard clam (Mercenaria mercenaria) revealed by genome‐wide SNP markers	15
Utility and challenges of using whole‐genome resequencing to detect emerging insect and mite resistance in agroecosystems	14
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Genomic Signatures of Climate‐Driven (Mal)Adaptation in an Iconic Conifer, the English Yew ( Taxus baccata L.)	14
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Time Constraints Modulate the Effects of Predator Cues and a Metal Across Life Stages in a Damselfly	13
Do Sex Ratio Distorting Microbes Inhibit the Evolution of Pesticide Resistance? An Experimental Test	13
Genomic Analysis Reveals Inbreeding in an Island Population of Alexander Archipelago Wolves	13
A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae	13
Evolutionary Genomics Provides Insights Into Endangerment and Conservation of a Wild Apple Tree Species, Malus sieversii	13
Genomics reveal the origins and current structure of a genetically depauperate freshwater species in its introduced Alaskan range	13
A single generation in the wild increases fitness for descendants of hatchery‐origin Chinook salmon (Oncorhynchus tshawytscha)	13
Genomic and Physiological Basis of Structural and Foliar Trait Variation in Tropical Species Pterocarpus officinalis: Implications for Restoration in Future Drier Climates	13
Genomic regions and candidate genes selected during the breeding of rice in Vietnam	13
Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle	12
Leveraging the genetic diversity of trout in the rivers of the British Isles and northern France to understand the movements of sea trout ( Salmo trutta	12
Unveiling invisible farm‐to‐farmPRRSV‐2 transmission links and routes through transmission tree and network analysis	12
Genetic evidence of a hybrid swarm between Alpine ibex (Capra ibex) and domestic goat (C. hircus)	12
Consistent variations in personality traits and their potential for genetic improvement in biocontrol agents: Trichogramma evanescens as a case study	12
Genomic selection reveals hidden relatedness and increased breeding efficiency in western redcedar polycross breeding	12
Different mechanisms underpin the decline in growth of anchovies and sardines of the Bay of Biscay	11
Genetic consequences of improved river connectivity in brown trout ( Salmo trutta L.)	11
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Genetic rescue from protected areas is modulated by migration, hunting rate, and timing of harvest	11
Carry‐over effects and fitness trade‐offs in marine life histories: The costs of complexity for adaptation	11
Virulence Evolution: Thinking Outside of the Host	11
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Evolution of reproductive life‐history and dispersal traits during the range expansion of a biological control agent	11
Genomic vulnerability of a freshwater salmonid under climate change	11
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Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida scrub jays,Aphelocoma coerulescens	10
Landscape Heterogeneity and Environmental Dynamics Improve Predictions of Establishment Success of Colonising Small Founding Populations	10
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Integrated Salmon Hatcheries Can Pose Less Genetic Risk to Wild Populations Than Segregated Programs, Given Imperfect Implementation	10
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A genomic region associated with iteroparous spawning phenology is linked with age‐at‐maturity in female steelhead trout	10
Adaptive Potential of Syzygium maire , a Critically Threatened Habitat Specialist Tree Species in Aotearoa New Zealand	10
Endangered Pinto/Northern Abalone (Haliotis kamtschatkana) are Panmictic Across Their 3700 km Range Along the Pacific Coast of North America	10
Meeting Report on the Symposium “Evolutionary Applications” at the 3rd Joint Congress on Evolutionary Biology	10
Effective Population Size Estimation in Large Marine Populations: Considering Current Challenges and Opportunities When Simulating Large Data Sets With High‐Density Genomic Information	10
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Dealing With Assumptions and Sampling Bias in the Estimation of Effective Population Size: A Case Study in an Amphibian Population	10
Genome‐Wide Diversity in Lowland and Highland Maize Landraces From Southern South America: Population Genetics Insights to Assist Conservation	10
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Differential expression analyses reveal extensive transcriptional plasticity induced by temperature in New Zealand silver trevally (Pseudocaranx georgianus)	10
Evolution in Response to Management Increases Invasiveness Among Experimental Populations of Duckweed (Lemna minor)	10
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Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree	10
Dogs of War: The Effect of War‐Inflicted Environmental Damage on Free‐Ranging Domestic Dogs	10
Genomic Basis and Climate Change Vulnerability of Migration Timing in Atlantic Salmon ( Salmo salar )	9
Correction to “Population Phylogenomics and Genetic Structure of the Polyphagous Leafminer, Liriomyza trifolii (Burgess) (Diptera: Agromyzidae)”	9
Planting long‐lived trees in a warming climate: Theory shows the importance of stage‐dependent climatic tolerance	9
The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution	9
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SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array	9
Evidence of hard‐selective sweeps suggests independent adaptation to insecticides in Colorado potato beetle (Coleoptera: Chrysomelidae) populations	9
The cost of host genetic resistance on body condition: Evidence from divergently selected sheep	9
A diverse parasite pool can improve effectiveness of biological control constrained by genotype‐by‐genotype interactions	9
Population genetic structure of the carrot weevil (Listronotus oregonensis) in North America	9
Population demographic history and evolutionary rescue: Influence of a bottleneck event	9
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Ten years of demographic modelling of divergence and speciation in the sea	9
Spatial and temporal patterns in the population genomics of the European cockchafer Melolontha melolontha in the Alpine region	9
Multiple Stressors in the Anthropocene: Urban Evolutionary History Modifies Sensitivity to the Toxic Effects of Crude Oil Exposure in Killifish	9
Assessing the invasive potential of different source populations of ragweed (Ambrosia artemisiifoliaL.) through genomically informed species distribution modelling	9
Local Adaptation and Climate Change Vulnerability of the Relict Tree Species Taiwania cryptomerioides Provide Insights Into Its Conservation and Restoration	9
How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici	9
Limited gains in native parasitoid performance on an invasive host beyond three generations of selection	9
Comparison of Conservation Strategies for California Channel Island Oak ( Quercus tomentella ) Using Climate Suitability Predicted From Genomic Data	9
Assessing the Impacts of Adaptation to Native‐Range Habitats and Contemporary Founder Effects on Genetic Diversity in an Invasive Fish	8
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Can cryptic female choice prevent invasive hybridization in external fertilizing fish?	8
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The genetic legacy of the first successful reintroduction of a mammal to Britain: Founder events and attempted genetic rescue in Scotland's beaver population	8
Balancing Inbreeding and Outbreeding Risks to Inform Translocations Throughout the Range of an Imperiled Darter	8
Weak Local Adaptation to Climate in Seedlings of a Deciduous Conifer Suggests Limited Benefits and Risks of Assisted Gene Flow	8
When Do Tumours Develop? Neoplastic Processes Across Different Timescales: Age, Season and Round the Circadian Clock	8
Integrating very high resolution environmental proxies in genotype–environment association studies	8
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Fine‐Scale Variation in Soil Properties Promotes Local Taxonomic Diversity of Hybridizing Oak Species ( Quercus spp.)	8
Population genomics, life‐history tactics, and mixed‐stock subsistence fisheries in the northernmost American Atlantic salmon populations	8
Do biological control agents adapt to local pest genotypes? A multiyear test across geographic scales	8
Going New Places: Successful Adaptation and Genomic Integrity of Grain Amaranth in India	8
Evidence of hybridization between genetically distinct Baltic cod stocks during peak population abundance(s)	8
Limited Migration From Physiological Refugia Constrains the Rescue of Native Gastropods Facing an Invasive Predator	8
The tumour is in the detail: Local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils	8
Needle‐ and Canopy‐Level Genetic Variation in Scots Pine ( Pinus sylvestris L.) Revealed by Hyperspectral Phenotyping Across Sites and Seasons	8
Hidden but revealed: After years of genetic studies behavioural monitoring combined with genomics uncover new insight into the population dynamics of Atlantic cod in Icelandic waters	8
Niche breadth and divergence in sympatric cryptic coral species (Pocillopora spp.) across habitats within reefs and among algal symbionts	8
Host mixtures for plant disease control: Benefits from pathogen selection and immune priming	8
Modeling of senescent cell dynamics predicts a late‐life decrease in cancer incidence	8
A lack of genetic diversity and minimal adaptive evolutionary divergence in introduced Mysis shrimp after 50 years	8
Quantitative Synthesis of Microbe‐Driven Acclimation and Adaptation in Wild Vertebrates	7
Climate‐Associated Genetic Variation and Projected Genetic Offsets for Cryptomeria japonica D. Don Under Future Climate Scenarios	7
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Whole‐genome re‐sequencing provides key genomic insights in farmed Arctic charr (Salvelinus alpinus) populations of anadromous and landlocked origin from Scandinavia	7
Exploring coral speciation: Multiple sympatric Stylophora pistillata taxa along a divergence continuum on the Great Barrier Reef	7
RNA‐Seq‐based discovery of genetic variants and allele‐specific expression of two layer lines and broiler chicken	7
Country‐wide genetic monitoring over 21 years reveals lag in genetic recovery despite spatial connectivity in an expanding carnivore (Eurasian otter,Lutra lutra) population	7
Species‐specific effects of production practices on genetic diversity in plant reintroduction programs	7
Reduced genetic diversity of freshwater amphipods in rivers with increased levels of anthropogenic organic micropollutants	7
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Utility of parentage‐based tagging for monitoring Coho salmon (Oncorhynchus kisutch) in the interior Columbia River basin	7
The Ne/N ratio in applied conservation	7
Genome size variation and evolution during invasive range expansion in an introduced plant	7
Virulence evolution of Toxoplasma gondii within a multi‐host system	7
Repeated evolution of herbicide resistance in Lolium multiflorum revealed by haplotype‐resolved analysis of acetyl‐CoA carboxylase	7
Latitude‐specific urbanization effects on life history traits in the damselfly Ischnura elegans	7
Do European Seabass Larvae Grow Better in Their Natural Temperature Regime?	7
Loss of plasticity in maturation timing after ten years of captive spawning in a delta smelt conservation hatchery	7
Molecular epidemiology of the citrus bacterial pathogen Xanthomonas citri pv. citri from the Arabian Peninsula reveals a complex structure of specialist and generalist strains	7
From the Americas to Southeast Asia: Navigating The Genomic Waves of Fall Armyworm (Spodoptera frugiperda) Invasions	7
Using de novo transcriptomes to decipher the relationships in cutthroat trout subspecies (Oncorhynchus clarkii)	7
Deciphering the Genetic Landscape: Insights Into the Genomic Signatures of Changle Goose	7
Genetic Rescue of the Dinaric Lynx Population: Insights for Conservation From Genetic Monitoring and Individual‐Based Modelling	7
Effects of anthropogenic stress on hosts and their microbiomes: Treated wastewater alters performance and gut microbiome of a key detritivore (Asellus aquaticus)	7
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data	7
Subspecies differentiation and range‐wide genetic structure are driven by climate in the California gnatcatcher, a flagship species for coastal sage scrub conservation	7
Ionizing radiation and melanism in Chornobyl tree frogs	7
Local adaptation through countergradient selection in northern populations of Skeletonema marinoi	7
Selection among critically endangered landlocked salmon (Salmo salar m. sebago) families in survival and growth traits across early life stages and in different environments	7
Advances in salmonid genetics—Insights from Coastwide and beyond	7
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An evolutionary look into the history of lentil reveals unexpected diversity	6
Identifying genes associated with genetic control of color polymorphism in the pearl oysterPinctada margaritiferavar.cumingii(Linnaeus 1758) using a comparative whole genome pool‐sequenc	6
The Intertidal North‐South Split: Oceanographic Features and Life History Shape the Phylogeography of Chiton Acanthochitona rubrolineata	6
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Comparative Transcriptomic Analyses Reveal Differences in the Responses of Diploid and Triploid Eastern Oysters to Environmental Stress	6
Genetic and Environmental (Co)variation of Egg Size, Fecundity, and Growth Traits in Arctic Charr	6
Dominance of African racial ancestry in honey bee colonies of Mexico 30 years after the migration of hybrids from South America	6
Natural Born Detourers Modern Utility Dog Breeds Show Ancestry‐Based Superiority in Social Learning Capacity in a Detour Task	6
Kin selection theory and the design of cooperative crops	6
Escalating the conflict? Intersex genetic correlations influence adaptation to environmental change in facultatively migratory populations	6
Evidence for Significant Skew and Low Heritability of Competitive Male Mating Success in the Yellow Fever Mosquito Aedes aegypti	6
Multiple introductions of divergent lineages and admixture conferred the high invasiveness in a widespread weed (Hypochaeris radicata)	6
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Genetic differentiation following recent domestication events: A study of farmed Nile tilapia (Oreochromis niloticus) populations	6
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Ecological disturbance reduces genomic diversity across an Alpine whitefish adaptive radiation	6
Fisheries genomics of snapper ( Chrysophrys auratus ) along the west Australian coast	6
Panmixia in the American eel extends to its tropical range of distribution: Biological implications and policymaking challenges	6
Investigating structural variant, indel and single nucleotide polymorphism differentiation between locally adapted Atlantic salmon populations	6
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Coral bleaching resistance variation is linked to differential mortality and skeletal growth during recovery	6
Genomic divergence and a lack of recent introgression between commercial and wild bumblebees (Bombus terrestris)	6
Remnant salmon life history diversity rediscovered in a highly compressed habitat	6
Prospects, challenges and perspectives in harnessing natural selection to solve the ‘varroa problem’ of honey bees	6
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A major 6 Mb superlocus is involved in pyrethroid resistance in the common bed bug Cimex lectularius	5
Eco‐evolutionary factors that influence its demographic oscillations in Prochilodus costatus (Actinopterygii: Characiformes) populations evidenced through a genetic spatial–temporal evaluation	5
Demographic patterns of walleye (Sander vitreus) reproductive success in a Wisconsin population	5
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Can Thinning Foster Forest Genetic Adaptation to Drought? A Demo‐Genetic Modelling Approach With Disturbance Regimes	5
Complex patterns shape immune genes diversity during invasion of common raccoon in Europe – Selection in action despite genetic drift	5
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