Algorithms for Molecular Biology

Papers
(The TQCC of Algorithms for Molecular Biology is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)
ArticleCitations
Fast characterization of segmental duplication structure in multiple genome assemblies18
Binning long reads in metagenomics datasets using composition and coverage information15
Improving metagenomic binning results with overlapped bins using assembly graphs14
Fulgor: a fast and compact k-mer index for large-scale matching and color queries13
Fast lightweight accurate xenograft sorting12
Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution10
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis10
Disk compression of k-mer sets9
Parsimonious Clone Tree Integration in cancer8
A new 1.375-approximation algorithm for sorting by transpositions8
Heuristic shortest hyperpaths in cell signaling hypergraphs8
The Bourque distances for mutation trees of cancers8
Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions7
Treewidth-based algorithms for the small parsimony problem on networks6
Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors6
On weighted k-mer dictionaries6
Space-efficient representation of genomic k-mer count tables6
An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes6
Embedding gene trees into phylogenetic networks by conflict resolution algorithms5
A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming5
Heuristic algorithms for best match graph editing4
Natural family-free genomic distance4
Pangenomic genotyping with the marker array4
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package4
Tree diet: reducing the treewidth to unlock FPT algorithms in RNA bioinformatics4
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