Algorithms for Molecular Biology

Papers
(The TQCC of Algorithms for Molecular Biology is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-01-01 to 2025-01-01.)
ArticleCitations
Space-efficient representation of genomic k-mer count tables18
Pfp-fm: an accelerated FM-index15
Adding hydrogen atoms to molecular models via fragment superimposition14
Testing the agreement of trees with internal labels13
Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors12
Compression algorithm for colored de Bruijn graphs10
Locality-sensitive bucketing functions for the edit distance10
phyBWT2: phylogeny reconstruction via eBWT positional clustering9
Global exact optimisations for chloroplast structural haplotype scaffolding8
Fast lightweight accurate xenograft sorting8
Natural family-free genomic distance8
Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model8
Unifying duplication episode clustering and gene-species mapping inference7
A new 1.375-approximation algorithm for sorting by transpositions6
Weighted ASTRID: fast and accurate species trees from weighted internode distances6
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation6
Fast characterization of segmental duplication structure in multiple genome assemblies6
On a greedy approach for genome scaffolding6
A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming5
Exact transcript quantification over splice graphs5
Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution4
Median quartet tree search algorithms using optimal subtree prune and regraft4
Disk compression of k-mer sets4
Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem4
Pangenomic genotyping with the marker array4
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