Plant Methods

Papers
(The TQCC of Plant Methods is 8. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-01-01 to 2025-01-01.)
ArticleCitations
VA-TIRFM-based SM kymograph analysis for dwell time and colocalization of plasma membrane protein in plant cells496
Full-length transcriptome sequences by a combination of sequencing platforms applied to isoflavonoid and triterpenoid saponin biosynthesis of Astragalus mongholicus Bunge85
Protocol: a simple method for biosensor visualization of bacterial quorum sensing and quorum quenching interaction on Medicago roots79
Using a thermal gradient table to study plant temperature signalling and response across a temperature spectrum77
The influence of water content on the longitudinal modulus of elasticity of maize stalk pith and rind tissues59
Cryopreservation of sessile oak (Quercus petraea (Matt.) Liebl.) plumules using aluminium cryo-plates: influence of cryoprotection and drying57
A device for the controlled cooling and freezing of excised plant specimens during magnetic resonance imaging55
Characterizing reference genes for high-fidelity gene expression analysis under different abiotic stresses and elicitor treatments in fenugreek leaves54
A robust and efficient automatic method to segment maize FASGA stained stem cross section images to accurately quantify histological profile53
Detection of Cucumber green mottle mosaic virus in low-concentration virus-infected seeds by improved one-step pre-amplification RT-qPCR51
Orthogonal control of gene expression in plants using synthetic promoters and CRISPR-based transcription factors50
Optimizing speed breeding and seed/pod chip based genotyping techniques in pigeonpea: A way forward for high throughput line development48
Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two43
Stability investigation of air-dried olive ribo nucleic acids for metavirome studies42
Protocol: analytical methods for visualizing the indolic precursor network leading to auxin biosynthesis37
Profiling of 1-aminocyclopropane-1-carboxylic acid and selected phytohormones in Arabidopsis using liquid chromatography-tandem mass spectrometry37
Efficient transformation of the isolated microspores of Chinese cabbage (Brassica rapa L. ssp. pekinensis) by particle bombardment36
Semi-supervised few-shot learning approach for plant diseases recognition36
Electrical impedance spectroscopy (EIS) in plant roots research: a review36
Micro computed tomography analysis of barley during the first 24 hours of germination35
The semi-automated development of plant cell wall finite element models35
A novel selection model based on multivariate methods and arbitrary genetic parameters: a case study on tomato families35
A quantitative method to measure geranylgeranyl diphosphate (GGPP) and geranylgeranyl monophosphate (GGP) in tomato (Solanum lycopersicum) fruit34
Optimizing PGRs for in vitro shoot proliferation of pomegranate with bayesian-tuned ensemble stacking regression and NSGA-II: a comparative evaluation of machine learning models33
An automated method for stem diameter measurement based on laser module and deep learning32
Methods to optimize optical sensing of biotic plant stress – combined effects of hyperspectral imaging at night and spatial binning32
Rapid identification of mutations caused by fast neutron bombardment in Medicago truncatula32
Culture types and period impact gametophyte morphogenesis and sporophyte formation of eastern bracken31
Karst vegetation coverage detection using UAV multispectral vegetation indices and machine learning algorithm31
Improved estimation of aboveground biomass of regional coniferous forests integrating UAV-LiDAR strip data, Sentinel-1 and Sentinel-2 imageries30
Identifying and mapping individual medicinal plant Lamiophlomis rotata at high elevations by using unmanned aerial vehicles and deep learning30
AprGPD: the apricot genomic and phenotypic database29
Optimized synthesis of layered double hydroxide lactate nanosheets and their biological effects on Arabidopsis seedlings28
The isolation strategy and chemical analysis of oil cells from Asari Radix et Rhizoma27
High-throughput phenotyping allows the selection of soybean genotypes for earliness and high grain yield26
A novel visual marker to distinguish haploids from doubled haploids in rice (Oryza sativa, L) at early growth stages26
Characterizing the effects of different chemicals on stem bending of cut snapdragon flower26
TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images25
Orchid2024: A cultivar-level dataset and methodology for fine-grained classification of Chinese Cymbidium Orchids25
A systematic high-throughput phenotyping assay for sugarcane stalk quality characterization by near-infrared spectroscopy25
Improved genomic prediction using machine learning with Variational Bayesian sparsity24
Real-time monitoring of Ralstonia solanacearum infection progress in tomato and Arabidopsis using bioluminescence imaging technology23
Simultaneous determination of protoporphyrin IX and magnesium protoporphyrin IX in Arabidopsis thaliana and Camellia sinensis using UPLC-MS/MS23
Advanced screening methods for assessing motility and hatching in plant-parasitic nematodes23
One pattern analysis (OPA) for the quantitative determination of protein interactions in plant cells23
An efficient screening system of disease-resistant genes from wild apple, Malus sieversii in response to Valsa mali pathogenic fungus23
Combining Fourier-transform infrared spectroscopy and multivariate analysis for chemotyping of cell wall composition in Mungbean (Vigna radiata (L.) Wizcek)23
Simple and efficient isolation of plant genomic DNA using magnetic ionic liquids22
Soybean leaf estimation based on RGB images and machine learning methods22
Hyperspectral imaging-based classification of rice leaf blast severity over multiple growth stages22
De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.22
Application of machine learning algorithms and feature selection in rapeseed (Brassica napus L.) breeding for seed yield22
Efficient isolation and purification of tissue-specific protoplasts from tea plants (Camellia sinensis (L.) O. Kuntze)21
A novel method for extraction of high purity and high production Phytophthora sojae oospores21
Metric learning for image-based flower cultivars identification19
Improving the prediction performance of leaf water content by coupling multi-source data with machine learning in rice (Oryza sativa L.)19
Temporal resolution trumps spectral resolution in UAV-based monitoring of cereal senescence dynamics19
Non-destructive real-time monitoring of underground root development with distributed fiber optic sensing18
A handheld device for measuring the diameter at breast height of individual trees using laser ranging and deep-learning based image recognition18
Segmentation and counting of wheat spike grains based on deep learning and textural feature18
Determination of phosphorus compounds in plant tissues: from colourimetry to advanced instrumental analytical chemistry18
Systematic investigation and validation of peanut genetic transformation via the pollen tube injection method18
Versatile DNA extraction from diverse plant taxa using ionic liquids and magnetic ionic liquids: a methodological breakthrough for enhanced sample utility17
Corn360: a method for quantification of corn kernels17
In vivo characterisation of field pea stem wall thickness using optical coherence tomography17
Computer vision-based wood identification and its expansion and contribution potentials in wood science: A review17
A deep learning approach to track Arabidopsis seedlings’ circumnutation from time-lapse videos17
A method to experimentally clamp leaf water content to defined values to assess its effects on apoplastic pH17
A label-free, fast and high-specificity technique for plant cell wall imaging and composition analysis17
A CNN model for early detection of pepper Phytophthora blight using multispectral imaging, integrating spectral and textural information16
A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction16
Fast estimation of plant growth dynamics using deep neural networks16
Mix-and-match: an improved, fast and accessible protocol for hypocotyl micrografting of Arabidopsis seedlings with systemic ACC responses as a case study16
Roughness measurement of leaf surface based on shape from focus15
An efficient grafting method for phytoplasma transmission in Catharanthus roseus15
Early detection of verticillium wilt in eggplant leaves by fusing five image channels: a deep learning approach15
Estimation of cotton canopy parameters based on unmanned aerial vehicle (UAV) oblique photography15
Phenotyping seedlings for selection of root system architecture in alfalfa (Medicago sativa L.)15
A random-sampling approach to track cell divisions in time-lapse fluorescence microscopy15
Ripening dynamics revisited: an automated method to track the development of asynchronous berries on time-lapse images15
Qualitative and quantitative evaluation of thylakoid complexes separated by Blue Native PAGE15
Prediction accuracy and repeatability of UAV based biomass estimation in wheat variety trials as affected by variable type, modelling strategy and sampling location15
HairNet2: deep learning to quantify cotton leaf hairiness, a complex genetic and environmental trait15
Highly efficient Agrobacterium rhizogenes-mediated hairy root transformation for gene functional and gene editing analysis in soybean15
Complementarity of Raman and Infrared spectroscopy for rapid characterization of fucoidan extracts14
Applying spectral fractal dimension index to predict the SPAD value of rice leaves under bacterial blight disease stress14
Can allele-specific loop-mediated isothermal amplification be used for rapid detection of target-site herbicide resistance in Lolium spp.?14
Classification of multi-year and multi-variety pumpkin seeds using hyperspectral imaging technology and three-dimensional convolutional neural network14
A cassava common mosaic virus vector for virus-induced gene silencing in cassava14
Study on canopy extraction method for narrowband spectral images based on superpixel color gradation skewness distribution features14
A streamlined guide RNA screening system for genome editing in Sorghum bicolor14
Methodology: non-invasive monitoring system based on standing wave ratio for detecting water content variations in plants13
Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture13
A model for genuineness detection in genetically and phenotypically similar maize variety seeds based on hyperspectral imaging and machine learning13
Tensor methods in data analysis of chromatography/mass spectroscopy-based plant metabolomics13
High-throughput phenotyping for non-destructive estimation of soybean fresh biomass using a machine learning model and temporal UAV data13
Axial variation in flexural stiffness of plant stem segments: measurement methods and the influence of measurement uncertainty13
Combining novel feature selection strategy and hyperspectral vegetation indices to predict crop yield13
Identification of the initial water-site and movement in Gleditsia sinensis seeds and its relation to seed coat structure13
Soybean cyst nematode detection and management: a review13
Correction: Maximizing efficiency in sunflower breeding through historical data optimization12
Leaf area index estimation model for UAV image hyperspectral data based on wavelength variable selection and machine learning methods12
Correction: Revisiting superiority and stability metrics of cultivar performances using genomic data: derivations of new estimators12
Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging12
Species-specific basecallers improve actual accuracy of nanopore sequencing in plants12
Highly efficient Agrobacterium rhizogenes-mediated transformation for functional analysis in woodland strawberry12
A comprehensive tool in recycling plant-waste of Gossypium barbadense L agricultural and industrial waste extracts containing gossypin and gossypol: hepatoprotective, anti-inflammatory and antioxidant11
Evaporative flux method of leaf hydraulic conductance estimation: sources of uncertainty and reporting format recommendation11
Automatic freezing-tolerant rapeseed material recognition using UAV images and deep learning11
Terrestrial laser scanning and low magnetic field digitization yield similar architectural coarse root traits for 32-year-old Pinus ponderosa trees11
Atmospheric correction of vegetation reflectance with simulation-trained deep learning for ground-based hyperspectral remote sensing11
Segmentation and characterization of macerated fibers and vessels using deep learning11
Applying quantitative spatial phenotypes analysis to the investigation of peltate glandular trichomes development pattern in Perilla frutescens11
A highly efficient protocol for isolation of protoplast from China, Assam and Cambod types of tea plants [Camellia sinensis (L.) O. Kuntze]11
Publisher Correction: New improvements in grapevine genome editing: high efficiency biallelic homozygous knock-out from regenerated plantlets by using an optimized zCas9i11
‘Single-Seed-SpeedBulks:’ a protocol that combines ‘speed breeding’ with a cost-efficient modified single-seed descent method for rapid-generation-advancement in oat (Avena sativa L.)11
Innovation of strip fertilization planting for rice straw crushing with back-throwing and interrow-laying11
A comprehensive review of in planta stable transformation strategies11
Correction: YOLO POD: a fast and accurate multi-task model for dense Soybean Pod counting11
Development of a highly efficient virus-free regeneration system of Salvia miltiorrhiza from Sichuan using apical meristem as explants10
Quantitative MRI imaging of parenchyma and venation networks in Brassica napus leaves: effects of development and dehydration10
Image analysis and polyphenol profiling unveil red-flesh apple phenotype complexity10
Gray mold and anthracnose disease detection on strawberry leaves using hyperspectral imaging10
Optimization of ribosome profiling in plants including structural analysis of rRNA fragments10
Crossing multiple life stages: fine-grained classification of agricultural pests10
ShinyCore: An R/Shiny program for establishing core collection based on single nucleotide polymorphism data10
Combination of long-term 13CO2 labeling and isotopolog profiling allows turnover analysis of photosynthetic pigments in Arabidopsis leaves10
Cryopreservation of Abies alba × A. numidica and Pinus nigra embryogenic tissues by stepwise dehydration method10
Two Arabidopsis promoters drive seed-coat specific gene expression in pennycress and camelina10
Effects of cushion box and closed let-down ladder usage on damage to corn during handling: physiological deterioration9
X-ray driven peanut trait estimation: computer vision aided agri-system transformation9
A novel in-situ-process technique constructs whole circular cpDNA library9
Mechanism of self-recovery of hydrophobicity after surface damage of lotus leaf9
Feature enhancement guided network for yield estimation of high-density jujube9
K-seq, an affordable, reliable, and open Klenow NGS-based genotyping technology9
Rapid non-destructive method to phenotype stomatal traits9
An exploration of the influence of ZnO NPs treatment on germination of radish seeds under salt stress based on the YOLOv8-R lightweight model9
Cucumber mosaic virus-induced gene and microRNA silencing in water dropwort (Oenanthe javanica (Blume) DC)9
Computational fluid dynamics simulation analysis of the effect of curved rice leaves on the deposition behaviour of droplets9
Exploring genetic variability under extended photoperiod in lentil (Lens Culinaris Medik): vegetative and phenological differentiation according to genetic material’s origins9
A rapid assay for assessing bacterial effects on Arabidopsis thermotolerance9
Standardization of electrolyte leakage data and a novel liquid nitrogen control improve measurements of cold hardiness in woody tissue9
Texture feature extraction from microscope images enables a robust estimation of ER body phenotype in Arabidopsis9
Semantic segmentation of plant roots from RGB (mini-) rhizotron images—generalisation potential and false positives of established methods and advanced deep-learning models9
Clarification of the infection pattern of Xanthomonas citri subsp. citri on citrus fruit by artificial inoculation9
A procedure for Dex-induced gene transactivation in Arabidopsis ovules9
A fast method to evaluate in a combinatorial manner the synergistic effect of different biostimulants for promoting growth or tolerance against abiotic stress8
A simple and efficient method to quantify the cell parameters of the seed coat, embryo and silique wall in rapeseed8
Meta-analysis of the role of zinc in coordinating absorption of mineral elements in wheat seedlings8
RiboPlotR: a visualization tool for periodic Ribo-seq reads8
Whole mount multiplexed visualization of DNA, mRNA, and protein in plant-parasitic nematodes8
Synchrotron tomography applications in agriculture and food sciences research: a review8
Targeted mRNA demethylation in Arabidopsis using plant m6A editor8
Evaluation of genetic stability in olive callus-induced and meristem-induced shoots using flow cytometry and amplified fragment length polymorphism techniques8
Chemoinformatics-driven classification of Angiosperms using sulfur-containing compounds and machine learning algorithm8
Local mapping of root orientation traits by X-ray micro-CT and 3d image analysis: A study case on carrot seedlings grown in simulated vs real weightlessness8
Novel in silico screening system for plant defense activators using deep learning-based prediction of reactive oxygen species accumulation8
Optimization of the selection of suitable harvesting periods for medicinal plants: taking Dendrobium officinale as an example8
Four-dimensional measurement of root system development using time-series three-dimensional volumetric data analysis by backward prediction8
A pin-based probe for electronic moisture meters to determine moisture content in a single wheat kernel8
Non-wounding contact-based Inoculation of fruits with fungal pathogens in postharvest8
Improved wood species identification based on multi-view imagery of the three anatomical planes8
0.66109585762024