Plant Methods

Article	Citations
TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images	108
The influence of water content on the longitudinal modulus of elasticity of maize stalk pith and rind tissues	90
A novel method for extraction of high purity and high production Phytophthora sojae oospores	78
Stability investigation of air-dried olive ribo nucleic acids for metavirome studies	71
Orchid2024: A cultivar-level dataset and methodology for fine-grained classification of Chinese Cymbidium Orchids	65
Fast estimation of plant growth dynamics using deep neural networks	62
Electrical impedance spectroscopy (EIS) in plant roots research: a review	60
The semi-automated development of plant cell wall finite element models	57
Optimized synthesis of layered double hydroxide lactate nanosheets and their biological effects on Arabidopsis seedlings	50
Complementarity of Raman and Infrared spectroscopy for rapid characterization of fucoidan extracts	49
Development of a multi-targeted real-time PCR assay for the detection of the grapevine pathogen Xylophilus ampelinus	49
Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two	48
An automated method for stem diameter measurement based on laser module and deep learning	46
Real-time monitoring of Ralstonia solanacearum infection progress in tomato and Arabidopsis using bioluminescence imaging technology	45
The isolation strategy and chemical analysis of oil cells from Asari Radix et Rhizoma	43
Estimation of cotton canopy parameters based on unmanned aerial vehicle (UAV) oblique photography	42
Orthogonal control of gene expression in plants using synthetic promoters and CRISPR-based transcription factors	42
A deep learning approach to track Arabidopsis seedlings’ circumnutation from time-lapse videos	40
Non-destructive real-time monitoring of underground root development with distributed fiber optic sensing	38
Coconut tree modeling based on abiotic factors and modified cosserat rod theory	37
Classification of multi-year and multi-variety pumpkin seeds using hyperspectral imaging technology and three-dimensional convolutional neural network	35
Determination of phosphorus compounds in plant tissues: from colourimetry to advanced instrumental analytical chemistry	35
A simple and efficient method to quantify the cell parameters of the seed coat, embryo and silique wall in rapeseed	35
RiboPlotR: a visualization tool for periodic Ribo-seq reads	34
Combination of long-term 13CO2 labeling and isotopolog profiling allows turnover analysis of photosynthetic pigments in Arabidopsis leaves	33

Improved estimation of forage nitrogen in alpine grassland by integrating Sentinel-2 and SIF data	32
pSIG plasmids, MoClo-compatible vectors for efficient production of chimeric double-stranded RNAs in Escherichia coli HT115 (DE3) strain	32
Innovation of strip fertilization planting for rice straw crushing with back-throwing and interrow-laying	31
Novel in silico screening system for plant defense activators using deep learning-based prediction of reactive oxygen species accumulation	30
Optimization of ribosome profiling in plants including structural analysis of rRNA fragments	30
Non-destructive detection of early wheat germination via deep learning-optimized terahertz imaging	29
Improved wood species identification based on multi-view imagery of the three anatomical planes	28
Meta-analysis of the role of zinc in coordinating absorption of mineral elements in wheat seedlings	28
Detection of TuMV by a toehold switch sensor coupled with NASBA amplification in Pseudostellaria heterophylla	28
Local mapping of root orientation traits by X-ray micro-CT and 3d image analysis: A study case on carrot seedlings grown in simulated vs real weightlessness	28
Installation and imaging of thousands of minirhizotrons to phenotype root systems of field-grown plants	27
The evaluation of different combinations of enzyme set, aligner and caller in GBS sequencing of soybean	27
High-throughput estimation of allele frequencies using combined pooled-population sequencing and haplotype-based data processing	27
Synchrotron tomography applications in agriculture and food sciences research: a review	27
Assembly and operation of an imaging system for long-term monitoring of bioluminescent and fluorescent reporters in plants	27
An improved bacterial mRNA enrichment strategy in dual RNA sequencing to unveil the dynamics of plant-bacterial interactions	27
Development and application of a virus-induced gene silencing protocol for the study of gene function in narrow-leafed lupin	26
A new and effective method to induce infection of Phyllachora maydis into corn for tar spot studies in controlled environments	26
A statistical method for high-throughput emergence rate calculation for soybean breeding plots based on field phenotypic characteristics	26
Automatic rape flower cluster counting method based on low-cost labelling and UAV-RGB images	25
Improvement of germination rate and hybridization to facilitate breeding of an industrial oil crop, Euphorbia lagascae Spreng	24
An advanced method for the release, enrichment and purification of high-quality Arabidopsis thaliana rosette leaf trichomes enables profound insights into the trichome proteome	24
A high-throughput phenotyping method for sugarcane rind penetrometer resistance and breaking force characterization by near-infrared spectroscopy	24
Automated, image-based disease measurement for phenotyping resistance to soybean frogeye leaf spot	23
ScAnalyzer: an image processing tool to monitor plant disease symptoms and pathogen spread in Arabidopsis thaliana leaves	23
A rapid and non-destructive method for spatial–temporal quantification of colonization by Pseudomonas syringae pv. tomato DC3000 in Arabidopsis and tomato	23
RGB image-based method for phenotyping rust disease progress in pea leaves using R	22
DWTFormer: a frequency-spatial features fusion model for tomato leaf disease identification	22
GrainNet: efficient detection and counting of wheat grains based on an improved YOLOv7 modeling	22
A method of two-dimensional correlation spectroscopy combined with residual neural network for comparison and differentiation of medicinal plants raw materials superior to traditional machine learning	22
Evaluation of deep learning for predicting rice traits using structural and single-nucleotide genomic variants	22
Machine learning provides specific detection of salt and drought stresses in cucumber based on miRNA characteristics	22
SYMPATHIQUE: image-based tracking of symptoms and monitoring of pathogenesis to decompose quantitative disease resistance in the field	21
Statistical analysis of organelle movement using state-space models	21
Ribozyme-mediated CRISPR/Cas9 gene editing in pyrethrum (Tanacetum cinerariifolium) hairy roots using a RNA polymerase II-dependent promoter	21
A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation	21
Inter-row navigation line detection for cotton with broken rows	21
BerryPortraits: Phenotyping Of Ripening Traits in cranberry (Vaccinium macrocarpon Ait.) with YOLOv8	21
Using near-infrared spectroscopy to predict nitrogen and phosphorus concentrations of herbarium specimens under different storage conditions	21
In vitro micropropagation protocols for two endangered Dianthus species - via in vitro culture for conservation and recultivation purposes	21
WheatLFANet: in-field detection and counting of wheat heads with high-real-time global regression network	21
Scoring the number of B chromosomes in Zea mays L. using droplet digital PCR assay	20
Evaluation of an intelligent artificial climate chamber for high-throughput crop phenotyping in wheat	20
A compact deep learning approach integrating depthwise convolutions and spatial attention for plant disease classification	20
Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model	20
Quantitative phenotyping of crop roots with spectral electrical impedance tomography: a rhizotron study with optimized measurement design	20
Rapid Ragi: A speed breeding protocol for finger millet	20
Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea	20
Optimization of preparation conditions for Salsola laricifolia protoplasts using response surface methodology and artificial neural network modeling	20
Estimation of plant height and yield based on UAV imagery in faba bean (Vicia faba L.)	19

Detection and characterization of spike architecture based on deep learning and X-ray computed tomography in barley	19
A hybrid CNN–SVM classifier for weed recognition in winter rape field	19
An electrophoretic mobility shift assay using the protein isolated from host plants	19
Wheat physiology predictor: predicting physiological traits in wheat from hyperspectral reflectance measurements using deep learning	18
Mapping of cotton bolls and branches with high-granularity through point cloud segmentation	18
Transmembrane potential, an indicator in situ reporting cellular senescence and stress response in plant tissues	18
Spectral estimation of the aboveground biomass of cotton under water–nitrogen coupling conditions	18
Assessing data analysis techniques in a high-throughput meiosis-like induction detection system	18
A vector-free gene interference system using delaminated Mg–Al-lactate layered double hydroxide nanosheets as molecular carriers to intact plant cells	17
Insights into lncRNA-mediated regulatory networks in Hevea brasiliensis under anthracnose stress	17
ADAM-DETR: an intelligent rice disease detection method based on adaptive multi-scale feature fusion	17
A custom library construction method for super-resolution ribosome profiling in Arabidopsis	17
A method to determine antifungal activity in seed exudates by nephelometry	17
Mitochondrial DNA editing in potato through mitoTALEN and mitoTALECD: molecular characterization and stability of editing events	17
Pre-trained protein language model sheds new light on the prediction of Arabidopsis protein–protein interactions	17
SeedSeg: image-based transgenic seed counting for segregation analysis of T-DNA loci	17
Spatial and Texture Analysis of Root System distribution with Earth mover’s Distance (STARSEED)	16
Acceleration of wheat breeding: enhancing efficiency and practical application of the speed breeding system	16
Low-cost and reliable substrate-based phenotyping platform for screening salt tolerance of cutting propagation-dependent grass, paspalum vaginatum	16
Monitoring of plant water uptake by measuring root dielectric properties on a fine timescale: diurnal changes and response to leaf excision	16
A high-throughput approach for quantifying turgor loss point in grapevine	16
Intelligent identification on cotton verticillium wilt based on spectral and image feature fusion	16
Eggsplorer: a rapid plant–insect resistance determination tool using an automated whitefly egg quantification algorithm	16
AraDQ: an automated digital phenotyping software for quantifying disease symptoms of flood-inoculated Arabidopsis seedlings	16
Correction: Whole mount multiplexed visualization of DNA, mRNA, and protein in plant-parasitic nematodes	16
Optimizing cannabis cultivation: an efficient in vitro system for flowering induction	16
Automating high-throughput screening for anthracnose resistance in common bean using allele specific PCR	16
Mapping and quantifying unique branching structures in lentil (Lens culinaris Medik.)	16
Tracking deuterium uptake in hydroponically grown maize roots using correlative helium ion microscopy and Raman micro-spectroscopy	15
A deep learning approach for deriving wheat phenology from near-surface RGB image series using spatiotemporal fusion	15
CMSAF-Net: integrative network design with enhanced decoder for precision segmentation of pear leaf diseases	15
Advancing radiation-induced mutant screening through high-throughput technology: a preliminary evaluation of mutant screening in Arabidopsis thaliana	15
Identifying and mapping individual medicinal plant Lamiophlomis rotata at high elevations by using unmanned aerial vehicles and deep learning	15
An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in peach reproductive tissues	15
Efficient mutagenesis and genotyping of maize inbreds using biolistics, multiplex CRISPR/Cas9 editing, and Indel-Selective PCR	15
CRISPR-Cas13a as a next-generation tool for rapid and precise plant RNA virus diagnostics	15
Accelerating eucalypt clone selection pipeline via cloned progeny trials and molecular data	15
One pattern analysis (OPA) for the quantitative determination of protein interactions in plant cells	15
A novel selection model based on multivariate methods and arbitrary genetic parameters: a case study on tomato families	15
BioCurve Analyzer: a web-based shiny app for analyzing biological response curves	15
A novel method for measuring heat injury in leaves provides insights into the sequence of processes of heat injury development	15
Sensor-based phenotyping of above-ground plant-pathogen interactions	15
Publisher Correction: New improvements in grapevine genome editing: high efficiency biallelic homozygous knock-out from regenerated plantlets by using an optimized zCas9i	15
Phenotyping seedlings for selection of root system architecture in alfalfa (Medicago sativa L.)	15
Segmentation and counting of wheat spike grains based on deep learning and textural feature	14
Establishment of a low-temperature immersion method for extracting high-activity and high-purity mitochondria from Syntrichia caninervis Mitt.	14
De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L.	14
Combining novel feature selection strategy and hyperspectral vegetation indices to predict crop yield	14
A CNN model for early detection of pepper Phytophthora blight using multispectral imaging, integrating spectral and textural information	14
Determining water status of walnut orchards using the crop water stress index and canopy temperature measurements	14
YOLO-PEST: a novel rice pest detection approach based on YOLOv5s	14
RP-DETR: end-to-end rice pests detection using a transformer	14
Characterizing the effects of different chemicals on stem bending of cut snapdragon flower	14
Utilizing X-ray radiography for non-destructive assessment of paddy rice grain quality traits	14
Apnet: Lightweight network for apricot tree disease and pest detection in real-world complex backgrounds	14
Simple and efficient isolation of plant genomic DNA using magnetic ionic liquids	14
A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction	13
Non-wounding contact-based Inoculation of fruits with fungal pathogens in postharvest	13
Development of a highly efficient virus-free regeneration system of Salvia miltiorrhiza from Sichuan using apical meristem as explants	13
Correction: Rapid and cost-effective molecular karyotyping in wheat, barley, and their crossprogeny by chromosome-specific multiplex PCR	13
A rapid and efficient in vivo inoculation method for introducing tree stem canker pathogens onto leaves: suitable for large-scale assessment of resistance in poplar breeding progeny	13
ShinyCore: An R/Shiny program for establishing core collection based on single nucleotide polymorphism data	13
Improved genomic prediction using machine learning with Variational Bayesian sparsity	13
Characterization of leaf surface phenotypes based on light interaction	13
Establishment of an efficient tissue culture system for Paeonia ostii by combining vernalization and etiolation pretreatment with optimized culture conditions	13
Yield estimation of high-density cotton fields using low-altitude UAV imaging and deep learning	13
Accelerating leaf area measurement using a volumetric approach	12
Clarification of the infection pattern of Xanthomonas citri subsp. citri on citrus fruit by artificial inoculation	12
Dual discriminator GAN-based synthetic crop disease image generation for precise crop disease identification	12
Low-cost and automated phenotyping system “Phenomenon” for multi-sensor in situ monitoring in plant in vitro culture	12
RhizoMAP: a comprehensive, nondestructive, and sensitive platform for metabolic imaging of the rhizosphere	12
SSR_VibraProfiler: a Python package for accurate classification of varieties using SSRs with intra-variety specificity and inter-variety polymorphism	12
Efficient induction of tetraploids via adventitious bud regeneration and subsequent phenotypic variation in Acacia melanoxylon	12
PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over time	12
Gray mold and anthracnose disease detection on strawberry leaves using hyperspectral imaging	12
Assessing and avoiding C isotopic contamination artefacts in mesocosm-scale 13CO2/12CO2 labelling systems: from biomass components to purified carbohydrates and dark respiration	12
A cell P system with membrane division and dissolution rules for soybean leaf disease recognition	12
Deep learning for detecting herbicide weed control spectrum in turfgrass	11
DNA-free high-quality RNA extraction from 39 difficult-to-extract plant species (representing seasonal tissues and tissue types) of 32 families, and its validation for downstream molecular application	11
NRTPredictor: identifying rice root cell state in single-cell RNA-seq via ensemble learning	11

The mechanisms and prediction of non-structural carbohydrates accretion and depletion after mechanical wounding in slash pine (Pinus elliottii) using near-infrared reflectance spectroscopy	11
YOLOV8-CMS: a high-accuracy deep learning model for automated citrus leaf disease classification and grading	11
A novel approach integrating multispectral imaging and machine learning to identify seed maturity and vigor in smooth bromegrass	11
Overexpressing Arabidopsis thaliana ACBP6 in transgenic rapid-cycling Brassica napus confers cold tolerance	11
Swin-Unet++: a study on phenotypic parameter analysis of cabbage seedling roots	11
Photolysis of caged cytokinin in single cells of Arabidopsis thaliana	11
Establishment of an NPK nutrient monitor system in yield-graded cotton petioles under drip irrigation	11
Development of a semi-open chamber system for the gas exchange measurement of whole-canopy under steady and unsteady states in cucumber seedlings	11