Biology Direct

(The median citation count of Biology Direct is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 500 papers]. The publications cover those that have been published in the past four years, i.e., from 2019-10-01 to 2023-10-01.)
AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock477
COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein55
Pathophysiology of Crohn’s disease inflammation and recurrence53
Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status37
Can COVID-19 pandemic boost the epidemic of neurodegenerative diseases?37
Inter-organelle membrane contact sites: implications for lipid metabolism37
A novel framework for horizontal and vertical data integration in cancer studies with application to survival time prediction models33
Cancer predictive studies33
Predictability of drug-induced liver injury by machine learning27
A link between mitotic defects and mitotic catastrophe: detection and cell fate26
The p53 family member p73 in the regulation of cell stress response26
High-fat diet impairs ferroptosis and promotes cancer invasiveness via downregulating tumor suppressor ACSL4 in lung adenocarcinoma25
Prediction and mechanistic analysis of drug-induced liver injury (DILI) based on chemical structure23
More support for Earth’s massive microbiome22
Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling21
Understanding p53 tumour suppressor network20
The immune system view of the coronavirus SARS-CoV-218
Micronucleus production, activation of DNA damage response and cGAS-STING signaling in syncytia induced by SARS-CoV-2 infection18
Diverse approaches to predicting drug-induced liver injury using gene-expression profiles18
Redressing the interactions between stem cells and immune system in tissue regeneration17
Lifestyle-dependent microglial plasticity: training the brain guardians17
Mini-review: advances in 3D bioprinting of vascularized constructs15
Integrative analysis of the salt stress response in cyanobacteria14
Environmental metagenome classification for constructing a microbiome fingerprint14
Long non-coding RNA LINC00426 contributes to doxorubicin resistance by sponging miR-4319 in osteosarcoma14
The periosteum: a simple tissue with many faces, with special reference to the antler-lineage periostea14
Why call it developmental bias when it is just development?14
NUAK2 and RCan2 participate in the p53 mutant pro-tumorigenic network14
Commensal microbes and p53 in cancer progression13
Migrasomes, new vescicles as Hansel and Gretel white pebbles?13
Circ_0067680 expedites the osteogenic differentiation of human bone marrow-derived mesenchymal stem cells through miR-4429/CTNNB1/Wnt/β-catenin pathway13
Differentially expressed tRFs in CD5 positive relapsed & refractory diffuse large B cell lymphoma and the bioinformatic analysis for their potential clinical use13
Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data11
Unraveling city-specific signature and identifying sample origin locations for the data from CAMDA MetaSUB challenge11
p53 regulates expression of nuclear envelope components in cancer cells11
mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation11
Transcription factor KLF15 inhibits the proliferation and migration of gastric cancer cells via regulating the TFAP2A-AS1/NISCH axis11
p53-driven lipidome influences non-cell-autonomous lysophospholipids in pancreatic cancer11
An ensemble learning approach for modeling the systems biology of drug-induced injury10
Principles and biological concepts of heredity before Mendel10
A machine learning framework to determine geolocations from metagenomic profiling10
Study on the mechanism of LOXL1-AS1/miR-3614-5p/YY1 signal axis in the malignant phenotype regulation of hepatocellular carcinoma10
LncRNA Airn alleviates diabetic cardiac fibrosis by inhibiting activation of cardiac fibroblasts via a m6A-IMP2-p53 axis9
Rab32 uses its effector reticulon 3L to trigger autophagic degradation of mitochondria-associated membrane (MAM) proteins9
Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites9
Identification of a prognostic cuproptosis-related signature in hepatocellular carcinoma9
Targeting PDZ domains as potential treatment for viral infections, neurodegeneration and cancer8
Long non-coding RNA SNHG8 enhances triple-negative breast cancer cell proliferation and migration by regulating the miR-335-5p/PYGO2 axis8
N6-methyladenosine-mediated SH3BP5-AS1 upregulation promotes GEM chemoresistance in pancreatic cancer by activating the Wnt signaling pathway8
Serological determinants of COVID-198
Long-range enhancement of N501Y-endowed mouse infectivity of SARS-CoV-2 by the non-RBD mutations of Ins215KLRS and H655Y8
Fingerprinting cities: differentiating subway microbiome functionality8
On the definition of a self-sustaining chemical reaction system and its role in heredity8
Total neoadjuvant therapy for the treatment of locally advanced rectal cancer: a systematic minireview7
LINC00885 promotes cervical cancer progression through sponging miR-3150b-3p and upregulating BAZ2A7
Retrotransposon gag-like 1 (RTL1) and the molecular evolution of self-targeting imprinted microRNAs7
Ablation of Fam20c causes amelogenesis imperfecta via inhibiting Smad dependent BMP signaling pathway7
LncRNA NORAD facilitates oral squamous cell carcinoma progression by sponging miR-577 to enhance TPM46
Origin of the nuclear proteome on the basis of pre-existing nuclear localization signals in prokaryotic proteins6
Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows6
NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information6
CXCL1 promotes colon cancer progression through activation of NF-κB/P300 signaling pathway6
In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials6
A novel gene selection method for gene expression data for the task of cancer type classification6
LncRNA MIR205HG accelerates cell proliferation, migration and invasion in hepatoblastoma through the activation of MAPK signaling pathway and PI3K/AKT signaling pathway6
Long non-coding RNAs affecting cell metabolism in cancer6
The archaeal-bacterial lipid divide, could a distinct lateral proton route hold the answer?5
Common pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers5
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data5
H3K27ac-activated EGFR-AS1 promotes cell growth in cervical cancer through ACTN4-mediated WNT pathway5
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis5
Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions4
Intron losses and gains in the nematodes4
ADSC-derived exosomes attenuate myocardial infarction injury by promoting miR-205-mediated cardiac angiogenesis4
Dual-labeled nanoparticles based on small extracellular vesicles for tumor detection4
Expression of Synj2bp in mouse liver regulates the extent of wrappER-mitochondria contact to maintain hepatic lipid homeostasis4
M2 macrophage-derived exosomal miR-193b-3p promotes progression and glutamine uptake of pancreatic cancer by targeting TRIM624
Integration of human cell lines gene expression and chemical properties of drugs for Drug Induced Liver Injury prediction4
Structural modelling of the lumenal domain of human GPAA1, the metallo-peptide synthetase subunit of the transamidase complex, reveals zinc-binding mode and two flaps surrounding the active site3
The current state of molecular profiling in gastrointestinal malignancies3
About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature3
Alamandine alleviated heart failure and fibrosis in myocardial infarction mice3
Division of labour in a matrix, rather than phagocytosis or endosymbiosis, as a route for the origin of eukaryotic cells3
Pan-cancer analysis of cuproptosis regulation patterns and identification of mTOR-target responder in clear cell renal cell carcinoma3
LINC00858 stabilizes RAN expression and promotes metastasis of gastric cancer3
The role of LINC01419 in regulating the cell stemness in lung adenocarcinoma through recruiting EZH2 and regulating FBP1 expression3
HIV-1LAI Nef blocks the development of hematopoietic stem/progenitor cells into myeloid-erythroid lineage cells3
Small extracellular vesicles derived from Nrf2-overexpressing human amniotic mesenchymal stem cells protect against lipopolysaccharide-induced acute lung injury by inhibiting NLRP33
A functional reference map of the RNF8 interactome in cancer3
Downregulation of amphiregulin improves cardiac hypertrophy via attenuating oxidative stress and apoptosis3