OOIR: Observatory of International Research

Papers

(The median citation count of Biology Direct is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4	111
Pathophysiology of Crohn’s disease inflammation and recurrence	75
COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein	60
Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status	46
Can COVID-19 pandemic boost the epidemic of neurodegenerative diseases?	42
A link between mitotic defects and mitotic catastrophe: detection and cell fate	38
Inter-organelle membrane contact sites: implications for lipid metabolism	38
Cancer predictive studies	36
The p53 family member p73 in the regulation of cell stress response	35
High-fat diet impairs ferroptosis and promotes cancer invasiveness via downregulating tumor suppressor ACSL4 in lung adenocarcinoma	31
Understanding p53 tumour suppressor network	30
Prediction and mechanistic analysis of drug-induced liver injury (DILI) based on chemical structure	29
Micronucleus production, activation of DNA damage response and cGAS-STING signaling in syncytia induced by SARS-CoV-2 infection	26
More support for Earth’s massive microbiome	25
Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling	22
Redressing the interactions between stem cells and immune system in tissue regeneration	20
ADSC-derived exosomes attenuate myocardial infarction injury by promoting miR-205-mediated cardiac angiogenesis	19
The immune system view of the coronavirus SARS-CoV-2	19
Lifestyle-dependent microglial plasticity: training the brain guardians	19
Migrasomes, new vescicles as Hansel and Gretel white pebbles?	18
LncRNA Airn alleviates diabetic cardiac fibrosis by inhibiting activation of cardiac fibroblasts via a m6A-IMP2-p53 axis	18
p53-driven lipidome influences non-cell-autonomous lysophospholipids in pancreatic cancer	18
p53 regulates expression of nuclear envelope components in cancer cells	18
Integrative analysis of the salt stress response in cyanobacteria	17
Mini-review: advances in 3D bioprinting of vascularized constructs	16

Why call it developmental bias when it is just development?	16
Long non-coding RNA LINC00426 contributes to doxorubicin resistance by sponging miR-4319 in osteosarcoma	16
NUAK2 and RCan2 participate in the p53 mutant pro-tumorigenic network	16
The periosteum: a simple tissue with many faces, with special reference to the antler-lineage periostea	15
Identification of a prognostic cuproptosis-related signature in hepatocellular carcinoma	15
Transcription factor KLF15 inhibits the proliferation and migration of gastric cancer cells via regulating the TFAP2A-AS1/NISCH axis	15
Commensal microbes and p53 in cancer progression	14
Circ_0067680 expedites the osteogenic differentiation of human bone marrow-derived mesenchymal stem cells through miR-4429/CTNNB1/Wnt/β-catenin pathway	14
Unraveling city-specific signature and identifying sample origin locations for the data from CAMDA MetaSUB challenge	13
Long non-coding RNAs affecting cell metabolism in cancer	13
N6-methyladenosine-mediated SH3BP5-AS1 upregulation promotes GEM chemoresistance in pancreatic cancer by activating the Wnt signaling pathway	13
Long non-coding RNA SNHG8 enhances triple-negative breast cancer cell proliferation and migration by regulating the miR-335-5p/PYGO2 axis	13
Targeting PDZ domains as potential treatment for viral infections, neurodegeneration and cancer	12
A machine learning framework to determine geolocations from metagenomic profiling	11
Study on the mechanism of LOXL1-AS1/miR-3614-5p/YY1 signal axis in the malignant phenotype regulation of hepatocellular carcinoma	11
Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data	11
Total neoadjuvant therapy for the treatment of locally advanced rectal cancer: a systematic minireview	11
CXCL1 promotes colon cancer progression through activation of NF-κB/P300 signaling pathway	10
An ensemble learning approach for modeling the systems biology of drug-induced injury	10
Principles and biological concepts of heredity before Mendel	10
Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites	9
Rab32 uses its effector reticulon 3L to trigger autophagic degradation of mitochondria-associated membrane (MAM) proteins	9
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis	9
On the definition of a self-sustaining chemical reaction system and its role in heredity	9
Serological determinants of COVID-19	9
A novel gene selection method for gene expression data for the task of cancer type classification	8
Long-range enhancement of N501Y-endowed mouse infectivity of SARS-CoV-2 by the non-RBD mutations of Ins215KLRS and H655Y	8
Ablation of Fam20c causes amelogenesis imperfecta via inhibiting Smad dependent BMP signaling pathway	8
In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials	8
LINC00885 promotes cervical cancer progression through sponging miR-3150b-3p and upregulating BAZ2A	8
LncRNA MIR205HG accelerates cell proliferation, migration and invasion in hepatoblastoma through the activation of MAPK signaling pathway and PI3K/AKT signaling pathway	8
M2 macrophage-derived exosomal miR-193b-3p promotes progression and glutamine uptake of pancreatic cancer by targeting TRIM62	8
The archaeal-bacterial lipid divide, could a distinct lateral proton route hold the answer?	7
Expression of Synj2bp in mouse liver regulates the extent of wrappER-mitochondria contact to maintain hepatic lipid homeostasis	7
IGF2BP2 promotes colorectal cancer progression by upregulating the expression of TFRC and enhancing iron metabolism	7
LncRNA NORAD facilitates oral squamous cell carcinoma progression by sponging miR-577 to enhance TPM4	7
NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information	6
About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature	6
LINC00858 stabilizes RAN expression and promotes metastasis of gastric cancer	6
Dual-labeled nanoparticles based on small extracellular vesicles for tumor detection	6
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data	6
Pan-cancer analysis of cuproptosis regulation patterns and identification of mTOR-target responder in clear cell renal cell carcinoma	6
Alamandine alleviated heart failure and fibrosis in myocardial infarction mice	6
Origin of the nuclear proteome on the basis of pre-existing nuclear localization signals in prokaryotic proteins	6
Small extracellular vesicles derived from Nrf2-overexpressing human amniotic mesenchymal stem cells protect against lipopolysaccharide-induced acute lung injury by inhibiting NLRP3	6
Common pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers	6
The current state of molecular profiling in gastrointestinal malignancies	5
H3K27ac-activated EGFR-AS1 promotes cell growth in cervical cancer through ACTN4-mediated WNT pathway	5
TM4SF1 upregulates MYH9 to activate the NOTCH pathway to promote cancer stemness and lenvatinib resistance in HCC	5
Identification and validation of a novel signature as a diagnostic and prognostic biomarker in colorectal cancer	5

Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions	5
Downregulation of amphiregulin improves cardiac hypertrophy via attenuating oxidative stress and apoptosis	4
Structural modelling of the lumenal domain of human GPAA1, the metallo-peptide synthetase subunit of the transamidase complex, reveals zinc-binding mode and two flaps surrounding the active site	4
HIV-1LAI Nef blocks the development of hematopoietic stem/progenitor cells into myeloid-erythroid lineage cells	4
The role of LINC01419 in regulating the cell stemness in lung adenocarcinoma through recruiting EZH2 and regulating FBP1 expression	4
Intron losses and gains in the nematodes	4
Integration of human cell lines gene expression and chemical properties of drugs for Drug Induced Liver Injury prediction	4
A functional reference map of the RNF8 interactome in cancer	4
Identification of fatty acid metabolism-related lncRNAs in the prognosis and immune microenvironment of colon adenocarcinoma	4
Long noncoding RNA PSMA3-AS1 functions as a competing endogenous RNA to promote gastric cancer progression by regulating the miR-329-3p/ALDOA axis	4
circACTR2 attenuates gemcitabine chemoresiatance in pancreatic cancer through PTEN mediated PI3K/AKT signaling pathway	3
Probing pathways by which rhynchophylline modifies sleep using spatial transcriptomics	3
Antitumoral effects of Bortezomib in malignant mesothelioma: evidence of mild endoplasmic reticulum stress in vitro and activation of T cell response in vivo	3
IPSC derived cardiac fibroblasts of DMD patients show compromised actin microfilaments, metabolic shift and pro-fibrotic phenotype	3
Long-term administration of Western diet induced metabolic syndrome in mice and causes cardiac microvascular dysfunction, cardiomyocyte mitochondrial damage, and cardiac remodeling involving caveolae	3
Differential adaptive RNA editing signals between insects and plants revealed by a new measurement termed haplotype diversity	3
Division of labour in a matrix, rather than phagocytosis or endosymbiosis, as a route for the origin of eukaryotic cells	3
Host-mediated RNA editing in viruses	3
MiR-19b-3p regulated by BC002059/ABHD10 axis promotes cell apoptosis in myocardial infarction	3
S-adenosylhomocysteine hydrolase-like protein 1 (AHCYL1) inhibits lung cancer tumorigenesis by regulating cell plasticity	2
Image-based modeling of vascular organization to evaluate anti-angiogenic therapy	2
Influenza virus-flow from insects to humans as causative for influenza seasonality	2
Microglial exosomes alleviate intermittent hypoxia-induced cognitive deficits by suppressing NLRP3 inflammasome	2
The power of randomization by sex in multilocus genetic evolution	2
USP24-dependent stabilization of Runx2 recruits a p300/NCOA3 complex to transactivate ADAMTS genes and promote degeneration of intervertebral disc in chronic inflammation mice	2
Long-read assembly of major histocompatibility complex and killer cell immunoglobulin-like receptor genome regions in cynomolgus macaque	2
Predicted functional interactome of Caenorhabditis elegans and a web tool for the functional interpretation of differentially expressed genes	2
LncRNA RP11-620J15.3 promotes HCC cell proliferation and metastasis by targeting miR-326/GPI to enhance glycolysis	2
ZNF330/NOA36 interacts with HSPA1 and HSPA8 and modulates cell cycle and proliferation in response to heat shock in HEK293 cells	2
Polymorphism on human aromatase affects protein dynamics and substrate binding: spectroscopic evidence	2
METTL3-induced lncRNA GBAP1 promotes hepatocellular carcinoma progression by activating BMP/SMAD pathway	2
Gene expression in organoids: an expanding horizon	2
Pro-tumorigenic role of lnc-ZNF30-3 as a sponge counteracting miR-145-5p in prostate cancer	2