OOIR: Observatory of International Research

Papers

(The median citation count of Biology Direct is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 500 papers]. The publications cover those that have been published in the past four years, i.e., from 2019-10-01 to 2023-10-01.)

Article	Citations
AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4	77
COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein	55
Pathophysiology of Crohn’s disease inflammation and recurrence	53
Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status	37
Can COVID-19 pandemic boost the epidemic of neurodegenerative diseases?	37
Inter-organelle membrane contact sites: implications for lipid metabolism	37
A novel framework for horizontal and vertical data integration in cancer studies with application to survival time prediction models	33
Cancer predictive studies	33
Predictability of drug-induced liver injury by machine learning	27
A link between mitotic defects and mitotic catastrophe: detection and cell fate	26
The p53 family member p73 in the regulation of cell stress response	26
High-fat diet impairs ferroptosis and promotes cancer invasiveness via downregulating tumor suppressor ACSL4 in lung adenocarcinoma	25
Prediction and mechanistic analysis of drug-induced liver injury (DILI) based on chemical structure	23
More support for Earth’s massive microbiome	22
Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling	21
Understanding p53 tumour suppressor network	20
The immune system view of the coronavirus SARS-CoV-2	18
Micronucleus production, activation of DNA damage response and cGAS-STING signaling in syncytia induced by SARS-CoV-2 infection	18
Diverse approaches to predicting drug-induced liver injury using gene-expression profiles	18
Redressing the interactions between stem cells and immune system in tissue regeneration	17
Lifestyle-dependent microglial plasticity: training the brain guardians	17
Mini-review: advances in 3D bioprinting of vascularized constructs	15
Integrative analysis of the salt stress response in cyanobacteria	14
Environmental metagenome classification for constructing a microbiome fingerprint	14
Long non-coding RNA LINC00426 contributes to doxorubicin resistance by sponging miR-4319 in osteosarcoma	14

The periosteum: a simple tissue with many faces, with special reference to the antler-lineage periostea	14
Why call it developmental bias when it is just development?	14
NUAK2 and RCan2 participate in the p53 mutant pro-tumorigenic network	14
Commensal microbes and p53 in cancer progression	13
Migrasomes, new vescicles as Hansel and Gretel white pebbles?	13
Circ_0067680 expedites the osteogenic differentiation of human bone marrow-derived mesenchymal stem cells through miR-4429/CTNNB1/Wnt/β-catenin pathway	13
Differentially expressed tRFs in CD5 positive relapsed & refractory diffuse large B cell lymphoma and the bioinformatic analysis for their potential clinical use	13
Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data	11
Unraveling city-specific signature and identifying sample origin locations for the data from CAMDA MetaSUB challenge	11
p53 regulates expression of nuclear envelope components in cancer cells	11
mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation	11
Transcription factor KLF15 inhibits the proliferation and migration of gastric cancer cells via regulating the TFAP2A-AS1/NISCH axis	11
p53-driven lipidome influences non-cell-autonomous lysophospholipids in pancreatic cancer	11
An ensemble learning approach for modeling the systems biology of drug-induced injury	10
Principles and biological concepts of heredity before Mendel	10
A machine learning framework to determine geolocations from metagenomic profiling	10
Study on the mechanism of LOXL1-AS1/miR-3614-5p/YY1 signal axis in the malignant phenotype regulation of hepatocellular carcinoma	10
LncRNA Airn alleviates diabetic cardiac fibrosis by inhibiting activation of cardiac fibroblasts via a m6A-IMP2-p53 axis	9
Rab32 uses its effector reticulon 3L to trigger autophagic degradation of mitochondria-associated membrane (MAM) proteins	9
Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites	9
Identification of a prognostic cuproptosis-related signature in hepatocellular carcinoma	9
Targeting PDZ domains as potential treatment for viral infections, neurodegeneration and cancer	8
Long non-coding RNA SNHG8 enhances triple-negative breast cancer cell proliferation and migration by regulating the miR-335-5p/PYGO2 axis	8
N6-methyladenosine-mediated SH3BP5-AS1 upregulation promotes GEM chemoresistance in pancreatic cancer by activating the Wnt signaling pathway	8
Serological determinants of COVID-19	8
Long-range enhancement of N501Y-endowed mouse infectivity of SARS-CoV-2 by the non-RBD mutations of Ins215KLRS and H655Y	8
Fingerprinting cities: differentiating subway microbiome functionality	8
On the definition of a self-sustaining chemical reaction system and its role in heredity	8
Total neoadjuvant therapy for the treatment of locally advanced rectal cancer: a systematic minireview	7
LINC00885 promotes cervical cancer progression through sponging miR-3150b-3p and upregulating BAZ2A	7
Retrotransposon gag-like 1 (RTL1) and the molecular evolution of self-targeting imprinted microRNAs	7
Ablation of Fam20c causes amelogenesis imperfecta via inhibiting Smad dependent BMP signaling pathway	7
LncRNA NORAD facilitates oral squamous cell carcinoma progression by sponging miR-577 to enhance TPM4	6
Origin of the nuclear proteome on the basis of pre-existing nuclear localization signals in prokaryotic proteins	6
Model-based exploration of the impact of glucose metabolism on the estrous cycle dynamics in dairy cows	6
NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information	6
CXCL1 promotes colon cancer progression through activation of NF-κB/P300 signaling pathway	6
In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials	6
A novel gene selection method for gene expression data for the task of cancer type classification	6
LncRNA MIR205HG accelerates cell proliferation, migration and invasion in hepatoblastoma through the activation of MAPK signaling pathway and PI3K/AKT signaling pathway	6
Long non-coding RNAs affecting cell metabolism in cancer	6
The archaeal-bacterial lipid divide, could a distinct lateral proton route hold the answer?	5
Common pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers	5
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data	5
H3K27ac-activated EGFR-AS1 promotes cell growth in cervical cancer through ACTN4-mediated WNT pathway	5
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis	5
Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions	4
Intron losses and gains in the nematodes	4
ADSC-derived exosomes attenuate myocardial infarction injury by promoting miR-205-mediated cardiac angiogenesis	4
Dual-labeled nanoparticles based on small extracellular vesicles for tumor detection	4

Expression of Synj2bp in mouse liver regulates the extent of wrappER-mitochondria contact to maintain hepatic lipid homeostasis	4
M2 macrophage-derived exosomal miR-193b-3p promotes progression and glutamine uptake of pancreatic cancer by targeting TRIM62	4
Integration of human cell lines gene expression and chemical properties of drugs for Drug Induced Liver Injury prediction	4
Structural modelling of the lumenal domain of human GPAA1, the metallo-peptide synthetase subunit of the transamidase complex, reveals zinc-binding mode and two flaps surrounding the active site	3
The current state of molecular profiling in gastrointestinal malignancies	3
About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature	3
Alamandine alleviated heart failure and fibrosis in myocardial infarction mice	3
Division of labour in a matrix, rather than phagocytosis or endosymbiosis, as a route for the origin of eukaryotic cells	3
Pan-cancer analysis of cuproptosis regulation patterns and identification of mTOR-target responder in clear cell renal cell carcinoma	3
LINC00858 stabilizes RAN expression and promotes metastasis of gastric cancer	3
The role of LINC01419 in regulating the cell stemness in lung adenocarcinoma through recruiting EZH2 and regulating FBP1 expression	3
HIV-1LAI Nef blocks the development of hematopoietic stem/progenitor cells into myeloid-erythroid lineage cells	3
Small extracellular vesicles derived from Nrf2-overexpressing human amniotic mesenchymal stem cells protect against lipopolysaccharide-induced acute lung injury by inhibiting NLRP3	3
A functional reference map of the RNF8 interactome in cancer	3
Downregulation of amphiregulin improves cardiac hypertrophy via attenuating oxidative stress and apoptosis	3