Molecular Systems Biology

Papers
(The H4-Index of Molecular Systems Biology is 36. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-01-01 to 2025-01-01.)
ArticleCitations
SLAM‐Drop‐seq reveals mRNA kinetic rates throughout the cell cycle315
Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation302
Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes204
ENDORSE: a prognostic model for endocrine therapy in estrogen‐receptor‐positive breast cancers179
Dengue virus preferentially uses human and mosquito non-optimal codons134
Stress‐sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis132
The population context is a driver of the heterogeneous response of epithelial cells to interferons105
Linking patient-specific basal MET phosphorylation levels to liver health96
Quantifying the phenotypic information in mRNA abundance95
µPhos: a scalable and sensitive platform for high-dimensional phosphoproteomics90
Uncovering the dynamics and consequences of RNA isoform changes during neuronal differentiation75
An integrative epigenome-based strategy for unbiased functional profiling of clinical kinase inhibitors72
A genome‐scale TF–DNA interaction network of transcriptional regulation ofArabidopsisprimary and specialized metabolism71
Engineering a genome‐reduced bacterium to eliminate Staphylococcus aureus biofilms in vivo71
Development and validation of AI/ML derived splice-switching oligonucleotides69
A new way of looking at transcription factor assays67
Exploring the microbial savanna: predator-prey interactions in the soil67
Analysis of proteome adaptation reveals a key role of the bacterial envelope in starvation survival61
A human kinase yeast array for the identification of kinases modulating phosphorylation‐dependent protein–protein interactions61
The circadian oscillator analysed at the single‐transcript level59
Systematic identification of 20S proteasome substrates53
Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd52
Multi‐modal meta‐analysis of cancer cell line omics profiles identifies ECHDC1 as a novel breast tumor suppressor51
Metabolic balance in colorectal cancer is maintained by optimal Wnt signaling levels48
Differentiation‐related epigenomic changes define clinically distinct keratinocyte cancer subclasses46
High diversity in Delta variant across countries revealed by genome‐wide analysis of SARS‐CoV‐2 beyond the Spike protein46
DOMINO: a network‐based active module identification algorithm with reduced rate of false calls46
TNF stimulation primarily modulates transcriptional burst size of NF‐κB‐regulated genes45
Hotspot propensity across mutational processes44
A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X44
Mass spectrometry‐based protein–protein interaction networks for the study of human diseases44
A highly multiplexed quantitative phosphosite assay for biology and preclinical studies43
Vesalius: high‐resolution in silico anatomization of spatial transcriptomic data using image analysis41
Quantitative contributions of TNF receptor superfamily members to CD8 + T‐cell responses38
Evolution of genome fragility enables microbial division of labor37
Dynamic human liver proteome atlas reveals functional insights into disease pathways36
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