Comparative Biochemistry and Physiology D-Genomics & Proteomics

Papers
(The TQCC of Comparative Biochemistry and Physiology D-Genomics & Proteomics is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-04-01 to 2025-04-01.)
ArticleCitations
Comparative transcriptome analysis reveals changes in gene expression in sea cucumber (Holothuria leucospilota) in response to acute temperature stress25
Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems20
Developing the ‘omic toolkit of comparative physiologists19
Roles and occurrences of microbiota in the osmoregulatory organs, gills and gut, in marine medaka upon hypotonic stress18
Sex matters: Gamete-specific contribution of microRNA following parental exposure to hypoxia in zebrafish15
Comparative transcriptome analysis reveals growth and molecular pathway of body color regulation in turbot (Scophthalmus maximus) exposed to different light spectrum15
Effects of Hermetia illucens larvae meal on the Pacific white shrimp (Litopenaeus vannamei) revealed by innate immunity and 16S rRNA gene sequencing analysis13
Transcriptome analysis of anorexic and preferred silkworms (Bombyx mori) on artificial diet13
Differences in body wall metabolites of Apostichopus japonicus of different ages in liquid chromatography-tandem mass spectrometry12
Influence of temperature variation on gene expression and cocoon production in Bombyx mori Linnaeus, 1758 (Lepidoptera: Bombycidae)12
Structure and gene expression changes of the gill and liver in juvenile black porgy (Acanthopagrus schlegelii) under different salinities11
Preliminary analysis of pathways and their implications during salinity stress in abalone11
Genes involved in the Type I pheromone biosynthesis pathway and chemoreception from the sex pheromone gland transcriptome of Dioryctria abietella11
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Proteomic changes in the extracellular environment of sea bass thymocytes exposed to 17α-ethinylestradiol in vitro10
Transcriptome analysis of growth and shell color between two genetic variants of Corbicula fluminea with different shell colors10
Identification and characterization of long non-coding RNAs in intestinal immune regulation of largemouth bass, Micropterus salmoides, under acute heat stress10
Integrated transcriptomic and proteomic analysis of the physiological changes of the liver in domesticated Eurasian perch, Perca fluviatilis10
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Integrated analysis of omics reveals the role of scapular fat in thermogenesis adaptation in sunite sheep9
Cadmium exposure elicited dynamic RNA m6A modification and epi-transcriptomic regulation in the Pacific whiteleg shrimp Litopenaeus vannamei9
Fast and slow myofiber-specific expression profiles are affected by noncoding RNAs in Mongolian horses9
Changes of mRNA, miRNA and lncRNA expression contributing to skeletal muscle differences between fetus and adult Mongolian horses9
Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica9
Study of carbonate alkalinity-induced hepatic tissue damage in Hefang crucian carp (Carassius auratus) based on transcriptomic analysis9
Comparative proteomic analysis of spleen reveals key immune-related proteins in the yak (Bos grunniens) at different growth stages9
Sex-dependent host-microbiome dynamics in zebrafish: Implications for toxicology and gastrointestinal physiology8
Toxin diversity revealed by de novo transcriptome assembly for venom gland in two species of spiders (Trichonephila clavata and Sinopoda pengi)8
Comparative proteomics elucidates the dynamics of ovarian development in the Chinese mitten crab Eriocheir sinensis8
Genetic dissection of crayfish (Procambarus clarkii) high temperature tolerance and assessment of the potential application in breeding of the HSP genes8
Transcriptome analysis of hepatopancreas from different living states oriental river prawn (Macrobrachium nipponense) in response to hypoxia8
Transcriptomic analysis of pituitary in female and male spotted scat (Scatophagus argus) after 17β-estradiol injection8
Transcriptome sequencing of wolf spider Lycosa sp. (Araneae: Lycosidae) venom glands provides insights into the evolution and diversity of disulfide-rich toxins8
Gonadal transcriptome analysis of paradise fish Macropodus opercularis to reveal sex-related genes8
Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in cobia (Rachycentron canadum) scales under hypoosmotic adaption7
Transcriptome comparison for identification of pigmentation-related genes in different color varieties of Siamese fighting fish Betta splendens7
Untargeted plasma metabolomic analysis of wild bottlenose dolphins (Tursiops truncatus) indicate protein degradation when in poorer health7
Mining Lygus hesperus (western tarnished plant bug) transcriptomic data for transient receptor potential channels: Expression profiling and functional characterization of a Painless homolog7
Comparative transcriptome and methylome analysis of the hindbrain in olive flounder (Paralichthys olivaceus) considering individual behavior-type and oxygen metabolism7
Editorial Board7
Chromosome-level genome assembly of the European flat oyster (Ostrea edulis) provides insights into its evolution and adaptation7
On characterizing the Red-headed Krait (Bungarus flaviceps) venom: Decomplexation proteomics, immunoreactivity and toxicity cross-neutralization by hetero-specific antivenoms7
Transcriptome analysis reveals key genes and pathways related to sex differentiation in the Chinese soft-shelled turtle (Pelodiscus sinensis)7
Characterization and expression profiling of G protein-coupled receptors (GPCRs) in Spodoptera litura (Lepidoptera: Noctuidae)7
Proteomics analysis of differentially abundant proteins in the rohu kidney infected with Edwardsiella tarda7
Comparative transcriptome analysis provides comprehensive insight into the molecular mechanisms of heat adaption in Plutella xylostella6
Integration of transcriptome and whole-genome re-sequencing analyses reveal growth-related candidate genes in Procambarus clarkii6
Characterizing the origin of blood plasma proteins from organ tissues in rainbow trout (Oncorhynchus mykiss) using a comparative non-targeted proteomics approach6
An analysis combining proteomics and transcriptomics revealed a regulation target of sea cucumber autolysis6
The multi-omics analysis in the hepatopancreas of Eriocheir sinensis provides novel insights into the response mechanism of heat stress6
Transcriptomic profiling of Rana [Lithobates] catesbeiana back skin during natural and thyroid hormone-induced metamorphosis under different temperature regimes with particular emphasis on innate immu6
Genome-wide identification and expression profiles of sex-related gene families in the Pacific abalone Haliotis discus hannai6
Decreased acetylation of HDGF improves oviduct production in Rana dybowskii, Rana amurensis, and Rana huanrenensis6
The tricarboxylic acid cycle is inhibited under acute stress from carbonate alkalinity in the gills of Eriocheir sinensis6
Integrative analysis of metagenome and metabolome provides new insights into intestinal health protection in Coilia nasus larvae via probiotic intervention6
Effects of myo-inositol on growth and biomarkers of environmental stress and metabolic regulation in Pacific white shrimp (Litopenaeus vannamei) reared at low salinity6
Gastrointestinal dysbiosis induced by Nocardia sp. infection in tilapia6
The hypoxia response pathway in the Antarctic fish Notothenia coriiceps is functional despite a poly Q/E insertion mutation in HIF-1α6
Fatter or stronger: Resource allocation strategy and the underlying metabolic mechanisms in amphibian tadpoles5
Revealing the adaptation mechanism of different color morphs of sea cucumber Apostichopus japonicus to light intensities from the perspective of metabolomics5
Combined metabolomics and histological analysis of the tissues from cuttlefish Sepia pharaonis exposed to inking stress5
Transcriptomic analysis of mRNA and miRNA reveals new insights into the regulatory mechanisms of Anadara granosa responses to heat stress5
Genome-wide annotation and comparative analysis revealed conserved cuticular protein evolution among non-biting midges with varied environmental adaptability5
Transcriptome and exosome proteome analyses provide insights into the mantle exosome involved in nacre color formation of pearl oyster Pinctada fucata martensii5
The mantle exosome proteins of Hyriopsis cumingii participate in shell and nacre color formation5
Neuronal cell populations in circumoral nerve ring of sea cucumber Apostichopus japonicus: Ultrastructure and transcriptional profile5
Neighbours matter: Effects of genomic organization on gene expression plasticity in response to environmental stresses during biological invasions5
Metabonomics of white adipose tissue and brown adipose tissue in Tupaia belangeri during cold acclimation5
Transcriptomic and metabolomic analyses reveal sex-related differences in the gonads of Pinctada fucata martensii5
The influence of hypoxia on the cardiac transcriptomes of two estuarine species - C. variegatus and F. grandis5
Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum5
Transcriptome and metabolome analyses reveal gender-specific expression genes in sea cucumber (Holothuria leucospilota)5
Analysis of NGS data from Peruvian Loxosceles laeta spider venom gland reveals toxin diversity5
Effects of chronic high-temperature stress on muscle tissue integrity and metabolism-related genes in Clarias fuscus5
Transcriptome and functional responses to absence of astaxanthin in Atlantic salmon fed low marine diets5
Integration of metagenome and metabolome analysis reveals the correlation of gut microbiota, oxidative stress, and inflammation in Coilia nasus under air exposure stress and salinity mitigation5
Identification of putative key genes for thermal adaptation in the Japanese mantis shrimp (Oratosquilla oratoria) through population genomic analysis5
Liver transcriptome and proteome are modulated by nutrient restriction in early lactation cows challenged with intramammary lipopolysaccharide5
Comparative analysis of bile acid composition and metabolism in the liver of Bufo gargarizans aquatic larvae and terrestrial adults5
Transcriptomic and histologic analyses preliminarily reveal the immune-metabolic response mechanism to saline-alkaline in large yellow croaker (Larimichthys crocea)5
Diploid and triploid Chinook salmon (Oncorhynchus tshawytscha) have altered microRNA responses in immune tissues after infection with Vibrio anguillarum5
Phosphoproteomics changes due to allograft-induced stress responses of Pinctada fucata martensii5
Diapause differentially modulates the transcriptomes of fat body and flight muscle in the Colorado potato beetle5
A comprehensive analysis of hepatopancreas metabolomics and transcriptomics provides insights into the growth of three-year-old crabs (Eriocheir sinensis) under low temperature5
Gill physiological and transcriptomic response of the threatened freshwater mussel Solenaia oleivora to salinity shift5
Effect of selenium nanoparticles on alternative splicing in heat-stressed rainbow trout primary hepatocytes5
Integrative mRNA-miRNA interaction analysis reveals the molecular mechanism of skin color variation between wild-type and yellow mutant rainbow trout (Oncorhynchus mykiss)4
Single-cell RNA sequencing offers opportunities to explore the depth of physiology, adaptation, and biochemistry in non-model organisms exposed to pollution4
Transcriptomics-based analysis of Macrobrachium rosenbergii growth retardation4
A comprehensive overview of ovarian small non-coding RNAs in the late overwintering and breeding periods of Onychostoma macrolepis4
Genome-wide characterization of integrin (ITG) gene family and their expression profiling in half-smooth tongue sole (Cynoglossus semilaevis) upon Vibrio anguillarum infection4
Behavioral and hypothalamic transcriptome analyses reveal sex-specific responses to phenanthrene exposure in the fathead minnow (Pimephales promelas)4
Editorial Board4
Identification and sex expression profiles of candidate chemosensory genes from Atherigona orientalis via the antennae and leg transcriptome analysis4
Exosomes serve as a crucial mediator of epithelial–fibroblast communication during hair follicle morphogenesis in cashmere goats4
Metabolomics and microbiome co-analysis reveals altered innate immune responses in Charybdis japonica following Aeromonas hydrophila infection4
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Genome-wide association study (GWAS) analysis of black color trait in the leopard coral grouper (Plectropomus leopardus) using whole genome resequencing4
Recent insights from comparative animal microbiomics4
Comparative skin histological and transcriptomic analysis of Rana kukunoris with two different skin colors4
Transcriptome analysis provides insights into the molecular mechanism of liver inflammation and apoptosis in juvenile largemouth bass Micropterus salmoides fed low protein high starch diets4
Dietary Lithospermum erythrorhizon ethanol extract alleviates soybean meal-induced enteritis by improving immune tolerance profile of pearl gentian grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatu4
Transcriptome analysis and screening of putative sex-determining genes in the invasive pest, Frankliniella occidentalis (Thysanoptera: Thripidae)4
Changes in the liver of Tinca tinca under successive domestication using an integrated multi-omics approach4
Analyses of regulatory network and discovery of potential biomarkers for Korean rockfish (Sebastes schlegelii) in responses to starvation stress through transcriptome and metabolome4
Transcriptome analysis reveals candidate miRNAs involved in skin color differentiation of juvenile Plectropomus leopardus in response to different background colors4
Circulating exosome miRNA, is it the novel nutrient molecule through cross-kingdom regulation mediated by food chain transmission from microalgae to bivalve?3
The genome of the freshwater monogonont rotifer Brachionus angularis: Identification of phase I, II, and III detoxification genes and their roles in molecular ecotoxicology3
Identification and expression characteristics of putative chemosensory proteins in the peach fruit borer Carposina sasakii Matsumura (Lepidoptera: Carposinidae)3
Human type 2 diabetes mellitus-associated transcriptional disturbances in a high-sugar diet long-term exposed Drosophila melanogaster3
Transcriptome sequencing reveals ovarian immune response and development during female sperm storage in viviparous black rockfish (Sebastes schlegelii)3
Transcriptomic analysis reveals PC4's participation in thermotolerance of scallop Argopecten irradians irradians by regulating myocardial bioelectric activity3
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)3
Deficiency of interleukin-17 receptor A1 induces microbiota disruption in the intestine of Japanese medaka, Oryzias latipes3
Comparative transcriptome analysis of gonads in male and female Pseudobagrus ussuriensis (Bagridae, Siluriformes)3
Transcriptome analysis reveals roles of polian vesicle in sea cucumber Apostichopus japonicus response to Vibrio splendidus infection3
The effects of sustained and diel-cycling hypoxia on high-latitude fish Phoxinus lagowskii3
Construction and integrative analysis of miRNA-mRNA response to salinity stress in Oreochromis mossambicus cells3
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint3
Changes in the gut bacterial community affect miRNA profiles in Riptortus pedestris under different rearing conditions3
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum3
Comparative mitogenomic analyses of the infraclass Pteriomorphia (Mollusca: Bivalvia) provides novel insights into gene rearrangement and phylogeny3
The effects of sulfate on the physiology, biochemistry, and intestinal transcriptome of Scylla paramamosain under low-salinity conditions3
Apoptosis, MAPK signaling pathway affected in tilapia liver following nano-microplastics and sulfamethoxazole acute co-exposure3
Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance3
FHL3 gene regulates bovine skeletal muscle cell growth through the PI3K/Akt/mTOR signaling pathway3
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition3
Transcriptome profiles of the skin associated with the color of the black and white coat of Angora goats3
Identification and analysis of olfactory genes in Dioryctria abietella based on the antennal transcriptome3
Transcriptome analysis revealed multiple immune processes and energy metabolism pathways involved in the defense response of the large yellow croaker Larimichthys crocea against Pseudomonas plecogloss3
Evolutionary origin and distribution of leucine-rich repeat-containing G protein-coupled receptors in insects3
Short- and medium-term exposures of diazepam induce metabolomic alterations associated with the serotonergic, dopaminergic, adrenergic and aspartic acid neurotransmitter systems in zebrafish (Danio re3
Transcriptome-based analyses reveal venom diversity in two araneomorph spiders, Psechrus triangulus and Hippasa lycosina3
Comparative transcriptome elucidates key genes and pathways related to golden phenotype of Crassostrea gigas3
The effects of bisphenol A on liver proteome and mucus vitellogenin in comparison to plasma as a non-invasive biomarker in immature Siberian sturgeons (Acipenser baerii)3
RNA-seq analysis of gene expression changes in cuticles during the larval-pupal metamorphosis of Plutella xylostella3
Coordinated transcriptomics and peptidomics of central nervous system identify neuropeptides and their G protein-coupled receptors in the oriental fruit moth Grapholita molesta3
Cytochrome P450 superfamily in spotted sea bass: Genome-wide identification and expression profiles under trichlorfon and environmental stresses3
The genome of the freshwater monogonont rotifer Brachionus rubens: Identification of phase I, II, and III detoxification genes3
Transcriptome analysis provides insights into long noncoding RNAs in medaka gonads3
Genome-wide identification and expression profiling of the hemoglobin gene family under hypoxia stress in Sillago sihama3
Neurotoxins in the venom gland of Calommata signata, a burrowing spider3
Genome-wide identification and expression profiling of glutathione S-transferase family under hypoxia stress in silver sillago (Sillago sihama)3
Transcriptomic insight into the hybridization mechanism of the Tambacu, a hybrid from Colossoma macropomum (Tambaqui) and Piaractus mesopotamicus (Pacu)3
Proteomic analysis of hepatic fibrosis induced by a high starch diet in largemouth bass (Micropterus salmoides)3
Transcriptomic analysis of sexually dimorphic cypris larvae of the rhizocephalan barnacle Peltogasterella gracilis3
Comparative transcriptome analysis of different developmental stage of Bactrocera minax (Diptera: Tephritidae): Implication of the molecular basis of its obligatory diapause induction3
Multi-omics reveals the ecological and biological functions of Enterococcus mundtii in the intestine of lepidopteran insects3
Integrated analysis of transcriptome and metabolome reveals chronic low salinity stress responses in the muscle of Exopalaemon carinicauda3
The gut content microbiome of wild-caught rainbow darter is altered during laboratory acclimation3
Environmental enrichment during early rearing provokes epigenetic changes in the brain of a salmonid fish3
Proteomic analysis revealed gender-related differences in the skin mucus proteome of discus fish (Symphysodon haraldi) during the parental and non-parental care periods3
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