Comparative Biochemistry and Physiology D-Genomics & Proteomics

Article	Citations
Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in cobia (Rachycentron canadum) scales under hypoosmotic adaption	25
Joint profiling of DNA methylomics and transcriptomic reveals roles of demethylation in regeneration of coelomocytes after evisceration in sea cucumber Apostichopus japonicus	24
Identification of microRNAs from juvenile greater amberjack (Seriola dumerili) in response to marine heatwaves	16
Transcriptomics, antioxidant enzyme activities, and immune-associated parameter analysis reveal the molecular responses of rainbow trout (Oncorhynchus mykiss) to transportation stress	16
Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems	13
Roles and occurrences of microbiota in the osmoregulatory organs, gills and gut, in marine medaka upon hypotonic stress	13
Biochemical indices, histological observations and transcriptome sequencing reveal the response mechanism of largemouth bass (Micropterus salmoides) to transport stress	13
Identification of genes expressed in the pectoral fins and skin of Takifugu rubripes to reveal candidate genes involved in host recognition by the crustacean ectoparasite Caligus fugu	12
Papillae growth and molecular responses in sea cucumber (Apostichopus japonicus) exposed to light spectra	12
On characterizing the Red-headed Krait (Bungarus flaviceps) venom: Decomplexation proteomics, immunoreactivity and toxicity cross-neutralization by hetero-specific antivenoms	11
The effects of different MT treatment methods on the ovarian transcriptome of Pampus argenteus	11
Identification and expression of transient receptor potential (TRP) genes in Urechis unicinctus and the role of TRPC5 in immune response	11
20-Hydroxyecdysone promotes fat body lipolysis through autophagy during pupation in Apis mellifera	10
Population-specific phenotypic plasticity of endangered bivalves in response to extreme events	10
Silymarin mediates the gut-liver axis pathway to alleviate Carassius auratus hepatic lipid metabolism disorders caused by carbonate exposure	10
Chromosome-level genome assembly of the marine medaka (Oryzias melastigma) using Hi-C technology: Genomic analysis and profiling of DNA methylation for epigenetic study	10
Comparative transcriptome analysis of juvenile greater amberjack (Seriola dumerili) revealed the molecular responses of the kidney to chronic salinity stress	10
Transcriptome analysis and screening of putative sex-determining genes in the invasive pest, Frankliniella occidentalis (Thysanoptera: Thripidae)	9
Transcriptomic analysis unveils critical genes governing early development and sex differentiation in the Cipangopaludina chinensis (Gastropoda: Viviparidae)	9
Diet-driven transcriptional changes in weaning red abalone (Haliotis rufescens) and its hybrid (H. rufescens [♀] x H. fulgens [♂])	9
Gastrointestinal dysbiosis induced by Nocardia sp. infection in tilapia	9
Comparative miRNA transcriptome analysis reveals miR-375-3p targets cyp19a and regulates ovarian development in Medaka (Oryzias latipes)	9
Deciphering multi-organ protein regulatory strategies in the Asian frog, Pelophylax nigromaculatus during hibernation to elucidate energy homeostasis maintenance mechanisms	9
Skin mucus proteomic provides insights into the alkaline tolerance of grass carp (Ctenopharyngodon idella)	8
Transcriptomics reveals the temporal responses of sea cucumber (Apostichopus japonicus) to the challenge by bacterial peptidoglycans	8

Diploid and triploid Chinook salmon (Oncorhynchus tshawytscha) have altered microRNA responses in immune tissues after infection with Vibrio anguillarum	8
Integrated multi-omics analyses reveals physiological and gut microbiota responses of Litopenaeus vannamei to graded levels of dietary bile acids	8
Sex-bias of core intestinal microbiota in different stocks of Chinese mitten crabs (Eriocheir sinensis)	8
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition	8
Harnessing genomics for identifying disease-resistant eels: Advances, applications, and sustainable aquaculture	8
Metabolomics and microbiome co-analysis reveals altered innate immune responses in Charybdis japonica following Aeromonas hydrophila infection	8
Transcriptional atlas of Daphnia magna	8
Effects of Spirulina platensis as a substitute for fishmeal on the liver of zig-zag eel (Mastacembelus armatus) infected with Aeromonas hydrophila	8
Comprehensive transcriptome analysis of somatic and gonadal tissues for identification of sex-biased genes in spotted scat (Scatophagus argus)	8
Comparative transcriptome analysis reveals molecular mechanism of temperature effect on body color of red swamp crayfish (Procambarus clarkii)	8
Transcriptomic and proteomic insights into the growth-promoting mechanisms of dietary γ-aminobutyric acid (GABA) in tawny puffer (Takifugu flavidus)	8
A novel indel-based molecular sex identification system for oplegnathus fasciatus: Insights from ndc80 gene polymorphisms and aquaculture applications	7
Short-term and persistent changes to the muscle transcriptome of Lake sturgeon (Acipenser fulvescens) following early-life exposures to elevated temperatures	7
Transcriptomic analysis reveals the survival strategies of Mytilus coruscus under short-term rising seawater temperatures	7
Heat stress induces pathological and molecular responses in the gills of largemouth bass (Micropterus salmoides) revealed by histology, transcriptomics, and DNA methylomics	7
Multi-omics analysis reveals the cerebral sex-specific responses to chronic hypoxia in yellow catfish (Pelteobagrus fulvidraco)	7
Transcriptomic analysis reveals stage-specific cholesterol metabolism and steroidogenic in theca layer cells during follicular development in chickens	7
Key lncRNA-mRNA networks regulated by Polyascus sp. infection: A comparative transcriptomic analysis of the eyestalk in the Eriocheir sinensis	7
Transcriptome analysis reveals the potential mechanism of plateau environment on muscle growth and development in yak	7
Quercetin enhances antioxidant capacity and reproductive performance in daphnia pulex	7
Transcriptomic signatures associated with developmental transitions in the gill of lake sturgeon (Acipenser fulvescens)	7
Evolution of the sex-determination gene Doublesex within the termite lineage	7
Genome-wide analysis reveals the evolutionary history of TAG intracellular lipases and their roles in different molting stages of Decapods	6
Editorial Board	6
Transcriptomic impacts and potential routes of detoxification in a lampricide-tolerant teleost exposed to TFM and niclosamide	6
Integrated transcriptomic and proteomic analysis of hepatopancreatic pathological changes in Eriocheir sinensis affected by hepatopancreatic necrosis disease	6
Peptidomic analysis of the host-defense peptides in skin secretions of the Amazon River frog Lithobates palmipes (Ranidae)	6
Metabonomic and microbiomic analysis reveals the effect of sargassum enzyme hydrolysate compound fish protein hydrolysate on the intestinal health in Pacific white shrimp (Penaeus vannamei)	6
De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi	6
Beyond opioid and SNRI-like actions: Proteomic insights into the effects of tramadol and O-desmethyltramadol in zebrafish larvae	6
Transcriptional and metabolomic investigation of the stress response in snow crab during simulated transport condition (Chionoecetes opilio)	6
Transcriptome analysis and expression profiles of odorant binding proteins and chemosensory proteins in Orius sauteri	6
Comparative analysis of intestinal structure, enzyme activity, intestinal microbiota and gene expression in different segments of pufferfish (Takifugu Obscurus)	6
Molecular mechanisms of kidney-mediated salinity adaptation in Takifugu obscurus, T. rubripes and their hybrid offspring	6
Astral-based DIA proteomics explored the cold response mechanism in the liver of juvenile greenfin horse-faced filefish (Thamnaconus septentrionalis)	6
Identification of candidate leg chemosensory genes associated with nursing behavior in the Apis mellifera	6
Comparative transcriptome analysis reveals physiological responses in liver tissues of Epinephelus coioides under acute hypoxia stress	6
Transcriptomic WGCNA analyses reveal sectional regulatory mechanisms in giant freshwater prawn Macrobrachium rosenbergii larvae under hypoxia-reoxygenation	6
Transcriptome analysis reveals the immune response mechanism of golden cuttlefish (Sepia esculenta) larvae exposed to ink	6
Integrated multi-omics analysis and RNAi reveal Toll signaling pathway and melanization as key defenses in Ostrinia furnacalis against Meteorus pulchricornis parasitism	6
Functional verification of a landmark gene EVM713 involved in spermatogenesis in the marine bivalve Chlamys nobilis	6
Changes in transcriptome regulations of a marine rotifer Brachionus plicatilis under methylmercury stress	6
New insights into the role of solute carriers in response to salinity stress in the Manila clam (Ruditapes philippinarum)	6
Dietary steroids promote body weight growth and induce gametogenesis by increasing the expressions of genes related to cell proliferation of sea cucumber (Apostichopus japonicus)	6
Genome-wide analyses of Glutathione S-transferase gene family and expression profiling under deltamethrin exposure in non-biting midge Propsilocerus akamusi	6
Neuroendocrine transcriptomics in Eriocheir sinensis: Photoperiod-induced modulation of gonadal development and circadian clock genes in neural tissues	6
Alterations in captive Alexandrine parakeet (Palaeornis eupatria) gut microbiome and metabolome in response to dietary change	6
Transcriptomic analyses reveals a diverse venom composition in Agelena limbata (Araneae: Agelenaidae)	6
Transcriptomic analysis of the effect of dietary melatonin on liver immunity in rice field eel (Monopterus albus)	6
Editorial Board	5

Effects of low temperature air exposure and immersion on antioxidant, immune, intestinal flora and metabolome of Chinese mitten crab (Eriocheir sinensis)	5
Acute injury of liver in hybrid groupers (Epinephelus lanceolatus ♂ × Epinephelus fuscoguttatus ♀) under high-dose Edwardsiella ictaluri infection	5
Transcriptomic analysis of the gill and hepatopancreas reveals the thermal adaptation mechanisms of Eriocheir sinensis	5
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	5
Identification of the changes of immune response, morphology, and gene expressions in hepatopancreas of Macrobrachium nipponense under the treatment of alkalinity exposure	5
Weighted correlation network analysis of the genes in the eyes of juvenile Plectropomus leopardus provide novel insights into the molecular mechanisms of the adaptation to the background color	5
Transforming growth factor-beta gene family in Labeo rohita: Genome-wide molecular characterization and phylogenetic relationship with other vertebrates	5
Transcriptomic analysis of post-mating neural reprogramming and its coordinated control of ovarian development in the mud crab Scylla paramamosain	5
Identification of key lncRNAs and mRNAs in muscle development pathways of Tan sheep	5
Genome-wide identification and expression profiling of HSD3B and SDR42E1 genes in the Pacific oyster (Crassostrea gigas): potential associations with gonadal development	5
Identification and characterization of circadian clock genes in the head transcriptome of Conopomorpha sinensis Bradley	5
Genome-wide analyses of glutathione S-transferase gene family and expression profiling among three haplotypes Aphis gossypii	5
Molecular mechanisms of quercetin in regulating antioxidant defense and pyroptosis pathways in the redclaw crayfish (Cherax quadricarinatus)	5
Gene family expansion analysis and identification of the histone family in Spodoptera frugiperda	5
Key neuropeptide and neuroendocrine pathways of the optic lobe are affected by high temperatures in the female Octopus maya	5
Gonadal transcriptome profiling via RNA-seq during temperature-dependent sex determination and differentiation in the red-eared slider (Trachemys scripta elegans)	5
Identification of sex-related genes across bivalves reveals key genes in gonad development and sex reversal	5
Circular RNA transcriptome across various development periods of Paralichthys olivaceus reveal skeletal muscle-specific circchd6 regulating myogenesis	5
Genome-wide association analysis to identify novel candidate genes and genomic model optimization to predict acute low-temperature stress resilience in olive flounder (Paralichthys olivaceus)	5
Comparative transcriptome analysis reveals the different responding mechanisms of ovary and hepatopancreas following polyI:C challenge in Macrobrachium nipponense	5
Comparative transcriptome analysis reveals key genes and pathways related to gonad development in the sea cucumber Apostichopus japonicus	5
Effects of environmentally relevant concentrations of glyphosate and aminomethylphosphonic acid on biotransformation and stress response proteins in the liver of zebrafish (Danio rerio)	5
Effects of low salinity stress on the taurine metabolism and transport in the Iwagaki oyster Crassostrea nippona	5
Norgestrel drives mitochondrial collapse and plasma membrane impairment in Pacific oyster (Crassostrea gigas) sperm by triggering premature acrosome reaction	5
Response mechanisms of hepatopancreatic metabolism and gut microbiota in Chinese mitten crab (Eriocheir sinensis) under chronic high-pH stress	5
Estrone exposure-induced feminization in male Siniperca chuatsi: A multidimensional study on sex reversal, liver damage, and changes in gene expression	5
Investigating imidacloprid resistance in Amrasca biguttula biguttula (Ishida) (Hemiptera: Cicadellidae): Insights from RNA-Seq and functional validation using RT-qPCR	5
Comparative transcriptomics reveals the conservation and divergence of reproductive genes across three sympatric Tomicus bark beetles	5
Omics-driven insight into physiological responses of species in aquaculture	4
TMT-based proteomics analysis of sea urchin (Strongylocentrotus intermedius) under high temperature stress	4
The physiological and transcriptional differences between golden and brown noble scallops Chlamys nobilis	4
Profiling and functional validation of LPS-responsive miRNAs in the giant freshwater prawn, Macrobrachium rosenbergii	4
Decreased acetylation of HDGF improves oviduct production in Rana dybowskii, Rana amurensis, and Rana huanrenensis	4
Changes in the gut bacterial community affect miRNA profiles in Riptortus pedestris under different rearing conditions	4
Comparative analysis of different Phyllostachys species on gut microbiome and fecal metabolome in giant pandas (Ailuropoda melanoleuca)	4
Preliminary analysis of pathways and their implications during salinity stress in abalone	4
Editorial Board	4
Comparative proteomics elucidates the potential mechanism of heritable carapace color of three strains Chinese mitten crab Eriocheir sinensis	4
Investigating the lipid profile of Anopheles stephensi mosquitoes across developmental life stages	4
The toggle switch model for gene expression change during duck skeletal muscle development	4
Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine	4
Dietary supplementation of selenium nanoparticle improves the vitellogenesis and fecundity of female zebrafish	4
Integrative analysis of transcriptomics and gut microbiome in grass carp under alkalinity stress	4
Comparative skin histological and transcriptomic analysis of Rana kukunoris with two different skin colors	4
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	4
Integrative analysis of FOX genes in fish: Evolution, structure, and functional roles in environmental stress tolerance and growth regulation in Mugil cephalus	4
Effects of myo-inositol on growth and biomarkers of environmental stress and metabolic regulation in Pacific white shrimp (Litopenaeus vannamei) reared at low salinity	4
Comparative transcriptome analysis for identifying genes involved in reproduction of banana shrimp (Penaeus merguiensis)	4
MicroRNA-mediated regulation in anoxic Lithobates sylvaticus liver	4
The dynamic transcriptomic response of the goldfish brain under chronic hypoxia	4
Genome-wide identification and expression profiles of sex-related gene families in the Pacific abalone Haliotis discus hannai	4
Transcriptome variation in banded newt (Ommatotriton vittatus) during its life cycle and habitat transition	4
The energy metabolism and transcriptomic responses of the Manila clam (Ruditapes philippinarum) under the low-temperature stress	4
Multomics decipher the mechanisms of bisphenol S-induced oxidative stress and inflammation in Pseudobagrus ussuriensis	4
Lipid droplets play versatile roles in ovarian development of the razor clam Sinonovacula constricta: Insights from proteomic and lipidomic analyses	4
Incorporation of microgastropoda species provides novel insights into phylogeny of Trochoidea (Gastropoda: Vetigastropoda)	4
Editorial Board	4
Transcriptome analysis reveals intestinal gene expression and metabolic pathways in yaks	4
Association analysis reveals SNP markers associated with growth traits in swimming crabs (Portunus trituberculatus)	4
The tricarboxylic acid cycle is inhibited under acute stress from carbonate alkalinity in the gills of Eriocheir sinensis	4
Transcriptome analysis and exploration of immune key genes of hepatopancreas after Poly(I:C) stimulation in Amphioctopus fangsiao	4
Using proteomics, q-PCR and biochemical methods complementing as a multiapproach to elicit the crucial responses of zebrafish liver exposed to neonicotinoid pesticide	3
Functional insights of digestion, absorption, and immunity in different segments of the intestine in Hemibarbus labeo from transcriptomic analysis	3
Proteomic analysis reveals immune-related proteins of coelomic fluid in Urechis unicinctus	3
Pyraclostrobin-induced toxic effects in the gills of common carp (Cyprinus carpio L.): Mechanisms unveiled through biochemical, molecular, and metabolomic analyses	3
Liver transcriptome analysis reveals genes and pathways involved in the ovarian development in spotted scat (Scatophagus argus)	3
Multi-organ transcriptomics provide insights into growth regulation in the Dongtingking crucian carp (Carassius auratus indigentiaus)	3
High levels of sinigrin trigger synthesis of fatty acids in Plutella xylostella (L.)	3
Molecular responses of paddy field carp (Cyprinus carpio) in the agricultural heritage to major environmental factors in paddy fields	3
Transcriptome analysis reveals molecular mechanism of Dosinia corrugata in response to acute heat stress	3
Transcriptomics reveals different response mechanisms of Litopenaeus vannamei hemocytes to injection of Vibrio parahaemolyticus and WSSV	3
miR-182-5p affects melanin formation in Crassostrea gigas by regulating the MITF gene	3
Comparative identification, characterization and high-temperature stress analysis of the fatty acid-binding protein (fabp) genes in largemouth bass (Micropterus salmoides) genome	3
Comparative metabolomic analysis reveals sex differences and heat stress responses in germ cells of Sipunculus nudus	3
Apoptosis, MAPK signaling pathway affected in tilapia liver following nano-microplastics and sulfamethoxazole acute co-exposure	3
Whole-genome identification of SOD gene family revealed the expansion of SOD in Chinese mitten crab, Eriocheir sinensis	3
Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress	3
Expression analysis of alpha keratins and corneous beta-protein genes during embryonic development of Gekko japonicus	3
Post-prandial response in hepatopancreas and haemolymph of Penaeus monodon fed different diets. Omics insights into glycoconjugate metabolism, energy utilisation, chitin biosynthesis, immune function,	3
The haplotype-resolved chromosome-level genome assembly of Spinibarbus caldwelli provides insights into environmental adaptability and disease resistance	3

Transcriptomic profiling reveals the mechanisms underlying growth divergence in Apostichopus japonicus	3
Identification of sex-specific splicing via comparative transcriptome analysis of gonads from sea cucumber Apostichopus japonicus	3
Transcriptomic evidence indicates that montane leaf beetles prioritize digestion and reproduction in a sex-specific manner during emergence from dormancy	3
Exploring symbiont gene expression in two echinoid-associated shrimp species under host separation	3
Genome-wide identification, docking and expression analysis of ATP-binding cassette gene family of Parnara guttata, a major rice pest (Insecta: Lepidoptera: Hesperiidae)	3
Comprehensive analysis of lncRNA and mRNA expression in triploid rainbow trout (Oncorhynchus mykiss) liver in response to chronic hypoxia	3
Transcriptome analysis of the moso bamboo pest, Hippotiscus dorsalis, reveals differentially expressed unigenes across various tissues	3
Changes in histone abundance and post-translational modifications in Rana [Lithobates] catesbeiana tissues during temperature-mediated thyroid hormone-induced metamorphosis	3
Genome-wide analysis of the cytochrome P450 gene family in Pacific oyster Crassostrea gigas and their expression profiles during gonad development	3
Investigating the molecular basis of cleptobiosis in eusocial stingless bees (Apidae: Hymenoptera)	3
Regulation mechanism of endochondral ossification in Rana zhenhaiensis during metamorphosis based on histomorphology and transcriptome analyses	3
Effects of temperature on metamorphosis and endochondral ossification in Rana chensinensis tadpoles	3
Comparative transcriptomics identifies key genes and pathways underlying the early skin coloration in leopard coral grouper (Plectropomus leopardus)	3
An integrated transcriptome, proteome and targeted metabolome analysis reveals genes and steroids related to gonadal development in Ruditapes philippinarum	3
Proteomic responses to progressive dehydration and rehydration in Xenopus laevis	3
Comparative transcriptomic analysis across ovarian developmental stages in Sepiella japonica provides novel insights into its molecular regulatory mechanisms	3
Proteomic analysis of hepatic fibrosis induced by a high starch diet in largemouth bass (Micropterus salmoides)	3
Transcriptome profiling of triploid Crassostrea gigas gills indicates the host immune mechanism against bacterial infection	3
Effects of replacing fishmeal with different proportions of mixed protein source in the diet of largemouth bass (Micropterus salmoides)	3
Identification of hub genes in digestive system of mandarin fish (Siniperca chuatsi) fed with artificial diet by weighted gene co-expression network analysis	3
Comprehensive analysis of small non-coding RNAs in the liver of Onychostoma macrolepis during overwintering and non-overwintering periods provides insights into the metabolic mechanisms of fish overwi	3
Comparative mitogenomic analyses of the infraclass Pteriomorphia (Mollusca: Bivalvia) provides novel insights into gene rearrangement and phylogeny	3
Identification of key overlapping DEGs and molecular pathways under multiple stressors in the liver of Nile tilapia (Oreochromis niloticus)	3
Liquid chromatography-mass spectrometry based metabolomics investigation of different tissues of Mytilus galloprovincialis	3
Exosomes serve as a crucial mediator of epithelial–fibroblast communication during hair follicle morphogenesis in cashmere goats	3
Comparative transcriptome analysis reveals molecular mechanisms of the effects of light intensity and photoperiod on ovarian development in Procambarus clarkii (Girard, 1852)	3
Combined transcriptome and metabolome analysis reveals the mechanism of high nitrite tolerance in freshwater mussel Anodonta woodiana	3
Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): Proteomic changes across reproductive stages	3
Microgeographic variation in gene expression plasticity under osmotic stress in wild eastern oyster juveniles (Crassostrea virginica)	3
Comprehensive analysis of Sox genes in the Pacific oyster (Crassostrea gigas): Insights into expression and potential functions	3
Integrated transcriptomic and lipidomic analysis reveals that arachidonic acid mediates the allograft-induced stress response in Pinctada fucata martensii	3
Insights into sequence characteristics and evolutionary history of DGATs in arthropods	3
Effects of low temperature on intestinal microbiota composition of silver pomfret (Pampus argenteus)	3
Comparative analysis of gut microbiota-mediated bile acid profiles in Bufo gargarizans and Rana chensinensis tadpoles	3
Toxic effects of trichlorfon on the hepatopancreas of Chinese mitten crab (Eriocheir sinensis): Tissue damage, oxidative stress, and Ferroptosis	3
Transcriptome analysis and machine learning methods reveal potential mechanisms of zebrafish muscle aging	3
Transcriptome analyses reveal differentially expressed genes associated with development of the palatal organ in bighead carp (Hypophthalmichthys nobilis)	3
Transcriptomic and metabolomic analyses provide insights into the energy metabolism and signaling regulation of byssus secretion in winged pearl oyster Pteria penguin	3
Transcriptomic insights into vibrio-induced mortality in the clam Meretrix petechialis under high temperature	3
Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure	3
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum	3
Synergistic integration of transcriptomics and metabolomics analyses provides novel insights into the mechanisms underlying unsynchronized growth of greater amberjack (Seriola dumerili)	3
Cys-loop ligand-gated ion channel superfamily of Pardosa pseudoannulata: Implication for natural enemy safety	3
Integrated gut microbiota and multi-omics analysis revealed the growth differences of female giant freshwater prawn (Macrobrachium rosenbergii)	3