Comparative Biochemistry and Physiology D-Genomics & Proteomics

Papers
(The TQCC of Comparative Biochemistry and Physiology D-Genomics & Proteomics is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-02-01 to 2024-02-01.)
ArticleCitations
Ecotoxicoproteomic assessment of microplastics and plastic additives in aquatic organisms: A review30
Transcriptome analysis and weighted gene co-expression network reveals potential genes responses to heat stress in turbot Scophthalmus maximus28
Transcriptome analysis of grass carp (Ctenopharyngodon idella) between fast- and slow-growing fish26
Impact of polyethylene on salivary glands proteome in Galleria melonella21
Analysis of testis metabolome and transcriptome from the oriental river prawn (Macrobrachium nipponense) in response to different temperatures and illumination times20
Transcriptome changes for Nile tilapia (Oreochromis niloticus) in response to alkalinity stress19
Shotgun proteomics analysis reveals sub-lethal effects in Daphnia magna exposed to cell-bound microcystins produced by Microcystis aeruginosa17
Integrative microRNA and mRNA analysis reveals regulation of ER stress in the Pacific white shrimp Litopenaeus vannamei under acute cold stress17
Deiminated proteins and extracellular vesicles - Novel serum biomarkers in whales and orca16
Identification and phylogenetics of Spodoptera frugiperda chemosensory proteins based on antennal transcriptome data16
The first two complete mitogenomes of the order Apodida from deep-sea chemoautotrophic environments: New insights into the gene rearrangement, origin and evolution of the deep-sea sea cucumbers15
Imprinting statistically sound conclusions for gut microbiota in comparative animal studies: A case study with diet and teleost fishes15
Ecotoxico-lipidomics: An emerging concept to understand chemical-metabolic relationships in comparative fish models15
Transcriptome analysis reveals that high temperatures alter modes of lipid metabolism in juvenile turbot (Scophthalmus maximus) liver15
Acute air exposure modulates the microRNA abundance in stress responsive tissues and circulating extracellular vesicles in rainbow trout (Oncorhynchus mykiss)14
Transcriptome signatures in the brain of a migratory songbird13
Identification and sex-biased profiles of candidate olfactory genes in the antennal transcriptome of the parasitoid wasp Cotesia vestalis13
Chronic exposure to venlafaxine and increased water temperature reversibly alters microRNA in zebrafish gonads (Danio rerio)13
Integrated analysis of transcriptomic and metabolomic data to evaluate responses to hypersalinity stress in the gill of the razor clam (Sinonovacula constricta)13
Transcriptome analysis identifies candidate genes associated with skin color variation in Triplophysa siluroides12
Antennal transcriptome analysis and expression profiles of putative chemosensory soluble proteins in Histia rhodope Cramer (Lepidoptera: Zygaenidae)11
Transcriptome analysis reveals key genes and pathways associated with egg production in Nandan-Yao domestic chicken11
DNA methylation variation in the brain of laying hens in relation to differential behavioral patterns11
Identification of chemosensory genes by antennal transcriptome analysis and expression profiles of odorant-binding proteins in parasitoid wasp Aulacocentrum confusum11
Comparative transcriptome analysis provides novel insights into the molecular mechanism of the silver carp (Hypophthalmichthys molitrix) brain in response to hypoxia stress11
Transcriptome analysis of Liriomyza trifolii (Diptera: Agromyzidae) in response to temperature stress10
Transcriptome profiling reveal Acanthopanax senticosus improves growth performance, immunity and antioxidant capacity by regulating lipid metabolism in GIFT (Oreochromis niloticus)10
Metabolomic analysis of white, green and purple morphs of sea cucumber Apostichopus japonicus during body color pigmentation process10
Comparative transcriptome analysis reveals changes in gene expression in sea cucumber (Holothuria leucospilota) in response to acute temperature stress10
Comparative transcriptome analysis of Triplophysa yarkandensis in response to salinity and alkalinity stress10
Transcriptome analysis of liver provides insight into metabolic and translation changes under hypoxia and reoxygenation stress in silver sillago (Sillago sihama)10
Physiological parameters and gut microbiome associated with different dietary lipid levels in hybrid yellow catfish (Tachysurus fulvidraco♀× Pseudobagrus vachellii♂)9
Transcriptome analysis of golden pompano (Trachinotus ovatus) liver indicates a potential regulatory target involved in HUFA uptake and deposition9
Short- and medium-term exposures of diazepam induce metabolomic alterations associated with the serotonergic, dopaminergic, adrenergic and aspartic acid neurotransmitter systems in zebrafish (Danio re9
Early life stress causes persistent impacts on the microbiome of Atlantic salmon9
Are we forgetting the “proteomics” in multi-omics ecotoxicology?9
Identification and characterization of long noncoding RNAs provide insight into the regulation of gene expression in response to heat stress in rainbow trout (Oncorhynchus mykiss)9
Identification and analysis of olfactory genes in Dioryctria abietella based on the antennal transcriptome9
Combining of transcriptomic and proteomic data to mine immune-related genes and proteins in the liver of Cynoglossus semilaevis challenged with Vibrio anguillarum9
Transcriptomic responses to heat stress in gill and liver of endangered Brachymystax lenok tsinlingensis9
An improved genome assembly and annotation of the Antarctic copepod Tigriopus kingsejongensis and comparison of fatty acid metabolism between T. kingsejongensis and the temperate copepod T. japonicus9
Characterizing physical protein targets of chemical contaminants with chemical proteomics: Is it time to fill a crucial environmental toxicology knowledge gap?8
Transcriptomic analyses provide insights into the adaptive responses to heat stress in the ark shells, Scapharca subcrenata8
Physiological responses and molecular strategies in heart of silver carp (Hypophthalmichthys molitrix) under hypoxia and reoxygenation8
Investigation of growth retardation in Macrobrachium rosenbergii based on genetic/epigenetic variation and molt performance8
Genome-wide identification and transcriptome-based expression profiling of Wnt gene family in Ruditapes philippinarum8
Transcriptome reveals the important role of metabolic imbalances, immune disorders and apoptosis in the treatment of Procambarus clarkii at super high temperature8
Effects of moderate exercise on hepatic amino acid and fatty acid composition, liver transcriptome, and intestinal microbiota in channel catfish (Ictalurus punctatus)8
16S rRNA sequencing analysis of the correlation between the intestinal microbiota and body-mass of grass carp (Ctenopharyngodon idella)8
Study of the venom proteome of Vipera ammodytes ammodytes (Linnaeus, 1758): A qualitative overview, biochemical and biological profiling7
Identification and expression profiling of chemosensory membrane protein genes in Achelura yunnanensis (Lepidoptera: Zygaenidae)7
Transcriptome and functional responses to absence of astaxanthin in Atlantic salmon fed low marine diets7
Residual molecular and behavioral effects of the phenylpyrazole pesticide fipronil in larval zebrafish (Danio rerio) following a pulse embryonic exposure7
Structure and function analysis of various brain subregions and pituitary in grass carp (Ctenopharyngodon idellus)7
Environmental salinity influences the branchial expression of TCR pathway related genes based on transcriptome of a catadromous fish7
The genome of the marine monogonont rotifer Brachionus rotundiformis and insight into species-specific detoxification components in Brachionus spp.7
Plastics in our water: Fish microbiomes at risk?6
SEM observation of early shell formation and expression of biomineralization-related genes during larval development in the pearl oyster Pinctada fucata6
Comparative transcriptomic assessment of the chemosensory receptor repertoire of Drosophila suzukii adult and larval olfactory organs6
Chromosome-level genome assembly of the European flat oyster (Ostrea edulis) provides insights into its evolution and adaptation6
Identification and expression of chemosensory receptor genes in the egg parasitoid Trissolcus basalis6
Transcriptome sequencing provides insights into the mechanism of hypoxia adaption in bighead carp (Hypophthalmichthys nobilis)6
Zebrafish miR-462-731 is required for digestive organ development6
Time-dependent biomolecular responses and bioaccumulation of perfluorooctane sulfonate (PFOS) in Daphnia magna6
CircRNA profiling reveals circ880 functions as miR-375-3p sponge in medaka gonads6
The genome of the freshwater monogonont rotifer Brachionus angularis: Identification of phase I, II, and III detoxification genes and their roles in molecular ecotoxicology6
Transcriptome analysis of hepatopancreas from different living states oriental river prawn (Macrobrachium nipponense) in response to hypoxia6
Meta-analysis of differentially-regulated hepatic microRNAs identifies candidate post-transcriptional regulation networks of intermediary metabolism in rainbow trout6
The genome of the minute marine rotifer Proales similis: Genome-wide identification of 401 G protein-coupled receptor (GPCR) genes6
Divergent metabolic responses to sex and reproduction in the sea cucumber Apostichopus japonicus6
Characterization of the intestinal digesta and mucosal microbiome of the grass carp (Ctenopharyngodon idella)6
Expected ocean warming conditions significantly alter the transcriptome of developing postlarval American lobsters (Homarus americanus): Implications for energetic trade-offs6
Effects of dietary icariin supplementation on the ovary development-related transcriptome of Chinese mitten crab (Eriocheir sinensis)6
Transcriptome analysis provides insights into long noncoding RNAs in medaka gonads6
Transcriptomic changes in the pea aphid, Acyrthosiphon pisum: Effects of the seasonal timer and photoperiod6
Comparative transcriptome analysis reveals metabolism transformation in Coilia nasus larvae during the mouth-open period6
Blubber proteome response to repeated ACTH administration in a wild marine mammal6
Transcriptomic analysis revealed gene expression profiles during the sex differentiation of Chinese tongue sole (Cynoglossus semilaevis)6
Analysis of the Glyphodes pyloalis larvae immune transcriptome in response to parasitization by its endoparasitoid, Aulacococentrum confusum5
Transcriptome analysis of gender-biased CYP genes in gonads of the sea cucumber Apostichopus japonicus5
Transcriptional changes revealed water acidification leads to the immune response and ovary maturation delay in the Chinese mitten crab Eriocheir sinensis5
Identification and comparative expression profiles of chemosensory genes in major chemoreception organs of a notorious pests, Laodelphax striatellus5
Integrative mRNA-miRNA interaction analysis reveals the molecular mechanism of skin color variation between wild-type and yellow mutant rainbow trout (Oncorhynchus mykiss)5
The gut content microbiome of wild-caught rainbow darter is altered during laboratory acclimation5
Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance5
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint5
A combination of genome-wide association study screening and SNaPshot for detecting sex-related SNPs and genes in Cynoglossus semilaevis5
Gill physiological and transcriptomic response of the threatened freshwater mussel Solenaia oleivora to salinity shift5
Transcriptome analysis of acute high temperature-responsive genes and pathways in Palaemon gravieri5
Comparative phylotranscriptomics reveals putative sex differentiating genes across eight diverse bivalve species5
Hypoxic responses in Oncorhynchus mykiss involve angiogenesis, lipid, and lactate metabolism, which may be triggered by the cortisol stress response and epigenetic methylation5
Genome-wide identification and structural analysis of heat shock protein gene families in the marine rotifer Brachionus spp.: Potential application in molecular ecotoxicology5
Snake venom proteomics and antivenomics of two Sundaic lance-headed pit vipers: Trimeresurus wiroti (Malaysia) and Trimeresurus puniceus (Indonesia)5
Identification and expression analysis of odorant binding proteins and chemosensory proteins from dissected antennae and mouthparts of the rice bug Leptocorisa acuta5
Comparative epigenetics in animal physiology: An emerging frontier5
Comparative microRNAs expression profiles analysis during embryonic development of common carp, Cyprinus carpio5
A new insight into the intestine of Pacific white shrimp: Regulation of intestinal homeostasis and regeneration in Litopenaeus vannamei during temperature fluctuation5
Transcriptome profiling revealed the growth superiority of hybrid pufferfish derived from Takifugu obscurus ♀ × Takifugu rubripes ♂5
The transcriptomic response of adult salmon lice (Lepeophtheirus salmonis) to reduced salinity5
Exposure to heat stress causes downregulation of immune response genes and weakens the disease resistance of Micropterus salmoides5
Comparative metabolomics analysis of ovarian developmental stages in Macrobrachium nipponense5
Transcriptome analysis revealed multiple immune processes and energy metabolism pathways involved in the defense response of the large yellow croaker Larimichthys crocea against Pseudomonas plecogloss5
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)5
Transcriptome analysis reveals roles of polian vesicle in sea cucumber Apostichopus japonicus response to Vibrio splendidus infection5
Metabonomics of white adipose tissue and brown adipose tissue in Tupaia belangeri during cold acclimation5
Comparative proteomics elucidates the dynamics of ovarian development in the Chinese mitten crab Eriocheir sinensis5
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