Comparative Biochemistry and Physiology D-Genomics & Proteomics

Article	Citations
The effects of different MT treatment methods on the ovarian transcriptome of Pampus argenteus	19
Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in cobia (Rachycentron canadum) scales under hypoosmotic adaption	19
Gastrointestinal dysbiosis induced by Nocardia sp. infection in tilapia	19
Multi-omics reveals the molecular mechanism of muscle quality changes in common carp (Cyprinus carpio) under two aquaculture systems	14
Papillae growth and molecular responses in sea cucumber (Apostichopus japonicus) exposed to light spectra	14
Roles and occurrences of microbiota in the osmoregulatory organs, gills and gut, in marine medaka upon hypotonic stress	14
Transcriptomics, antioxidant enzyme activities, and immune-associated parameter analysis reveal the molecular responses of rainbow trout (Oncorhynchus mykiss) to transportation stress	14
Identification of microRNAs from juvenile greater amberjack (Seriola dumerili) in response to marine heatwaves	12
Biochemical indices, histological observations and transcriptome sequencing reveal the response mechanism of largemouth bass (Micropterus salmoides) to transport stress	12
Comparative transcriptome analysis of juvenile greater amberjack (Seriola dumerili) revealed the molecular responses of the kidney to chronic salinity stress	11
Chromosome-level genome assembly of the marine medaka (Oryzias melastigma) using Hi-C technology: Genomic analysis and profiling of DNA methylation for epigenetic study	11
Silymarin mediates the gut-liver axis pathway to alleviate Carassius auratus hepatic lipid metabolism disorders caused by carbonate exposure	10
Transcriptomic analysis unveils critical genes governing early development and sex differentiation in the Cipangopaludina chinensis (Gastropoda: Viviparidae)	10
Comparative proteomic analysis of spleen reveals key immune-related proteins in the yak (Bos grunniens) at different growth stages	10
On characterizing the Red-headed Krait (Bungarus flaviceps) venom: Decomplexation proteomics, immunoreactivity and toxicity cross-neutralization by hetero-specific antivenoms	10
Metabolomics and microbiome co-analysis reveals altered innate immune responses in Charybdis japonica following Aeromonas hydrophila infection	9
Deciphering multi-organ protein regulatory strategies in the Asian frog, Pelophylax nigromaculatus during hibernation to elucidate energy homeostasis maintenance mechanisms	9
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition	9
Skin mucus proteomic provides insights into the alkaline tolerance of grass carp (Ctenopharyngodon idella)	9
Transcriptome analysis and screening of putative sex-determining genes in the invasive pest, Frankliniella occidentalis (Thysanoptera: Thripidae)	9
Diet-driven transcriptional changes in weaning red abalone (Haliotis rufescens) and its hybrid (H. rufescens [♀] x H. fulgens [♂])	9
Joint profiling of DNA methylomics and transcriptomic reveals roles of demethylation in regeneration of coelomocytes after evisceration in sea cucumber Apostichopus japonicus	9
Comparative miRNA transcriptome analysis reveals miR-375-3p targets cyp19a and regulates ovarian development in Medaka (Oryzias latipes)	9
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint	9
Transcriptome analysis reveals the potential mechanism of plateau environment on muscle growth and development in yak	8

Effects of Spirulina platensis as a substitute for fishmeal on the liver of zig-zag eel (Mastacembelus armatus) infected with Aeromonas hydrophila	8
Transcriptional atlas of Daphnia magna	8
Diploid and triploid Chinook salmon (Oncorhynchus tshawytscha) have altered microRNA responses in immune tissues after infection with Vibrio anguillarum	8
Multi-omics analysis reveals the cerebral sex-specific responses to chronic hypoxia in yellow catfish (Pelteobagrus fulvidraco)	8
Quercetin enhances antioxidant capacity and reproductive performance in daphnia pulex	7
Genome-wide analyses of Glutathione S-transferase gene family and expression profiling under deltamethrin exposure in non-biting midge Propsilocerus akamusi	7
Metabonomic and microbiomic analysis reveals the effect of sargassum enzyme hydrolysate compound fish protein hydrolysate on the intestinal health in Pacific white shrimp (Penaeus vannamei)	7
Alterations in captive Alexandrine parakeet (Palaeornis eupatria) gut microbiome and metabolome in response to dietary change	7
Transcriptomic analyses reveals a diverse venom composition in Agelena limbata (Araneae: Agelenaidae)	7
Transcriptomic and proteomic insights into the growth-promoting mechanisms of dietary γ-aminobutyric acid (GABA) in tawny puffer (Takifugu flavidus)	7
Heat stress induces pathological and molecular responses in the gills of largemouth bass (Micropterus salmoides) revealed by histology, transcriptomics, and DNA methylomics	7
Evolution of the sex-determination gene Doublesex within the termite lineage	7
Editorial Board	7
Sex-bias of core intestinal microbiota in different stocks of Chinese mitten crabs (Eriocheir sinensis)	7
A novel indel-based molecular sex identification system for oplegnathus fasciatus: Insights from ndc80 gene polymorphisms and aquaculture applications	7
Transcriptomic signatures associated with developmental transitions in the gill of lake sturgeon (Acipenser fulvescens)	7
Transcriptomic analysis reveals the survival strategies of Mytilus coruscus under short-term rising seawater temperatures	7
Comparative transcriptome analysis reveals physiological responses in liver tissues of Epinephelus coioides under acute hypoxia stress	7
Changes in transcriptome regulations of a marine rotifer Brachionus plicatilis under methylmercury stress	7
Comparative analysis of intestinal structure, enzyme activity, intestinal microbiota and gene expression in different segments of pufferfish (Takifugu Obscurus)	6
Peptidomic analysis of the host-defense peptides in skin secretions of the Amazon River frog Lithobates palmipes (Ranidae)	6
Functional verification of a landmark gene EVM713 involved in spermatogenesis in the marine bivalve Chlamys nobilis	6
De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi	6
New insights into the role of solute carriers in response to salinity stress in the Manila clam (Ruditapes philippinarum)	6
Transcriptome analysis and expression profiles of odorant binding proteins and chemosensory proteins in Orius sauteri	6
Identification and functional analysis of miRNAs in skeletal muscle of juvenile and adult largemouth bass, Micropterus salmoides	6
Molecular mechanisms of kidney-mediated salinity adaptation in Takifugu obscurus, T. rubripes and their hybrid offspring	6
Transcriptome analysis reveals the immune response mechanism of golden cuttlefish (Sepia esculenta) larvae exposed to ink	6
Integrated transcriptomic and proteomic analysis of hepatopancreatic pathological changes in Eriocheir sinensis affected by hepatopancreatic necrosis disease	6
Transcriptomic WGCNA analyses reveal sectional regulatory mechanisms in giant freshwater prawn Macrobrachium rosenbergii larvae under hypoxia-reoxygenation	6
Genome-wide identification of 194 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna	6
Corrigendum to “Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp” [Comp. Biochem. Physiol. Part D Genomics Proteomi	6
Transcriptional and metabolomic investigation of the stress response in snow crab during simulated transport condition (Chionoecetes opilio)	6
16S rRNA gene sequencing analysis reveals an imbalance in the intestinal flora of Eriocheir sinensis with hepatopancreatic necrosis disease	6
Effects of low salinity stress on the taurine metabolism and transport in the Iwagaki oyster Crassostrea nippona	6
Identification and characterization of circadian clock genes in the head transcriptome of Conopomorpha sinensis Bradley	5
Identification of candidate leg chemosensory genes associated with nursing behavior in the Apis mellifera	5
Integrated multi-omics analysis and RNAi reveal Toll signaling pathway and melanization as key defenses in Ostrinia furnacalis against Meteorus pulchricornis parasitism	5
Transcriptomic impacts and potential routes of detoxification in a lampricide-tolerant teleost exposed to TFM and niclosamide	5
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	5
Genome-wide analyses of glutathione S-transferase gene family and expression profiling among three haplotypes Aphis gossypii	5
Neuroendocrine transcriptomics in Eriocheir sinensis: Photoperiod-induced modulation of gonadal development and circadian clock genes in neural tissues	5
Genome-wide analysis reveals the evolutionary history of TAG intracellular lipases and their roles in different molting stages of Decapods	5
Dietary steroids promote body weight growth and induce gametogenesis by increasing the expressions of genes related to cell proliferation of sea cucumber (Apostichopus japonicus)	5
Investigating imidacloprid resistance in Amrasca biguttula biguttula (Ishida) (Hemiptera: Cicadellidae): Insights from RNA-Seq and functional validation using RT-qPCR	5
Transforming growth factor-beta gene family in Labeo rohita: Genome-wide molecular characterization and phylogenetic relationship with other vertebrates	5
Key neuropeptide and neuroendocrine pathways of the optic lobe are affected by high temperatures in the female Octopus maya	5
Transcriptomic analysis of the effect of dietary melatonin on liver immunity in rice field eel (Monopterus albus)	5
Transcriptomic analysis of the gill and hepatopancreas reveals the thermal adaptation mechanisms of Eriocheir sinensis	5
Beyond opioid and SNRI-like actions: Proteomic insights into the effects of tramadol and O-desmethyltramadol in zebrafish larvae	5

Effects of environmentally relevant concentrations of glyphosate and aminomethylphosphonic acid on biotransformation and stress response proteins in the liver of zebrafish (Danio rerio)	5
Effects of low temperature air exposure and immersion on antioxidant, immune, intestinal flora and metabolome of Chinese mitten crab (Eriocheir sinensis)	5
Comparative proteomics elucidates the potential mechanism of heritable carapace color of three strains Chinese mitten crab Eriocheir sinensis	4
MicroRNA-mediated regulation in anoxic Lithobates sylvaticus liver	4
Preliminary analysis of pathways and their implications during salinity stress in abalone	4
Editorial Board	4
Association analysis reveals SNP markers associated with growth traits in swimming crabs (Portunus trituberculatus)	4
Weighted correlation network analysis of the genes in the eyes of juvenile Plectropomus leopardus provide novel insights into the molecular mechanisms of the adaptation to the background color	4
Neighbours matter: Effects of genomic organization on gene expression plasticity in response to environmental stresses during biological invasions	4
Identification of the changes of immune response, morphology, and gene expressions in hepatopancreas of Macrobrachium nipponense under the treatment of alkalinity exposure	4
Editorial Board	4
The energy metabolism and transcriptomic responses of the Manila clam (Ruditapes philippinarum) under the low-temperature stress	4
Changes in the gut bacterial community affect miRNA profiles in Riptortus pedestris under different rearing conditions	4
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	4
Exosomes serve as a crucial mediator of epithelial–fibroblast communication during hair follicle morphogenesis in cashmere goats	4
The toggle switch model for gene expression change during duck skeletal muscle development	4
TMT-based proteomics analysis of sea urchin (Strongylocentrotus intermedius) under high temperature stress	4
Comparative transcriptomics reveals the conservation and divergence of reproductive genes across three sympatric Tomicus bark beetles	4
Circular RNA transcriptome across various development periods of Paralichthys olivaceus reveal skeletal muscle-specific circchd6 regulating myogenesis	4
Incorporation of microgastropoda species provides novel insights into phylogeny of Trochoidea (Gastropoda: Vetigastropoda)	4
Comparative transcriptome analysis reveals the different responding mechanisms of ovary and hepatopancreas following polyI:C challenge in Macrobrachium nipponense	4
Decreased acetylation of HDGF improves oviduct production in Rana dybowskii, Rana amurensis, and Rana huanrenensis	4
Gene family expansion analysis and identification of the histone family in Spodoptera frugiperda	4
Genome-wide identification and expression profiles of sex-related gene families in the Pacific abalone Haliotis discus hannai	4
Identification of sex-related genes across bivalves reveals key genes in gonad development and sex reversal	4
Dietary supplementation of selenium nanoparticle improves the vitellogenesis and fecundity of female zebrafish	4
A comprehensive overview of ovarian small non-coding RNAs in the late overwintering and breeding periods of Onychostoma macrolepis	4
Editorial Board	4
Identification of key lncRNAs and mRNAs in muscle development pathways of Tan sheep	4
Omics-driven insight into physiological responses of species in aquaculture	4
The dynamic transcriptomic response of the goldfish brain under chronic hypoxia	4
The tricarboxylic acid cycle is inhibited under acute stress from carbonate alkalinity in the gills of Eriocheir sinensis	4
Comparative transcriptome analysis reveals key genes and pathways related to gonad development in the sea cucumber Apostichopus japonicus	4
Lipid droplets play versatile roles in ovarian development of the razor clam Sinonovacula constricta: Insights from proteomic and lipidomic analyses	4
Transcriptome profiles revealed high- and low-salinity water altered gill homeostasis in half-smooth tongue sole (Cynoglossus semilaevis)	4
Integrated transcriptomic and proteomic analysis of the physiological changes of the liver in domesticated Eurasian perch, Perca fluviatilis	4
Gonadal transcriptome profiling via RNA-seq during temperature-dependent sex determination and differentiation in the red-eared slider (Trachemys scripta elegans)	4
Effects of myo-inositol on growth and biomarkers of environmental stress and metabolic regulation in Pacific white shrimp (Litopenaeus vannamei) reared at low salinity	4
Investigating the lipid profile of Anopheles stephensi mosquitoes across developmental life stages	4
Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine	4
Proteomic analysis of hepatic fibrosis induced by a high starch diet in largemouth bass (Micropterus salmoides)	4
Transcriptome variation in banded newt (Ommatotriton vittatus) during its life cycle and habitat transition	4
The physiological and transcriptional differences between golden and brown noble scallops Chlamys nobilis	4
Comparative analysis of gut microbiota-mediated bile acid profiles in Bufo gargarizans and Rana chensinensis tadpoles	3
Combined transcriptome and metabolome analysis reveals the mechanism of high nitrite tolerance in freshwater mussel Anodonta woodiana	3
Using proteomics, q-PCR and biochemical methods complementing as a multiapproach to elicit the crucial responses of zebrafish liver exposed to neonicotinoid pesticide	3
Transcriptome analyses reveal differentially expressed genes associated with development of the palatal organ in bighead carp (Hypophthalmichthys nobilis)	3
Transcriptomic insights into vibrio-induced mortality in the clam Meretrix petechialis under high temperature	3
Comparative identification, characterization and high-temperature stress analysis of the fatty acid-binding protein (fabp) genes in largemouth bass (Micropterus salmoides) genome	3
Insights into sequence characteristics and evolutionary history of DGATs in arthropods	3
Microgeographic variation in gene expression plasticity under osmotic stress in wild eastern oyster juveniles (Crassostrea virginica)	3
Effects of replacing fishmeal with different proportions of mixed protein source in the diet of largemouth bass (Micropterus salmoides)	3
Adaptive mitochondrial genome functioning in ecologically different farm-impacted natural seedbeds of the endemic blue mussel Mytilus chilensis	3
Comparative transcriptome analysis for identifying genes involved in reproduction of banana shrimp (Penaeus merguiensis)	3
Distinct skin morphological and transcriptomic profiles between wild and albino Oscar Astronotus ocellatus	3
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum	3
High levels of sinigrin trigger synthesis of fatty acids in Plutella xylostella (L.)	3
Regulation mechanism of endochondral ossification in Rana zhenhaiensis during metamorphosis based on histomorphology and transcriptome analyses	3
An integrated transcriptome, proteome and targeted metabolome analysis reveals genes and steroids related to gonadal development in Ruditapes philippinarum	3
Investigating the molecular basis of cleptobiosis in eusocial stingless bees (Apidae: Hymenoptera)	3
Integrated transcriptomic and lipidomic analysis reveals that arachidonic acid mediates the allograft-induced stress response in Pinctada fucata martensii	3
Genome-wide analysis of the cytochrome P450 gene family in Pacific oyster Crassostrea gigas and their expression profiles during gonad development	3
Whole-genome identification of SOD gene family revealed the expansion of SOD in Chinese mitten crab, Eriocheir sinensis	3
Apoptosis, MAPK signaling pathway affected in tilapia liver following nano-microplastics and sulfamethoxazole acute co-exposure	3
Transcriptome analysis of the moso bamboo pest, Hippotiscus dorsalis, reveals differentially expressed unigenes across various tissues	3
Comparative mitogenomic analyses of the infraclass Pteriomorphia (Mollusca: Bivalvia) provides novel insights into gene rearrangement and phylogeny	3
Liver transcriptome analysis reveals genes and pathways involved in the ovarian development in spotted scat (Scatophagus argus)	3
Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp	3
Synergistic integration of transcriptomics and metabolomics analyses provides novel insights into the mechanisms underlying unsynchronized growth of greater amberjack (Seriola dumerili)	3
Comprehensive analysis of small non-coding RNAs in the liver of Onychostoma macrolepis during overwintering and non-overwintering periods provides insights into the metabolic mechanisms of fish overwi	3
Post-prandial response in hepatopancreas and haemolymph of Penaeus monodon fed different diets. Omics insights into glycoconjugate metabolism, energy utilisation, chitin biosynthesis, immune function,	3
Weighted gene co-expression network analysis of embryos and first instar larvae of the horseshoe crab Tachypleus tridentatus uncovers development gene networks	3
Transcriptomic and metabolomic analyses provide insights into the energy metabolism and signaling regulation of byssus secretion in winged pearl oyster Pteria penguin	3
Pyraclostrobin-induced toxic effects in the gills of common carp (Cyprinus carpio L.): Mechanisms unveiled through biochemical, molecular, and metabolomic analyses	3
Comparative analysis of different Phyllostachys species on gut microbiome and fecal metabolome in giant pandas (Ailuropoda melanoleuca)	3
Transcriptome analysis provides new insight into the mechanism of Bombyx mori under zinc exposure	3
Transcriptome analysis and machine learning methods reveal potential mechanisms of zebrafish muscle aging	3
Comparative skin histological and transcriptomic analysis of Rana kukunoris with two different skin colors	3
Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress	3
Cys-loop ligand-gated ion channel superfamily of Pardosa pseudoannulata: Implication for natural enemy safety	3

Identification of sex-specific splicing via comparative transcriptome analysis of gonads from sea cucumber Apostichopus japonicus	3
Molecular responses of paddy field carp (Cyprinus carpio) in the agricultural heritage to major environmental factors in paddy fields	3
Toxic effects of trichlorfon on the hepatopancreas of Chinese mitten crab (Eriocheir sinensis): Tissue damage, oxidative stress, and Ferroptosis	3
Proteomic responses to progressive dehydration and rehydration in Xenopus laevis	3
Comprehensive analysis of Sox genes in the Pacific oyster (Crassostrea gigas): Insights into expression and potential functions	3
Multi-organ transcriptomics provide insights into growth regulation in the Dongtingking crucian carp (Carassius auratus indigentiaus)	3
Identification of key overlapping DEGs and molecular pathways under multiple stressors in the liver of Nile tilapia (Oreochromis niloticus)	3
Transcriptome profiling of triploid Crassostrea gigas gills indicates the host immune mechanism against bacterial infection	3
Exploring symbiont gene expression in two echinoid-associated shrimp species under host separation	3
Expression analysis of alpha keratins and corneous beta-protein genes during embryonic development of Gekko japonicus	3
Effects of temperature on metamorphosis and endochondral ossification in Rana chensinensis tadpoles	3
Transcriptome analysis reveals molecular mechanism of Dosinia corrugata in response to acute heat stress	3
Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): Proteomic changes across reproductive stages	3
Effects of low temperature on intestinal microbiota composition of silver pomfret (Pampus argenteus)	3
Transcriptomics reveals different response mechanisms of Litopenaeus vannamei hemocytes to injection of Vibrio parahaemolyticus and WSSV	3
The haplotype-resolved chromosome-level genome assembly of Spinibarbus caldwelli provides insights into environmental adaptability and disease resistance	3
Identification of hub genes in digestive system of mandarin fish (Siniperca chuatsi) fed with artificial diet by weighted gene co-expression network analysis	3