OOIR: Observatory of International Research

Papers

(The TQCC of Comparative Biochemistry and Physiology D-Genomics & Proteomics is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Ecotoxicoproteomic assessment of microplastics and plastic additives in aquatic organisms: A review	32
The first two complete mitogenomes of the order Apodida from deep-sea chemoautotrophic environments: New insights into the gene rearrangement, origin and evolution of the deep-sea sea cucumbers	17
Integrated analysis of transcriptomic and metabolomic data to evaluate responses to hypersalinity stress in the gill of the razor clam (Sinonovacula constricta)	17
Transcriptome analysis reveals that high temperatures alter modes of lipid metabolism in juvenile turbot (Scophthalmus maximus) liver	17
Ecotoxico-lipidomics: An emerging concept to understand chemical-metabolic relationships in comparative fish models	15
Imprinting statistically sound conclusions for gut microbiota in comparative animal studies: A case study with diet and teleost fishes	13
Early life stress causes persistent impacts on the microbiome of Atlantic salmon	13
Identification and characterization of long noncoding RNAs provide insight into the regulation of gene expression in response to heat stress in rainbow trout (Oncorhynchus mykiss)	13
Identification of chemosensory genes by antennal transcriptome analysis and expression profiles of odorant-binding proteins in parasitoid wasp Aulacocentrum confusum	12
Transcriptome analysis reveals key genes and pathways associated with egg production in Nandan-Yao domestic chicken	12
Transcriptome analysis of liver provides insight into metabolic and translation changes under hypoxia and reoxygenation stress in silver sillago (Sillago sihama)	12
Combining of transcriptomic and proteomic data to mine immune-related genes and proteins in the liver of Cynoglossus semilaevis challenged with Vibrio anguillarum	11
Comparative transcriptome analysis provides novel insights into the molecular mechanism of the silver carp (Hypophthalmichthys molitrix) brain in response to hypoxia stress	11
Transcriptome sequencing provides insights into the mechanism of hypoxia adaption in bighead carp (Hypophthalmichthys nobilis)	11
Comparative transcriptome analysis reveals changes in gene expression in sea cucumber (Holothuria leucospilota) in response to acute temperature stress	11
Transcriptome reveals the important role of metabolic imbalances, immune disorders and apoptosis in the treatment of Procambarus clarkii at super high temperature	10
Transcriptional changes revealed water acidification leads to the immune response and ovary maturation delay in the Chinese mitten crab Eriocheir sinensis	10
Are we forgetting the “proteomics” in multi-omics ecotoxicology?	10
Transcriptomic analyses provide insights into the adaptive responses to heat stress in the ark shells, Scapharca subcrenata	9
Physiological parameters and gut microbiome associated with different dietary lipid levels in hybrid yellow catfish (Tachysurus fulvidraco♀× Pseudobagrus vachellii♂)	9
Short- and medium-term exposures of diazepam induce metabolomic alterations associated with the serotonergic, dopaminergic, adrenergic and aspartic acid neurotransmitter systems in zebrafish (Danio re	9
Physiological responses and molecular strategies in heart of silver carp (Hypophthalmichthys molitrix) under hypoxia and reoxygenation	9
Growth trait gene analysis of kuruma shrimp (Marsupenaeus japonicus) by transcriptome study	8
Adaptive mitochondrial genome functioning in ecologically different farm-impacted natural seedbeds of the endemic blue mussel Mytilus chilensis	8
Metabolomic analysis of white, green and purple morphs of sea cucumber Apostichopus japonicus during body color pigmentation process	8

Identification and analysis of olfactory genes in Dioryctria abietella based on the antennal transcriptome	8
Sex-dependent host-microbiome dynamics in zebrafish: Implications for toxicology and gastrointestinal physiology	8
Comparative phylotranscriptomics reveals putative sex differentiating genes across eight diverse bivalve species	8
Effects of moderate exercise on hepatic amino acid and fatty acid composition, liver transcriptome, and intestinal microbiota in channel catfish (Ictalurus punctatus)	8
Identification and expression profiling of chemosensory membrane protein genes in Achelura yunnanensis (Lepidoptera: Zygaenidae)	8
Transcriptome profiling reveal Acanthopanax senticosus improves growth performance, immunity and antioxidant capacity by regulating lipid metabolism in GIFT (Oreochromis niloticus)	8
The genome of the freshwater monogonont rotifer Brachionus angularis: Identification of phase I, II, and III detoxification genes and their roles in molecular ecotoxicology	8
Residual molecular and behavioral effects of the phenylpyrazole pesticide fipronil in larval zebrafish (Danio rerio) following a pulse embryonic exposure	8
Transcriptomic responses to heat stress in gill and liver of endangered Brachymystax lenok tsinlingensis	8
Exposure to heat stress causes downregulation of immune response genes and weakens the disease resistance of Micropterus salmoides	8
Effect of creatine and EDTA supplemented diets on European seabass (Dicentrarchus labrax) allergenicity, fish muscle quality and omics fingerprint	8
Transcriptome and functional responses to absence of astaxanthin in Atlantic salmon fed low marine diets	8
Hypoxic responses in Oncorhynchus mykiss involve angiogenesis, lipid, and lactate metabolism, which may be triggered by the cortisol stress response and epigenetic methylation	7
Expected ocean warming conditions significantly alter the transcriptome of developing postlarval American lobsters (Homarus americanus): Implications for energetic trade-offs	7
Comparative transcriptomic assessment of the chemosensory receptor repertoire of Drosophila suzukii adult and larval olfactory organs	7
The genome of the marine monogonont rotifer Brachionus rotundiformis and insight into species-specific detoxification components in Brachionus spp.	7
Characterization of the intestinal digesta and mucosal microbiome of the grass carp (Ctenopharyngodon idella)	7
Plastics in our water: Fish microbiomes at risk?	7
Alterations of amino acid metabolism and intestinal microbiota in Chinese mitten crab (Eriocheir sinensis) fed on formulated diet and iced trash fish	7
Identification and expression of chemosensory receptor genes in the egg parasitoid Trissolcus basalis	7
Application of proteomics in shrimp and shrimp aquaculture	7
Environmental salinity influences the branchial expression of TCR pathway related genes based on transcriptome of a catadromous fish	7
Effects of dietary icariin supplementation on the ovary development-related transcriptome of Chinese mitten crab (Eriocheir sinensis)	7
Gill physiological and transcriptomic response of the threatened freshwater mussel Solenaia oleivora to salinity shift	7
Transcriptome profiling revealed the growth superiority of hybrid pufferfish derived from Takifugu obscurus ♀ × Takifugu rubripes ♂	6
Genome-wide identification and analysis of HECT E3 ubiquitin ligase gene family in Ruditapes philippinarum and their involvement in the response to heat stress and Vibrio anguillarum infection	6
Physiological, morphological and transcriptomic responses of Tibetan naked carps (Gymnocypris przewalskii) to salinity variations	6
Integrative mRNA-miRNA interaction analysis reveals the molecular mechanism of skin color variation between wild-type and yellow mutant rainbow trout (Oncorhynchus mykiss)	6
Chromosome-level genome assembly of the European flat oyster (Ostrea edulis) provides insights into its evolution and adaptation	6
Transcriptomic analysis revealed gene expression profiles during the sex differentiation of Chinese tongue sole (Cynoglossus semilaevis)	6
16S rRNA gene sequencing analysis reveals an imbalance in the intestinal flora of Eriocheir sinensis with hepatopancreatic necrosis disease	6
RNA-seq analysis of the differential response to low-temperature stress in two morphs of mud crabs (Scylla paramamosain)	6
Comparative proteomics elucidates the dynamics of ovarian development in the Chinese mitten crab Eriocheir sinensis	6
Meta-analysis of differentially-regulated hepatic microRNAs identifies candidate post-transcriptional regulation networks of intermediary metabolism in rainbow trout	6
Study of the venom proteome of Vipera ammodytes ammodytes (Linnaeus, 1758): A qualitative overview, biochemical and biological profiling	6
Evolution of nacre- and prisms-related shell matrix proteins in the pen shell, Atrina pectinata	6
Involvement of glycolysis activation in flatfish sexual size dimorphism: Insights from transcriptomic analyses of Platichthys stellatus and Cynoglossus semilaevis	6
Comparative mitogenomic analysis of the superfamily Tellinoidea (Mollusca: Bivalvia): Insights into the evolution of the gene rearrangements	6
Comparative transcriptome analysis reveals metabolism transformation in Coilia nasus larvae during the mouth-open period	6
The mantle exosome proteins of Hyriopsis cumingii participate in shell and nacre color formation	6
Transcriptome analysis of hepatopancreas from different living states oriental river prawn (Macrobrachium nipponense) in response to hypoxia	5
Transcriptional response to cold and fasting acclimation in Onychostoma macrolepis during the overwintering stage	5
The genome of the minute marine rotifer Proales similis: Genome-wide identification of 401 G protein-coupled receptor (GPCR) genes	5
Sex dependent transcriptome responses of the diamondback moth, Plutella xylostella L. to cold stress	5
Transcriptome analysis of gender-biased CYP genes in gonads of the sea cucumber Apostichopus japonicus	5
Snake venom proteomics and antivenomics of two Sundaic lance-headed pit vipers: Trimeresurus wiroti (Malaysia) and Trimeresurus puniceus (Indonesia)	5
The gut content microbiome of wild-caught rainbow darter is altered during laboratory acclimation	5
Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance	5
Transcriptome analysis provides insights into long noncoding RNAs in medaka gonads	5
Transcriptome analysis reveals key genes and pathways related to sex differentiation in the Chinese soft-shelled turtle (Pelodiscus sinensis)	5

Metabonomics of white adipose tissue and brown adipose tissue in Tupaia belangeri during cold acclimation	5
HPLC-MS-based untargeted metabolomic analysis of differential plasma metabolites and their associated metabolic pathways in reproductively anosmic black porgy, Acanthopagrus schlegelii	5
Analysis of the Glyphodes pyloalis larvae immune transcriptome in response to parasitization by its endoparasitoid, Aulacococentrum confusum	5
Comparative transcriptomic analysis revealed changes in multiple signaling pathways involved in protein degradation in the digestive gland of Mytilus coruscus during high-temperatures	5
The genome of the marine water flea Diaphanosoma celebensis: Identification of phase I, II, and III detoxification genes and potential applications in marine molecular ecotoxicology	5
Transcriptome analysis revealed multiple immune processes and energy metabolism pathways involved in the defense response of the large yellow croaker Larimichthys crocea against Pseudomonas plecogloss	5
Comparative microRNAs expression profiles analysis during embryonic development of common carp, Cyprinus carpio	5
Environmental enrichment during early rearing provokes epigenetic changes in the brain of a salmonid fish	5
Comparative epigenetics in animal physiology: An emerging frontier	5
Transcriptomic changes in the pea aphid, Acyrthosiphon pisum: Effects of the seasonal timer and photoperiod	5
Comparative transcriptome analysis of lethality in response to RNA interference of the oriental river prawn (Macrobrachium nipponense)	5
Divergent metabolic responses to sex and reproduction in the sea cucumber Apostichopus japonicus	5
Transcriptome analysis of acute high temperature-responsive genes and pathways in Palaemon gravieri	5
The transcriptomic response of adult salmon lice (Lepeophtheirus salmonis) to reduced salinity	5
Transcriptomic and proteomic analysis of the underlying mechanisms of digestion of triacylglycerols and phosphatides and absorption and fate of fatty acids along the midgut of Musca domestica	5
The effects of bisphenol A on liver proteome and mucus vitellogenin in comparison to plasma as a non-invasive biomarker in immature Siberian sturgeons (Acipenser baerii)	5
Transcriptome analysis reveals roles of polian vesicle in sea cucumber Apostichopus japonicus response to Vibrio splendidus infection	5
Human type 2 diabetes mellitus-associated transcriptional disturbances in a high-sugar diet long-term exposed Drosophila melanogaster	5
Identification and preliminary characterization of chemosensory-related proteins in the gall fly, Procecidochares utilis by transcriptomic analysis	5
Characterization and expression profiling of G protein-coupled receptors (GPCRs) in Spodoptera litura (Lepidoptera: Noctuidae)	4
Whole brain transcriptomics of intermittently fed individuals of the marine teleost Sparus aurata	4
Sex-specific lipid profiles in the muscle of Atlantic salmon juveniles	4
Withering syndrome induced gene expression changes and a de-novo transcriptome for the Pinto abalone, Haliotis kamtschatkana	4
Identification and characterization of the novel genes encoding glutathione S-transferases in Mytilus galloprovincialis	4
Atlantic sturgeon and shortnose sturgeon exhibit highly divergent transcriptomic responses to acute heat stress	4
Comparative transcriptome analysis reveals physiological responses in liver tissues of Epinephelus coioides under acute hypoxia stress	4
Transcriptomic analysis of pituitary in female and male spotted scat (Scatophagus argus) after 17β-estradiol injection	4
Comparative transcriptomic analysis reveals the gonadal development-related gene response to environmental temperature in Mauremys mutica	4
Metabolism responses in the intestine of Oreochromis mossambicus exposed to salinity, alkalinity and salt-alkalinity stress using LC-MS/MS-based metabolomics	4
Different transcriptomic architecture of the gill epithelia in Nile and Mozambique tilapia after salinity challenge	4
Expression profiling and functional characterization of the duplicated Oxr1b gene in zebrafish	4
Transcriptome analysis provides the first insight into the molecular basis of temperature plasticity in Banggai cardinalfish, Pterapogon kauderni	4
Identification and functional analysis of circRNAs in the skeletal muscle of juvenile and adult largemouth bass (Micropterus salmoides)	4
Hepatic transcriptome analysis reveals the metabolic strategies of largemouth bass (Micropterus salmoides) under different dissolved oxygen condition	4
Gonadal transcriptome analysis of paradise fish Macropodus opercularis to reveal sex-related genes	4
Fatter or stronger: Resource allocation strategy and the underlying metabolic mechanisms in amphibian tadpoles	4
Effects of enrofloxacin's exposure on the gut microbiota of Tilapia fish (Oreochromis niloticus)	4
Large lipid transfer proteins in hepatopancreas of the mud crab Scylla paramamosain	4
De novo gonad transcriptome analysis of elongate loach (Leptobotia elongata) provides novel insights into sex-related genes	4
Comparative lipidomics profiling of the sea urchin, Strongylocentrotus intermedius	4
Genome-wide identification and structural analysis of heat shock protein gene families in the marine rotifer Brachionus spp.: Potential application in molecular ecotoxicology	4
Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp	4
Identification and functional analysis of microRNAs in the regulation of summer diapause in Galeruca daurica	4