BMC Biology

Papers
(The TQCC of BMC Biology is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)
ArticleCitations
Changing turn-over rates regulate abundance of tryptophan, GS biosynthesis, IAA transport and photosynthesis proteins in Arabidopsis growth defense transitions166
Functional characterization of the second feedback loop in the circadian clock of the Antarctic krill Euphausia superba145
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation74
Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage74
Cuticular competing endogenous RNAs regulate insecticide penetration and resistance in a major agricultural pest64
Wolbachia incompatible insect technique program optimization over large spatial scales using a process-based model of mosquito metapopulation dynamics61
Author Correction: Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution60
A whole-body atlas of BMP signaling activity in an adult sea anemone59
Circannual breeding and methylation are impacted by the equinox in Peromyscus59
Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F1 hybrids58
Incomplete lineage sorting and introgression among genera and species of Liliaceae tribe Tulipeae: insights from phylogenomics56
A muscle exercise research revolution powered by -omics at single cell and nucleus resolution55
Integration of large and diverse angiosperm DNA fragments into Asian Gnetum mitogenomes54
Cdk5-mediated JIP1 phosphorylation regulates axonal outgrowth through Notch1 inhibition53
Fossil-calibrated molecular clock data enable reconstruction of steps leading to differentiated multicellularity and anisogamy in the Volvocine algae52
Flexible and stretchable polymer optical fibers for chronic brain and vagus nerve optogenetic stimulations in free-behaving animals51
The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants50
Single-cell transcriptomics and time-series metabolite profiling reveal the spatiotemporal regulation of flavonoid biosynthesis genes and phytohormone homeostasis by PAP1 in Arabidopsis49
Polycomb contraction differentially regulates terminal human hematopoietic differentiation programs48
Assessing the role of Piscine orthoreovirus in disease and the associated risk for wild Pacific salmon47
Back to the roots, desiccation and radiation resistances are ancestral characters in bdelloid rotifers46
Increased interaction between endoplasmic reticulum and mitochondria following sleep deprivation46
DualNetM: an adaptive dual network framework for inferring functional-oriented markers46
Experimental demonstration of tethered gene drive systems for confined population modification or suppression46
Investigating the characteristics of genes and variants associated with self-reported hearing difficulty in older adults in the UK Biobank45
Evolutionary dynamics of mitochondrial genomes and intracellular transfers among diploid and allopolyploid cotton species43
Histone modifications and DNA methylation act cooperatively in regulating symbiosis genes in the sea anemone Aiptasia43
Personalised modelling of clinical heterogeneity between medium-chain acyl-CoA dehydrogenase patients42
The gut symbiont Sphingomonas mediates imidacloprid resistance in the important agricultural insect pest Aphis gossypii Glover40
Reconstructing the ancestral gene pool to uncover the origins and genetic links of Hmong–Mien speakers40
Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress39
Multidimensional associations between nutrient intake and healthy ageing in humans39
Temporal dynamics of apoptosis-induced proliferation in pupal wing development: implications for regenerative ability39
Insights into the formation and diversification of a novel chiropteran wing membrane from embryonic development39
The mrp-3 gene is involved in haem efflux and detoxification in a blood-feeding nematode39
Hibernation reduces GABA signaling in the brainstem to enhance motor activity of breathing at cool temperatures39
The temporal association of CapZ with early endosomes regulates endosomal trafficking and viral entry into host cells38
Regenerating zebrafish scales express a subset of evolutionary conserved genes involved in human skeletal disease38
A systematic review of the development and application of home cage monitoring in laboratory mice and rats37
Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron37
Plasmodium yoelii iron transporter PyDMT1 interacts with host ferritin and is required in full activity for malarial pathogenesis37
Camelot: a computer-automated micro-extensometer with low-cost optical tracking37
Rapid and sensitive single-cell RNA sequencing with SHERRY234
PACmn for improved optogenetic control of intracellular cAMP34
A unified evolutionary origin for the ubiquitous protein transporters SecY and YidC34
Avian interferon regulatory factor (IRF) family reunion: IRF3 and IRF9 found34
ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana33
Sexually dimorphic methylation patterns characterize the placenta and blood from extremely preterm newborns33
CCHCR1-astrin interaction promotes centriole duplication through recruitment of CEP7233
Population transcriptogenomics highlights impaired metabolism and small population sizes in tree frogs living in the Chernobyl Exclusion Zone33
Next steps after airing disagreement on a scientific issue with policy implications: a meta-analysis, multi-lab replication and adversarial collaboration32
GnRH-driven FTO-mediated RNA m6A modification promotes gonadotropin synthesis and secretion32
Differentially expressed chaperone genes reveal a stress response required for unidirectional regeneration in the basal chordate Ciona32
Astrocytes in CA1 modulate schema establishment in the hippocampal-cortical neuron network31
The genome and sex-dependent responses to temperature in the common yellow butterfly, Eurema hecabe31
Temperature-dependent dynamics of energy stores in Drosophila31
Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions31
Rapid and high-throughput screening of proteolysis targeting chimeras using a dual-reporter system expressing fluorescence protein and luciferase31
Imprinted Grb10, encoding growth factor receptor bound protein 10, regulates fetal growth independently of the insulin-like growth factor type 1 receptor (Igf1r) and insulin receptor (Insr) genes31
A human iPSC-derived inducible neuronal model of Niemann-Pick disease, type C130
A single-cell transcriptomic atlas of all cell types in the brain of 5xFAD Alzheimer mice in response to dietary inulin supplementation30
Histone acetyltransferase NAA40 modulates acetyl-CoA levels and lipid synthesis30
Decidual stromal cells-derived exosomes incured insufficient migration and invasion of trophoblast because of abnormal ubiquitination and degradation of Snail mediated by miR-92b-3p/USP2830
Dopamine modulates the retinal clock through melanopsin-dependent regulation of cholinergic waves during development29
RNA multi-omics in single cells reveal rhythmical RNA reshaping during human and mouse oocyte maturation29
Proton export upregulates aerobic glycolysis29
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance29
Maternal genetic origin of Chao Lay coastal maritime populations from Thailand29
Viral predation pressure on coral reefs29
Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii29
Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus29
Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions across generations to maintain fitness29
The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen28
Articulating the “stem cell niche” paradigm through the lens of non-model aquatic invertebrates28
An expanded odorant-binding protein mediates host cue detection in the parasitic wasp Baryscapus dioryctriae basis of the chromosome-level genome assembly analysis28
Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization28
Genomic insights into biased allele loss and increased gene numbers after genome duplication in autotetraploid Cyclocarya paliurus28
Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks28
Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata28
Selection on the promoter regions plays an important role in complex traits during duck domestication27
Single-cell RNA-seq analysis of rat molars reveals cell identity and driver genes associated with dental mesenchymal cell differentiation27
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly27
Microplastics and soil microbiomes27
Deep time extinction of largest insular ant predators and the first fossil Neoponera (Formicidae: Ponerinae) from Miocene age Dominican amber27
Rare but specific: 5-bp composite motifs define SMAD binding in BMP signaling27
Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites27
Atomic force microscopy reveals involvement of the cell envelope in biomechanical properties of sickle erythrocytes27
How much do we know about the function of mammalian genes?27
Two decades taken at speed: genomics, cell biology, ecology, and evolution of protists27
Hybridisation has shaped a recent radiation of grass-feeding aphids26
CircRNA identification and feature interpretability analysis26
Wheat inositol pyrophosphate kinase TaVIH2-3B modulates cell-wall composition and drought tolerance in Arabidopsis26
Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs26
Comparative genomics of Ascetosporea gives new insight into the evolutionary basis for animal parasitism in Rhizaria26
Long non-coding RNA Tug1 modulates mitochondrial and myogenic responses to exercise in skeletal muscle26
An ensemble deep learning framework for multi-class LncRNA subcellular localization with innovative encoding strategy26
A novel small molecule, AS1, reverses the negative hedonic valence of noxious stimuli26
Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites26
Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo26
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis25
The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB25
Unravelling the hidden side of laundry: malodour, microbiome and pathogenome25
The divergent ER-mitochondria encounter structures (ERMES) are conserved in parabasalids but lost in several anaerobic lineages with hydrogenosomes25
Genomic analyses support locally derived crown-of-thorns seastar outbreaks in the Pacific25
Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth24
Gene flow and an anomaly zone complicate phylogenomic inference in a rapidly radiated avian family (Prunellidae)24
The impact of insertion bias into piRNA clusters on the invasion of transposable elements24
The genome and comparative transcriptome of the euryhaline model ciliate Paramecium duboscqui reveal adaptations to environmental salinity24
Bio-informed synthesis of marine-sourced indole derivatives: suppressing gram-negative bacteria biofilm and virulence24
DNA methylation haplotype block signatures responding to Staphylococcus aureus subclinical mastitis and association with production and health traits24
CRISPR/Cas9-mediated gene knockout and interallelic gene conversion in human induced pluripotent stem cells using non-integrative bacteriophage-chimeric retrovirus-like particles23
Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems23
Optimizing dsRNA sequences for RNAi in pest control and research with the dsRIP web platform23
Attraction and aversion of noctuid moths to fermented food sources coordinated by olfactory receptors from distinct gene families23
The Musa troglodytarum L. genome provides insights into the mechanism of non-climacteric behaviour and enrichment of carotenoids23
The pharyngeal taste organ of a blood-feeding insect functions in food recognition23
orsai, the Drosophila homolog of human ETFRF1, links lipid catabolism to growth control23
The chromosome-level genome and key genes associated with mud-dwelling behavior and adaptations of hypoxia and noxious environments in loach (Misgurnus anguillicaudatus)23
Non-invasive measurements of respiration and heart rate across wildlife species using Eulerian Video Magnification of infrared thermal imagery23
Accurate RNA velocity estimation based on multibatch network reveals complex lineage in batch scRNA-seq data23
Global patterns of genomic and phenotypic variation in the invasive harlequin ladybird23
A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics23
CRISPR-based genome editing of a diurnal rodent, Nile grass rat (Arvicanthis niloticus)22
Ovarian ERβ cistrome and transcriptome reveal chromatin interaction with LRH-122
Deciphering the roles of subcellular distribution and interactions involving the MEF2 binding region, the ankyrin repeat binding motif and the catalytic site of HDAC4 in Drosophila neuronal morphogene22
Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP14022
An extensional strain sensing mechanosome drives adhesion-independent platelet activation at supraphysiological hemodynamic gradients22
Spatial and temporal heterogeneity in the lineage progression of fine oligodendrocyte subtypes22
Cont-ID: detection of sample cross-contamination in viral metagenomic data22
Weathered granites and soils harbour microbes with lanthanide-dependent methylotrophic enzymes22
Species co-occurrence and management intensity modulate habitat preferences of forest birds22
Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture22
Transcriptomic signatures of oxytosis/ferroptosis are enriched in Alzheimer’s disease21
Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon21
Monoamine oxidases activity maintains endometrial monoamine homeostasis and participates in embryo implantation and development21
Genetic evidence of tri-genealogy hypothesis on the origin of ethnic minorities in Yunnan21
Plastid phylogenomic insights into relationships of all flowering plant families21
MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links21
Accurate prediction of drug-protein interactions by maintaining the original topological relationships among embeddings21
The neglected burden of chronic hypoxia on the resistance of glioblastoma multiforme to first-line therapies21
Morphology and mechanical behavior of diatoms in wet and dry states studied using nano-XCT21
Developing long-term conservation priority planning for medicinal plants in China by combining conservation status with diversity hotspot analyses and climate change prediction21
Transcriptome analysis reveals PTBP1 as a key regulator of circRNA biogenesis21
The genomes of Vischeria oleaginous microalgae shed light on the molecular basis of hyper-accumulation of lipids20
Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops20
The function of wing bullae in mayflies (Insecta: Ephemeroptera) reveals new insights into the early evolution of Pterygota20
The protein phosphatase PP6 promotes RIPK1-dependent PANoptosis20
Protists and protistology in the Anthropocene: challenges for a climate and ecological crisis20
Sex or poison? Genetic pest management in the 21st century20
NeuroScale: evolutional scale-based protein language models enable prediction of neuropeptides20
Targeting of REST with rationally-designed small molecule compounds exhibits synergetic therapeutic potential in human glioblastoma cells20
VEGF-dependent testicular vascularisation involves MEK1/2 signalling and the essential angiogenesis factors, SOX7 and SOX1720
YModPred: an interpretable prediction method for multi-type RNA modification sites in S. cerevisiae based on deep learning20
Evolution of left–right asymmetry in the sensory system and foraging behavior during adaptation to food-sparse cave environments20
Author Correction: Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling20
Identifying effective evolutionary strategies-based protocol for uncovering reaction kinetic parameters under the effect of measurement noises20
Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout20
20-Hydroxyecdysone counteracts insulin to promote programmed cell death by modifying phosphoglycerate kinase 120
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor20
Evolutionary genomics of socially polymorphic populations of Pogonomyrmex californicus20
Two decades of population genomics: will we ever agree on bacterial species?20
PFTK1 kinase regulates axogenesis during development via RhoA activation20
The precedence effect in spatial hearing manifests in cortical neural population responses20
Nitrogen fixation by diverse diazotrophic communities can support population growth of arboreal ants20
ADARs regulate cuticle collagen expression and promote survival to pathogen infection19
The Sino-Himalayan flora evolved from lowland biomes dominated by tropical floristic elements19
Resolving biology’s dark matter: species richness, spatiotemporal distribution, and community composition of a dark taxon19
Deep learning-based behavioral profiling of rodent stroke recovery19
Lessons in immune adaptations to hypoxia revealed by comparative and evolutionary physiology19
Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains19
The crotonylated and succinylated proteins of jujube involved in phytoplasma-stress responses19
TRPM4 regulates hilar mossy cell loss in temporal lobe epilepsy18
OrgaMapper: a robust and easy-to-use workflow for analyzing organelle positioning18
Lipases are differentially regulated by hormones to maintain free fatty acid homeostasis for insect brain development18
Latitude-driven adaptive evolution of body length in diverse pig breeds across China18
MvGraphDTA: multi-view-based graph deep model for drug-target affinity prediction by introducing the graphs and line graphs18
Modular evolution of secretion systems and virulence plasmids in a bacterial species complex18
Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves18
Targeting the gut-lung axis by synbiotic feeding to infants in a randomized controlled trial18
A simple high-throughput method for automated detection of Drosophila melanogaster light-dependent behaviours18
Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans18
Publisher Correction to: An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization17
Unveiling the ventral morphology of a rare early Cambrian great appendage arthropod from the Chengjiang biota of China17
Epigenetic silencing and genome dynamics determine the fate of giant virus endogenizations in Acanthamoeba17
Gram-negative bacteria resist antimicrobial agents by a DzrR-mediated envelope stress response17
Toward efficient and high-fidelity metagenomic data from sub-nanogram DNA: evaluation of library preparation and decontamination methods17
Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales17
Gene losses may contribute to subterranean adaptations in naked mole-rat and blind mole-rat17
Experimental evidence for enzymatic cell wall dissolution in a microbial protoplast feeder (Orciraptor agilis, Viridiraptoridae)17
Single-base resolution quantitative genome methylation analysis in the model bacterium Helicobacter pylori by enzymatic methyl sequencing (EM-Seq) reveals influence of strain, growth phase, and methyl17
AmpHGT: expanding prediction of antimicrobial activity in peptides containing non-canonical amino acids using multi-view constrained heterogeneous graph transformer17
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis17
Behavioral differences among domestic cats in the response to cat-attracting plants and their volatile compounds reveal a potential distinct mechanism of action for actinidine17
The rapid developments of membrane protein structure biology over the last two decades17
The Automated Systematic Search Deduplicator (ASySD): a rapid, open-source, interoperable tool to remove duplicate citations in biomedical systematic reviews17
Caenorhabditis elegans exhibits positive gravitaxis17
A novel aminotransferase gene and its regulator acquired in Saccharomyces by a horizontal gene transfer event17
Analysis of co-isogenic prion protein deficient mice reveals behavioral deficits, learning impairment, and enhanced hippocampal excitability17
Hyaluronidase-1-mediated glycocalyx impairment underlies endothelial abnormalities in polypoidal choroidal vasculopathy17
Publisher Correction: Attractive and repulsive effects of sensory history concurrently shape visual perception17
Genome-wide identification and analysis of a cotton secretome reveals its role in resistance against Verticillium dahliae17
Cranial base synostosis in mice caused by upregulation of Wnt following partial inhibition of Shh17
Screens in fly and beetle reveal vastly divergent gene sets required for developmental processes16
An HSP90 cochaperone Ids2 maintains the stability of mitochondrial DNA and ATP synthase16
KLF13 promotes ferroptosis and chemosensitivity in lung adenocarcinoma16
Griottes: a generalist tool for network generation from segmented tissue images16
Folate regulates RNA m5C modification and translation in neural stem cells16
FACT regulates pluripotency through proximal and distal regulation of gene expression in murine embryonic stem cells16
Nuclear receptor RXRα binds the precursor of miR-103 to inhibit its maturation16
Ephrin-B2 deletion in GABAergic neurons induces cognitive deficits associated with single-nucleus transcriptomic differences in the prefrontal cortex16
Escherichia cryptic clade I is an emerging source of human intestinal pathogens16
Sex-limited chromosomes and non-reproductive traits16
The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with a reduced posterior tagma16
Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome16
Nuclear lamina component KAKU4 regulates chromatin states and transcriptional regulation in the Arabidopsis genome16
Targeted C•G-to-T•A base editing with TALE-cytosine deaminases in plants16
MultiCycPermea: accurate and interpretable prediction of cyclic peptide permeability using a multimodal image-sequence model16
Highly distinct genetic programs for peripheral nervous system formation in chordates16
Blueprints for healing: central nervous system regeneration in zebrafish and neonatal mice16
Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons16
Novel high-resolution targeted sequencing of the cervicovaginal microbiome16
Protein secretion zones during overexpression of amylase within the Gram-positive cell wall16
The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors16
A novel protein encoded by circRsrc1 regulates mitochondrial ribosome assembly and translation during spermatogenesis16
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates16
The protein aggregation inhibitor YAT2150 has potent antimalarial activity in Plasmodium falciparum in vitro cultures16
Correction: Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks15
Co-option of the limb patterning program in cephalopod eye development15
Leveraging the predictive power of 3D organoids in dogs to develop new treatments for man and man’s best friend15
Ancient genomes from the Tang Dynasty capital reveal the genetic legacy of trans-Eurasian communication at the eastern end of Silk Road15
Differentiated adaptative genetic architecture and language-related demographical history in South China inferred from 619 genomes from 56 populations15
Pangenome analysis reveals transposon-driven genome evolution in cotton15
Chronic sleep deprivation disturbs energy balance modulated by suprachiasmatic nucleus efferents in mice15
A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity15
Ancient genomes in Southwest China revealed genetic interactions among diverse populations in the historical period15
Dissecting thrombus-directed chemotaxis and random movement in neutrophil near-thrombus motion in flow chambers15
Wide-scale geographical analysis of genetic ancestry in the South African Coloured population15
Stress decreases spermatozoa quality and induces molecular alterations in zebrafish progeny15
Global phylogenomic assessment of Leptoseris and Agaricia reveals substantial undescribed diversity at mesophotic depths15
Guanine crystal formation by bacteria15
Comparative macrogenomics reveal plateau adaptation of gut microbiome in cervids15
Unveiling cell-type-specific microRNA networks through alternative polyadenylation in glioblastoma15
Author Correction: Unique sperm haplotypes are associated with phenotypically different sperm subpopulations in Astyanax fish15
Taxonomy-aware, sequence similarity ranking reliably predicts phage–host relationships15
Author Correction: Novel function of single-target regulator NorR involved in swarming motility and biofilm formation revealed in Vibrio alginolyticus15
HNF-DDA: subgraph contrastive-driven transformer-style heterogeneous network embedding for drug–disease association prediction15
Reduced intestinal lipid absorption improves glucose metabolism in aged G2-Terc knockout mice15
Deficient DNA base-excision repair in the forebrain leads to a sex-specific anxiety-like phenotype in mice15
A CD24+CD271+ melanoma cancer stem cell possesses hybrid characteristics of its single marker counterparts and promotes invasion and therapeutic resistance15
Large-scale data analysis for robotic yeast one-hybrid platforms and multi-disciplinary studies using GateMultiplex15
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