BMC Biology

Papers
(The TQCC of BMC Biology is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-10-01 to 2025-10-01.)
ArticleCitations
Changing turn-over rates regulate abundance of tryptophan, GS biosynthesis, IAA transport and photosynthesis proteins in Arabidopsis growth defense transitions175
Functional characterization of the second feedback loop in the circadian clock of the Antarctic krill Euphausia superba78
Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage76
Back to the roots, desiccation and radiation resistances are ancestral characters in bdelloid rotifers68
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation63
Investigating the characteristics of genes and variants associated with self-reported hearing difficulty in older adults in the UK Biobank63
Single-cell transcriptomics and time-series metabolite profiling reveal the spatiotemporal regulation of flavonoid biosynthesis genes and phytohormone homeostasis by PAP1 in Arabidopsis62
Polycomb contraction differentially regulates terminal human hematopoietic differentiation programs60
Experimental demonstration of tethered gene drive systems for confined population modification or suppression59
DualNetM: an adaptive dual network framework for inferring functional-oriented markers58
Increased interaction between endoplasmic reticulum and mitochondria following sleep deprivation57
Evolutionary dynamics of mitochondrial genomes and intracellular transfers among diploid and allopolyploid cotton species57
A whole-body atlas of BMP signaling activity in an adult sea anemone56
Assessing the role of Piscine orthoreovirus in disease and the associated risk for wild Pacific salmon54
Fossil-calibrated molecular clock data enable reconstruction of steps leading to differentiated multicellularity and anisogamy in the Volvocine algae52
Cdk5-mediated JIP1 phosphorylation regulates axonal outgrowth through Notch1 inhibition50
Flexible and stretchable polymer optical fibers for chronic brain and vagus nerve optogenetic stimulations in free-behaving animals49
Wolbachia incompatible insect technique program optimization over large spatial scales using a process-based model of mosquito metapopulation dynamics49
Hibernation reduces GABA signaling in the brainstem to enhance motor activity of breathing at cool temperatures48
Multidimensional associations between nutrient intake and healthy ageing in humans48
The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants48
Circannual breeding and methylation are impacted by the equinox in Peromyscus47
Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F1 hybrids45
The gut symbiont Sphingomonas mediates imidacloprid resistance in the important agricultural insect pest Aphis gossypii Glover45
Machine learning combined with omics-based approaches reveals T-lymphocyte cellular fate imbalance in abdominal aortic aneurysm44
Cuticular competing endogenous RNAs regulate insecticide penetration and resistance in a major agricultural pest44
Reconstructing the ancestral gene pool to uncover the origins and genetic links of Hmong–Mien speakers41
Integration of large and diverse angiosperm DNA fragments into Asian Gnetum mitogenomes41
Incomplete lineage sorting and introgression among genera and species of Liliaceae tribe Tulipeae: insights from phylogenomics40
A muscle exercise research revolution powered by -omics at single cell and nucleus resolution40
The genome and sex-dependent responses to temperature in the common yellow butterfly, Eurema hecabe39
Author Correction: Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution39
Histone modifications and DNA methylation act cooperatively in regulating symbiosis genes in the sea anemone Aiptasia39
Personalised modelling of clinical heterogeneity between medium-chain acyl-CoA dehydrogenase patients39
Imprinted Grb10, encoding growth factor receptor bound protein 10, regulates fetal growth independently of the insulin-like growth factor type 1 receptor (Igf1r) and insulin receptor (Insr) genes38
Astrocytes in CA1 modulate schema establishment in the hippocampal-cortical neuron network37
Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus37
Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress37
Next steps after airing disagreement on a scientific issue with policy implications: a meta-analysis, multi-lab replication and adversarial collaboration37
Viral predation pressure on coral reefs37
Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii36
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance36
Dopamine modulates the retinal clock through melanopsin-dependent regulation of cholinergic waves during development35
Decidual stromal cells-derived exosomes incured insufficient migration and invasion of trophoblast because of abnormal ubiquitination and degradation of Snail mediated by miR-92b-3p/USP2834
Genomic insights into biased allele loss and increased gene numbers after genome duplication in autotetraploid Cyclocarya paliurus34
Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions33
Sexually dimorphic methylation patterns characterize the placenta and blood from extremely preterm newborns33
A unified evolutionary origin for the ubiquitous protein transporters SecY and YidC33
The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen33
A systematic review of the development and application of home cage monitoring in laboratory mice and rats33
CCHCR1-astrin interaction promotes centriole duplication through recruitment of CEP7232
Avian interferon regulatory factor (IRF) family reunion: IRF3 and IRF9 found32
Histone acetyltransferase NAA40 modulates acetyl-CoA levels and lipid synthesis32
The temporal association of CapZ with early endosomes regulates endosomal trafficking and viral entry into host cells31
The mrp-3 gene is involved in haem efflux and detoxification in a blood-feeding nematode31
Proton export upregulates aerobic glycolysis31
Camelot: a computer-automated micro-extensometer with low-cost optical tracking31
Temporal dynamics of apoptosis-induced proliferation in pupal wing development: implications for regenerative ability31
An expanded odorant-binding protein mediates host cue detection in the parasitic wasp Baryscapus dioryctriae basis of the chromosome-level genome assembly analysis31
Plasmodium yoelii iron transporter PyDMT1 interacts with host ferritin and is required in full activity for malarial pathogenesis31
Insights into the formation and diversification of a novel chiropteran wing membrane from embryonic development31
Temperature-dependent dynamics of energy stores in Drosophila31
Atomic force microscopy reveals involvement of the cell envelope in biomechanical properties of sickle erythrocytes30
Population transcriptogenomics highlights impaired metabolism and small population sizes in tree frogs living in the Chernobyl Exclusion Zone30
Regenerating zebrafish scales express a subset of evolutionary conserved genes involved in human skeletal disease30
Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata30
A single-cell transcriptomic atlas of all cell types in the brain of 5xFAD Alzheimer mice in response to dietary inulin supplementation30
Rapid and sensitive single-cell RNA sequencing with SHERRY230
Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization30
Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions across generations to maintain fitness30
Articulating the “stem cell niche” paradigm through the lens of non-model aquatic invertebrates30
Rapid and high-throughput screening of proteolysis targeting chimeras using a dual-reporter system expressing fluorescence protein and luciferase29
Microplastics and soil microbiomes29
Maternal genetic origin of Chao Lay coastal maritime populations from Thailand29
Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks29
RNA multi-omics in single cells reveal rhythmical RNA reshaping during human and mouse oocyte maturation28
Differentially expressed chaperone genes reveal a stress response required for unidirectional regeneration in the basal chordate Ciona28
GnRH-driven FTO-mediated RNA m6A modification promotes gonadotropin synthesis and secretion28
A human iPSC-derived inducible neuronal model of Niemann-Pick disease, type C128
The pharyngeal taste organ of a blood-feeding insect functions in food recognition27
ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana27
Deep time extinction of largest insular ant predators and the first fossil Neoponera (Formicidae: Ponerinae) from Miocene age Dominican amber27
The impact of insertion bias into piRNA clusters on the invasion of transposable elements27
Rare but specific: 5-bp composite motifs define SMAD binding in BMP signaling27
Selection on the promoter regions plays an important role in complex traits during duck domestication27
Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron27
Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites27
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly27
PACmn for improved optogenetic control of intracellular cAMP27
How much do we know about the function of mammalian genes?27
Genomic analyses support locally derived crown-of-thorns seastar outbreaks in the Pacific27
Unravelling the hidden side of laundry: malodour, microbiome and pathogenome26
Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo26
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis26
Gene flow and an anomaly zone complicate phylogenomic inference in a rapidly radiated avian family (Prunellidae)26
The divergent ER-mitochondria encounter structures (ERMES) are conserved in parabasalids but lost in several anaerobic lineages with hydrogenosomes26
Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth26
Wheat inositol pyrophosphate kinase TaVIH2-3B modulates cell-wall composition and drought tolerance in Arabidopsis26
An ensemble deep learning framework for multi-class LncRNA subcellular localization with innovative encoding strategy26
A novel small molecule, AS1, reverses the negative hedonic valence of noxious stimuli26
Long non-coding RNA Tug1 modulates mitochondrial and myogenic responses to exercise in skeletal muscle25
The genome and comparative transcriptome of the euryhaline model ciliate Paramecium duboscqui reveal adaptations to environmental salinity25
Comparative genomics of Ascetosporea gives new insight into the evolutionary basis for animal parasitism in Rhizaria25
Two decades taken at speed: genomics, cell biology, ecology, and evolution of protists25
Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs25
Accurate RNA velocity estimation based on multibatch network reveals complex lineage in batch scRNA-seq data25
Bio-informed synthesis of marine-sourced indole derivatives: suppressing gram-negative bacteria biofilm and virulence25
Global patterns of genomic and phenotypic variation in the invasive harlequin ladybird24
Optimizing dsRNA sequences for RNAi in pest control and research with the dsRIP web platform24
The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB24
Single-cell RNA-seq analysis of rat molars reveals cell identity and driver genes associated with dental mesenchymal cell differentiation24
A LXG toxin stabilized by DUF4176 contributes to Streptococcus suis competition and pathogenicity24
Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites24
Transposable elements create distinct genomic niches for effector evolution among Magnaporthe oryzae lineages24
DNA methylation haplotype block signatures responding to Staphylococcus aureus subclinical mastitis and association with production and health traits24
A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics23
Morphology and mechanical behavior of diatoms in wet and dry states studied using nano-XCT23
Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems23
Non-invasive measurements of respiration and heart rate across wildlife species using Eulerian Video Magnification of infrared thermal imagery23
Ovarian ERβ cistrome and transcriptome reveal chromatin interaction with LRH-123
CircRNA identification and feature interpretability analysis23
Hybridisation has shaped a recent radiation of grass-feeding aphids23
Accurate prediction of drug-protein interactions by maintaining the original topological relationships among embeddings23
YModPred: an interpretable prediction method for multi-type RNA modification sites in S. cerevisiae based on deep learning22
CRISPR-based genome editing of a diurnal rodent, Nile grass rat (Arvicanthis niloticus)22
Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops22
Deciphering the roles of subcellular distribution and interactions involving the MEF2 binding region, the ankyrin repeat binding motif and the catalytic site of HDAC4 in Drosophila neuronal morphogene22
The Musa troglodytarum L. genome provides insights into the mechanism of non-climacteric behaviour and enrichment of carotenoids22
Weathered granites and soils harbour microbes with lanthanide-dependent methylotrophic enzymes22
Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture22
The neglected burden of chronic hypoxia on the resistance of glioblastoma multiforme to first-line therapies22
An extensional strain sensing mechanosome drives adhesion-independent platelet activation at supraphysiological hemodynamic gradients22
MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links22
Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP14022
Attraction and aversion of noctuid moths to fermented food sources coordinated by olfactory receptors from distinct gene families21
Evolutionary genomics of socially polymorphic populations of Pogonomyrmex californicus21
Cont-ID: detection of sample cross-contamination in viral metagenomic data21
Developing long-term conservation priority planning for medicinal plants in China by combining conservation status with diversity hotspot analyses and climate change prediction21
Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon21
Spatial and temporal heterogeneity in the lineage progression of fine oligodendrocyte subtypes21
orsai, the Drosophila homolog of human ETFRF1, links lipid catabolism to growth control21
The function of wing bullae in mayflies (Insecta: Ephemeroptera) reveals new insights into the early evolution of Pterygota21
Genetic evidence of tri-genealogy hypothesis on the origin of ethnic minorities in Yunnan21
CRISPR/Cas9-mediated gene knockout and interallelic gene conversion in human induced pluripotent stem cells using non-integrative bacteriophage-chimeric retrovirus-like particles21
The chromosome-level genome and key genes associated with mud-dwelling behavior and adaptations of hypoxia and noxious environments in loach (Misgurnus anguillicaudatus)21
Transcriptome analysis reveals PTBP1 as a key regulator of circRNA biogenesis21
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor21
Transcriptomic signatures of oxytosis/ferroptosis are enriched in Alzheimer’s disease21
Monoamine oxidases activity maintains endometrial monoamine homeostasis and participates in embryo implantation and development21
Plastid phylogenomic insights into relationships of all flowering plant families21
The protein phosphatase PP6 promotes RIPK1-dependent PANoptosis21
Two decades of population genomics: will we ever agree on bacterial species?20
PFTK1 kinase regulates axogenesis during development via RhoA activation20
VEGF-dependent testicular vascularisation involves MEK1/2 signalling and the essential angiogenesis factors, SOX7 and SOX1720
Lipases are differentially regulated by hormones to maintain free fatty acid homeostasis for insect brain development20
Evolution of left–right asymmetry in the sensory system and foraging behavior during adaptation to food-sparse cave environments20
Identifying effective evolutionary strategies-based protocol for uncovering reaction kinetic parameters under the effect of measurement noises20
Deep learning-based behavioral profiling of rodent stroke recovery20
The precedence effect in spatial hearing manifests in cortical neural population responses20
Author Correction: Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling20
Sex or poison? Genetic pest management in the 21st century20
Targeting of REST with rationally-designed small molecule compounds exhibits synergetic therapeutic potential in human glioblastoma cells20
Behavioral differences among domestic cats in the response to cat-attracting plants and their volatile compounds reveal a potential distinct mechanism of action for actinidine20
OrgaMapper: a robust and easy-to-use workflow for analyzing organelle positioning19
The rapid developments of membrane protein structure biology over the last two decades19
Genome-wide identification and analysis of a cotton secretome reveals its role in resistance against Verticillium dahliae19
A simple high-throughput method for automated detection of Drosophila melanogaster light-dependent behaviours19
The genomes of Vischeria oleaginous microalgae shed light on the molecular basis of hyper-accumulation of lipids19
Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves19
Protists and protistology in the Anthropocene: challenges for a climate and ecological crisis19
Modular evolution of secretion systems and virulence plasmids in a bacterial species complex19
Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout19
Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans19
Resolving biology’s dark matter: species richness, spatiotemporal distribution, and community composition of a dark taxon19
MvGraphDTA: multi-view-based graph deep model for drug-target affinity prediction by introducing the graphs and line graphs19
Latitude-driven adaptive evolution of body length in diverse pig breeds across China19
Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales19
Gene losses may contribute to subterranean adaptations in naked mole-rat and blind mole-rat18
TRPM4 regulates hilar mossy cell loss in temporal lobe epilepsy18
Toward efficient and high-fidelity metagenomic data from sub-nanogram DNA: evaluation of library preparation and decontamination methods18
Targeting the gut-lung axis by synbiotic feeding to infants in a randomized controlled trial18
Cranial base synostosis in mice caused by upregulation of Wnt following partial inhibition of Shh18
The Sino-Himalayan flora evolved from lowland biomes dominated by tropical floristic elements18
NeuroScale: evolutional scale-based protein language models enable prediction of neuropeptides18
Lessons in immune adaptations to hypoxia revealed by comparative and evolutionary physiology18
Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains18
The Automated Systematic Search Deduplicator (ASySD): a rapid, open-source, interoperable tool to remove duplicate citations in biomedical systematic reviews18
Nitrogen fixation by diverse diazotrophic communities can support population growth of arboreal ants18
ADARs regulate cuticle collagen expression and promote survival to pathogen infection18
The crotonylated and succinylated proteins of jujube involved in phytoplasma-stress responses18
Hyaluronidase-1-mediated glycocalyx impairment underlies endothelial abnormalities in polypoidal choroidal vasculopathy17
Highly distinct genetic programs for peripheral nervous system formation in chordates17
Publisher Correction: Attractive and repulsive effects of sensory history concurrently shape visual perception17
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates17
Epigenetic silencing and genome dynamics determine the fate of giant virus endogenizations in Acanthamoeba17
Screens in fly and beetle reveal vastly divergent gene sets required for developmental processes17
A novel aminotransferase gene and its regulator acquired in Saccharomyces by a horizontal gene transfer event17
20-Hydroxyecdysone counteracts insulin to promote programmed cell death by modifying phosphoglycerate kinase 117
Single-base resolution quantitative genome methylation analysis in the model bacterium Helicobacter pylori by enzymatic methyl sequencing (EM-Seq) reveals influence of strain, growth phase, and methyl17
Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome17
Analysis of co-isogenic prion protein deficient mice reveals behavioral deficits, learning impairment, and enhanced hippocampal excitability17
The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with a reduced posterior tagma17
Targeted C•G-to-T•A base editing with TALE-cytosine deaminases in plants17
Publisher Correction to: An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization17
An HSP90 cochaperone Ids2 maintains the stability of mitochondrial DNA and ATP synthase17
KLF13 promotes ferroptosis and chemosensitivity in lung adenocarcinoma17
Escherichia cryptic clade I is an emerging source of human intestinal pathogens17
Sex-limited chromosomes and non-reproductive traits17
Author Correction: Novel function of single-target regulator NorR involved in swarming motility and biofilm formation revealed in Vibrio alginolyticus16
Protein secretion zones during overexpression of amylase within the Gram-positive cell wall16
Experimental evidence for enzymatic cell wall dissolution in a microbial protoplast feeder (Orciraptor agilis, Viridiraptoridae)16
FACT regulates pluripotency through proximal and distal regulation of gene expression in murine embryonic stem cells16
MultiCycPermea: accurate and interpretable prediction of cyclic peptide permeability using a multimodal image-sequence model16
AmpHGT: expanding prediction of antimicrobial activity in peptides containing non-canonical amino acids using multi-view constrained heterogeneous graph transformer16
Taxonomy-aware, sequence similarity ranking reliably predicts phage–host relationships16
Deficient DNA base-excision repair in the forebrain leads to a sex-specific anxiety-like phenotype in mice16
Gram-negative bacteria resist antimicrobial agents by a DzrR-mediated envelope stress response16
The protein aggregation inhibitor YAT2150 has potent antimalarial activity in Plasmodium falciparum in vitro cultures16
Folate regulates RNA m5C modification and translation in neural stem cells16
Nuclear lamina component KAKU4 regulates chromatin states and transcriptional regulation in the Arabidopsis genome16
Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons16
A novel protein encoded by circRsrc1 regulates mitochondrial ribosome assembly and translation during spermatogenesis16
Nuclear receptor RXRα binds the precursor of miR-103 to inhibit its maturation16
Unveiling the ventral morphology of a rare early Cambrian great appendage arthropod from the Chengjiang biota of China16
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis16
Ephrin-B2 deletion in GABAergic neurons induces cognitive deficits associated with single-nucleus transcriptomic differences in the prefrontal cortex16
Griottes: a generalist tool for network generation from segmented tissue images16
Blueprints for healing: central nervous system regeneration in zebrafish and neonatal mice16
Novel high-resolution targeted sequencing of the cervicovaginal microbiome16
The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors16
Wide-scale geographical analysis of genetic ancestry in the South African Coloured population15
PBertKla: a protein large language model for predicting human lysine lactylation sites15
Female factors modulate Sex Peptide’s association with sperm in Drosophila melanogaster15
A CD24+CD271+ melanoma cancer stem cell possesses hybrid characteristics of its single marker counterparts and promotes invasion and therapeutic resistance15
Two zinc finger proteins, VdZFP1 and VdZFP2, interact with VdCmr1 to promote melanized microsclerotia development and stress tolerance in Verticillium dahliae15
Reduced intestinal lipid absorption improves glucose metabolism in aged G2-Terc knockout mice15
Ancient genomes from the Tang Dynasty capital reveal the genetic legacy of trans-Eurasian communication at the eastern end of Silk Road15
Guanine crystal formation by bacteria15
Global phylogenomic assessment of Leptoseris and Agaricia reveals substantial undescribed diversity at mesophotic depths15
Differentiated adaptative genetic architecture and language-related demographical history in South China inferred from 619 genomes from 56 populations15
Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments15
Stress decreases spermatozoa quality and induces molecular alterations in zebrafish progeny15
HNF-DDA: subgraph contrastive-driven transformer-style heterogeneous network embedding for drug–disease association prediction15
Dissecting thrombus-directed chemotaxis and random movement in neutrophil near-thrombus motion in flow chambers15
Co-option of the limb patterning program in cephalopod eye development15
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes15
Chronic sleep deprivation disturbs energy balance modulated by suprachiasmatic nucleus efferents in mice15
A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity15
Attention to visual motion suppresses neuronal and behavioral sensitivity in nearby feature space15
Comparative macrogenomics reveal plateau adaptation of gut microbiome in cervids15
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