BMC Biology

Papers
(The TQCC of BMC Biology is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-02-01 to 2024-02-01.)
ArticleCitations
An updated tribal classification of Lamiaceae based on plastome phylogenomics113
Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions106
Plastid phylogenomic insights into relationships of all flowering plant families101
X-ray computed tomography in life sciences89
Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome85
A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici85
Tandem gene duplications drive divergent evolution of caffeine and crocin biosynthetic pathways in plants81
Plasma membrane integrity: implications for health and disease81
Multiple links between 5-methylcytosine content of mRNA and translation79
Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly75
ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone68
Modified nucleic acids: replication, evolution, and next-generation therapeutics67
Modelling the suppression of a malaria vector using a CRISPR-Cas9 gene drive to reduce female fertility63
Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions59
Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium59
Performance analysis of novel toxin-antidote CRISPR gene drive systems59
Winter is coming: the future of cryopreservation56
The wild species genome ancestry of domestic chickens55
New targeted approaches for epigenetic age predictions51
A tissue level atlas of the healthy human virome49
FGF-2 promotes angiogenesis through a SRSF1/SRSF3/SRPK1-dependent axis that controls VEGFR1 splicing in endothelial cells49
The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia49
Genome-enabled insights into the biology of thrips as crop pests48
Contaminant DNA in bacterial sequencing experiments is a major source of false genetic variability47
The replication machinery of LUCA: common origin of DNA replication and transcription46
Prokaryotic virus host predictor: a Gaussian model for host prediction of prokaryotic viruses in metagenomics46
Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans43
Long-term live imaging and multiscale analysis identify heterogeneity and core principles of epithelial organoid morphogenesis43
Differential loss of effector genes in three recently expanded pandemic clonal lineages of the rice blast fungus43
Genome-wide pQTL analysis of protein expression regulatory networks in the human liver43
Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids43
Unraveling the molecular interactions involved in phase separation of glucocorticoid receptor43
Reorganization of the 3D chromatin architecture of rice genomes during heat stress42
The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome42
Extreme mobility of the world’s largest flying mammals creates key challenges for management and conservation41
The rise of diversity in metabolic platforms across the Candidate Phyla Radiation41
Putative ligand binding sites of two functionally characterized bark beetle odorant receptors40
Protein assembly systems in natural and synthetic biology40
Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation39
ACBE, a new base editor for simultaneous C-to-T and A-to-G substitutions in mammalian systems39
Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification38
Discordant evolution of mitochondrial and nuclear yeast genomes at population level38
Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates38
Large-scale discovery of male reproductive tract-specific genes through analysis of RNA-seq datasets37
The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress37
Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens37
Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.)36
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest36
Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner36
Paxillin mediates ATP-induced activation of P2X7 receptor and NLRP3 inflammasome35
Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis35
The transposable element-rich genome of the cereal pest Sitophilus oryzae35
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp34
The quail genome: insights into social behaviour, seasonal biology and infectious disease response34
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion33
Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondii33
Impact of COVID-19 on early career scientists: an optimistic guide for the future33
Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data33
Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexity32
Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells32
Stimulus-specific behavioral responses of zebrafish to a large range of odors exhibit individual variability32
Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals32
Characterization of a novel type of carbonic anhydrase that acts without metal cofactors32
Evolutionary analyses of the gasdermin family suggest conserved roles in infection response despite loss of pore-forming functionality32
Fluid shear stress enhances T cell activation through Piezo132
Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns31
Measuring and modeling energy and power consumption in living microbial cells with a synthetic ATP reporter31
Transposon-induced epigenetic silencing in the X chromosome as a novel form of dmrt1 expression regulation during sex determination in the fighting fish31
Towards open, reliable, and transparent ecology and evolutionary biology31
A metabolic switch regulates the transition between growth and diapause in C. elegans30
Oxidative stress mediates thalidomide-induced pain by targeting peripheral TRPA1 and central TRPV429
Sorting and packaging of RNA into extracellular vesicles shape intracellular transcript levels29
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family29
Association of Bacteroides acidifaciens relative abundance with high-fibre diet-associated radiosensitisation29
Gut bacterial deamination of residual levodopa medication for Parkinson’s disease29
Comprehensive transcriptome and methylome analysis delineates the biological basis of hair follicle development and wool-related traits in Merino sheep28
DNA methyltransferase 3a mediates developmental thermal plasticity28
Development of an efficient and precise adenine base editor (ABE) with expanded target range in allotetraploid cotton (Gossypium hirsutum)28
Identification of berberine as a novel drug for the treatment of multiple myeloma via targeting UHRF128
Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats27
Conventional laboratory housing increases morbidity and mortality in research rodents: results of a meta-analysis27
Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human27
LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images27
Modelling the Wolbachia incompatible insect technique: strategies for effective mosquito population elimination27
Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans26
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals26
Engineered sex ratio distortion by X-shredding in the global agricultural pest Ceratitis capitata26
Identification of African swine fever virus-like elements in the soft tick genome provides insights into the virus’ evolution26
A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity26
Articulating the “stem cell niche” paradigm through the lens of non-model aquatic invertebrates25
Bioengineered human skeletal muscle capable of functional regeneration25
Genomic history of the Italian population recapitulates key evolutionary dynamics of both Continental and Southern Europeans25
A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics25
A versatile contribution of both aminopeptidases N and ABC transporters to Bt Cry1Ac toxicity in the diamondback moth25
Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution25
Modeling confinement and reversibility of threshold-dependent gene drive systems in spatially-explicit Aedes aegypti populations25
Dynamic and reversible DNA methylation changes induced by genome separation and merger of polyploid wheat24
Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps24
Precise base editing with CC context-specificity using engineered human APOBEC3G-nCas9 fusions24
Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites24
Pathologic tau conformer ensembles induce dynamic, liquid-liquid phase separation events at the nuclear envelope23
Comparative 3D genome architecture in vertebrates23
Wonky whales: the evolution of cranial asymmetry in cetaceans23
TDP-43 prevents retrotransposon activation in the Drosophila motor system through regulation of Dicer-2 activity23
Persistent DNA damage triggers activation of the integrated stress response to promote cell survival under nutrient restriction23
Aerodynamics and motor control of ultrasonic vocalizations for social communication in mice and rats23
A unified evolutionary origin for the ubiquitous protein transporters SecY and YidC23
Resilin matrix distribution, variability and function in Drosophila22
Large-scale genomic analysis reveals the genetic cost of chicken domestication22
Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis22
Monophyletic blowflies revealed by phylogenomics22
Relationship between oxygen consumption and neuronal activity in a defined neural circuit21
Neuronal cell-based high-throughput screen for enhancers of mitochondrial function reveals luteolin as a modulator of mitochondria-endoplasmic reticulum coupling21
Genome-scale CRISPR screening at high sensitivity with an empirically designed sgRNA library20
Mangroves are an overlooked hotspot of insect diversity despite low plant diversity20
An essential vesicular-trafficking phospholipase mediates neutral lipid synthesis and contributes to hemozoin formation in Plasmodium falciparum20
Nucleus size and DNA accessibility are linked to the regulation of paraspeckle formation in cellular differentiation20
Divergent camptothecin biosynthetic pathway in Ophiorrhiza pumila20
Genomic analysis of field pennycress (Thlaspi arvense) provides insights into mechanisms of adaptation to high elevation20
Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics20
Waking experience modulates sleep need in mice20
Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo20
The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching20
Stomatal conductance limited the CO2 response of grassland in the last century20
Neuron ID dataset facilitates neuronal annotation for whole-brain activity imaging of C. elegans19
Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant19
TORC1 regulates the transcriptional response to glucose and developmental cycle via the Tap42-Sit4-Rrd1/2 pathway in Saccharomyces cerevisiae19
Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity19
The mitochondrially-localized nucleoside diphosphate kinase D (NME4) is a novel metastasis suppressor19
Sensory adaptations reshaped intrinsic factors underlying morphological diversification in bats19
Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells19
Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q3119
Effects of immune challenge on expression of life-history and immune trait expression in sexually reproducing metazoans—a meta-analysis19
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates18
Single-cell RNA-seq reveals a concomitant delay in differentiation and cell cycle of aged hematopoietic stem cells18
Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection18
Defining rules governing recognition and Fc-mediated effector functions to the HIV-1 co-receptor binding site18
The CBP KIX domain regulates long-term memory and circadian activity18
Deep learning-based behavioral profiling of rodent stroke recovery18
TDP-43 promotes the formation of neuromuscular synapses through the regulation of Disc-large expression in Drosophila skeletal muscles18
Symbiont transmission in marine sponges: reproduction, development, and metamorphosis18
The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control18
A simple threat-detection strategy in mice18
MIEF1/2 orchestrate mitochondrial dynamics through direct engagement with both the fission and fusion machineries18
Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution18
Mapping the past, present and future research landscape of paternal effects18
Mechanical force-induced morphology changes in a human fungal pathogen17
Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate17
Protein kinase A controls yeast growth in visible light17
Aneuploidy-induced proteotoxic stress can be effectively tolerated without dosage compensation, genetic mutations, or stress responses17
Feedback inhibition of AMT1 NH4+-transporters mediated by CIPK15 kinase17
DHA alleviates diet-induced skeletal muscle fiber remodeling via FTO/m6A/DDIT4/PGC1α signaling17
Differing effects of size and lifestyle on bone structure in mammals17
Segmentation, tracking and cell cycle analysis of live-cell imaging data with Cell-ACDC17
20E-mediated regulation of BmKr-h1 by BmKRP promotes oocyte maturation17
Time of day as a critical variable in biology17
Crystal structure of the yeast heterodimeric ADAT2/3 deaminase17
DNA methylation atlas and machinery in the developing and regenerating annelid Platynereis dumerilii17
MATISSE: a method for improved single cell segmentation in imaging mass cytometry17
Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma17
Verticillium dahliae CFEM proteins manipulate host immunity and differentially contribute to virulence17
Ultrastructural and molecular analysis of the origin and differentiation of cells mediating brittle star skeletal regeneration17
Cell culture-based production and in vivo characterization of purely clonal defective interfering influenza virus particles17
Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum17
Innate antiviral defense demonstrates high energetic efficiency in a bony fish17
Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout17
Analysis of urinary exosomal metabolites identifies cardiovascular risk signatures with added value to urine analysis17
Using spatial genetics to quantify mosquito dispersal for control programs17
Dynamic genetic differentiation drives the widespread structural and functional convergent evolution of snake venom proteinaceous toxins16
Vickermania gen. nov., trypanosomatids that use two joined flagella to resist midgut peristaltic flow within the fly host16
Linked-read sequencing identifies abundant microinversions and introgression in the arboviral vector Aedes aegypti16
Using a chimeric respiratory chain and EPR spectroscopy to determine the origin of semiquinone species previously assigned to mitochondrial complex I16
H3K27 modifiers regulate lifespan in C. elegans in a context-dependent manner16
Direct evidence for transport of RNA from the mouse brain to the germline and offspring16
Experimental infection with the hookworm, Necator americanus, is associated with stable gut microbial diversity in human volunteers with relapsing multiple sclerosis16
An optimized base editor with efficient C-to-T base editing in zebrafish16
m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation16
DDX39B interacts with the pattern recognition receptor pathway to inhibit NF-κB and sensitize to alkylating chemotherapy16
Automated identification of the mouse brain’s spatial compartments from in situ sequencing data16
Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models16
Temporospatial shifts within commercial laboratory mouse gut microbiota impact experimental reproducibility16
Ionotropic receptors in the turnip moth Agrotis segetum respond to repellent medium-chain fatty acids16
Both Conifer II and Gnetales are characterized by a high frequency of ancient mitochondrial gene transfer to the nuclear genome16
Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri16
Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning16
Regenerating zebrafish scales express a subset of evolutionary conserved genes involved in human skeletal disease16
LEA motifs promote desiccation tolerance in vivo16
The effect of calorie intake, fasting, and dietary composition on metabolic health and gut microbiota in mice16
Lack of drug-induced post-retrieval amnesia for auditory fear memories in rats15
The ESCRT-III isoforms CHMP2A and CHMP2B display different effects on membranes upon polymerization15
Phylotranscriptomics points to multiple independent origins of multicellularity and cellular differentiation in the volvocine algae15
Sea urchin larvae utilize light for regulating the pyloric opening15
Genome of the pincer wasp Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation15
Functional analyses of phosphatidylserine/PI(4)P exchangers with diverse lipid species and membrane contexts reveal unanticipated rules on lipid transfer15
Natural food intake patterns have little synchronizing effect on peripheral circadian clocks15
Short single-stranded DNAs with putative non-canonical structures comprise a new class of plasma cell-free DNA15
Self-organising human gonads generated by a Matrigel-based gradient system15
DNA interference is controlled by R-loop length in a type I-F1 CRISPR-Cas system15
Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model15
Adipoclast: a multinucleated fat-eating macrophage14
Practical real-time MEG-based neural interfacing with optically pumped magnetometers14
Genome plasticity in Paramecium bursaria revealed by population genomics14
Mutant resources for functional genomics in Dictyostelium discoideum using REMI-seq technology14
Divergent CPEB prion-like domains reveal different assembly mechanisms for a generic amyloid-like fold14
The evolutionarily conserved ESRE stress response network is activated by ROS and mitochondrial damage14
Pancreatic and intestinal endocrine cells in zebrafish share common transcriptomic signatures and regulatory programmes14
Boundaries potentiate polycomb response element-mediated silencing14
The selectivity filter of the mitochondrial protein import machinery14
A phenomics approach for antiviral drug discovery14
Developing long-term conservation priority planning for medicinal plants in China by combining conservation status with diversity hotspot analyses and climate change prediction14
Nutritional status impacts dengue virus infection in mice14
Apoptosis is not conserved in plants as revealed by critical examination of a model for plant apoptosis-like cell death14
Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence14
Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis14
Engineered Cas12a-Plus nuclease enables gene editing with enhanced activity and specificity14
Modular evolution of secretion systems and virulence plasmids in a bacterial species complex14
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses14
The relationship between sternum variation and mode of locomotion in birds14
Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity14
Unprecedented organelle genomic variations in morning glories reveal independent evolutionary scenarios of parasitic plants and the diversification of plant mitochondrial complexes14
Conservation and trans-regulation of histone modification in the A and B subgenomes of polyploid wheat during domestication and ploidy transition13
The dorsoanterior brain of adult amphioxus shares similarities in expression profile and neuronal composition with the vertebrate telencephalon13
Taxonomy-aware, sequence similarity ranking reliably predicts phage–host relationships13
A universal power law for modelling the growth and form of teeth, claws, horns, thorns, beaks, and shells13
A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants13
Ca2+ mobilization-dependent reduction of the endoplasmic reticulum lumen is due to influx of cytosolic glutathione13
Prediction of the incubation period for COVID-19 and future virus disease outbreaks13
Retargeting azithromycin analogues to have dual-modality antimalarial activity13
Disruption of left-right axis specification in Ciona induces molecular, cellular, and functional defects in asymmetric brain structures13
The roles of hybridization and habitat fragmentation in the evolution of Brazil’s enigmatic longwing butterflies, Heliconius nattereri and H. hermathena13
Some like it hot: population-specific adaptations in venom production to abiotic stressors in a widely distributed cnidarian13
The evolution of pelvic canal shape and rotational birth in humans13
Current cancer driver variant predictors learn to recognize driver genes instead of functional variants13
Genetic dissection of the mitochondrial lipoylation pathway in yeast13
Malignant transformation and genetic alterations are uncoupled in early colorectal cancer progression13
The C-terminal region of the oxidoreductase MIA40 stabilizes its cytosolic precursor during mitochondrial import13
Inheritance of the reduced mitochondria of Giardia intestinalis is coupled to the flagellar maturation cycle13
Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes13
Circadian rhythms in the plant host influence rhythmicity of rhizosphere microbiota13
Anaerobic derivates of mitochondria and peroxisomes in the free-living amoeba Pelomyxa schiedti revealed by single-cell genomics13
Invasive snails, parasite spillback, and potential parasite spillover drive parasitic diseases of Hippopotamus amphibius in artificial lakes of Zimbabwe13
The amygdala modulates prepulse inhibition of the auditory startle reflex through excitatory inputs to the caudal pontine reticular nucleus13
Single-cell transcriptomics reveals the effect of PD-L1/TGF-β blockade on the tumor microenvironment13
Spatial and temporal heterogeneity in the lineage progression of fine oligodendrocyte subtypes13
Genome-wide annotation of protein-coding genes in pig13
Intradiol ring cleavage dioxygenases from herbivorous spider mites as a new detoxification enzyme family in animals13
CloneSifter: enrichment of rare clones from heterogeneous cell populations12
Stability of Begomoviral pathogenicity determinant βC1 is modulated by mutually antagonistic SUMOylation and SIM interactions12
Population structure and pharmacogenomic risk stratification in the United States12
Single-cell RNA sequencing of the retina in a model of retinitis pigmentosa reveals early responses to degeneration in rods and cones12
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