BMC Biology

Papers
(The TQCC of BMC Biology is 12. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)
ArticleCitations
Changing turn-over rates regulate abundance of tryptophan, GS biosynthesis, IAA transport and photosynthesis proteins in Arabidopsis growth defense transitions81
Functional characterization of the second feedback loop in the circadian clock of the Antarctic krill Euphausia superba81
Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage69
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation65
Hibernation reduces GABA signaling in the brainstem to enhance motor activity of breathing at cool temperatures64
Circannual breeding and methylation are impacted by the equinox in Peromyscus63
Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F1 hybrids62
Machine learning combined with omics-based approaches reveals T-lymphocyte cellular fate imbalance in abdominal aortic aneurysm62
Histone modifications and DNA methylation act cooperatively in regulating symbiosis genes in the sea anemone Aiptasia60
Cuticular competing endogenous RNAs regulate insecticide penetration and resistance in a major agricultural pest58
Wolbachia incompatible insect technique program optimization over large spatial scales using a process-based model of mosquito metapopulation dynamics58
Multidimensional associations between nutrient intake and healthy ageing in humans58
Polycomb contraction differentially regulates terminal human hematopoietic differentiation programs56
DualNetM: an adaptive dual network framework for inferring functional-oriented markers54
A whole-body atlas of BMP signaling activity in an adult sea anemone53
Assessing the role of Piscine orthoreovirus in disease and the associated risk for wild Pacific salmon51
Flexible and stretchable polymer optical fibers for chronic brain and vagus nerve optogenetic stimulations in free-behaving animals50
Fossil-calibrated molecular clock data enable reconstruction of steps leading to differentiated multicellularity and anisogamy in the Volvocine algae50
Cdk5-mediated JIP1 phosphorylation regulates axonal outgrowth through Notch1 inhibition49
Incomplete lineage sorting and introgression among genera and species of Liliaceae tribe Tulipeae: insights from phylogenomics49
Integration of large and diverse angiosperm DNA fragments into Asian Gnetum mitogenomes49
Author Correction: Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution48
Single-cell transcriptomics and time-series metabolite profiling reveal the spatiotemporal regulation of flavonoid biosynthesis genes and phytohormone homeostasis by PAP1 in Arabidopsis46
GhAOS integrates circadian rhythm and jasmonic acid signaling to regulate high temperature stress responses in cotton and Arabidopsis45
The Sapria himalayana genome provides new insights into the lifestyle of endoparasitic plants44
Reconstructing the ancestral gene pool to uncover the origins and genetic links of Hmong–Mien speakers43
Experimental demonstration of tethered gene drive systems for confined population modification or suppression43
Investigating the characteristics of genes and variants associated with self-reported hearing difficulty in older adults in the UK Biobank42
A muscle exercise research revolution powered by -omics at single cell and nucleus resolution41
Personalised modelling of clinical heterogeneity between medium-chain acyl-CoA dehydrogenase patients41
Back to the roots, desiccation and radiation resistances are ancestral characters in bdelloid rotifers41
Increased interaction between endoplasmic reticulum and mitochondria following sleep deprivation40
Imprinted Grb10, encoding growth factor receptor bound protein 10, regulates fetal growth independently of the insulin-like growth factor type 1 receptor (Igf1r) and insulin receptor (Insr) genes39
Evolutionary dynamics of mitochondrial genomes and intracellular transfers among diploid and allopolyploid cotton species39
The genome and sex-dependent responses to temperature in the common yellow butterfly, Eurema hecabe39
Astrocytes in CA1 modulate schema establishment in the hippocampal-cortical neuron network39
The gut symbiont Sphingomonas mediates imidacloprid resistance in the important agricultural insect pest Aphis gossypii Glover39
Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress38
Next steps after airing disagreement on a scientific issue with policy implications: a meta-analysis, multi-lab replication and adversarial collaboration38
Dopamine modulates the retinal clock through melanopsin-dependent regulation of cholinergic waves during development37
Decidual stromal cells-derived exosomes incured insufficient migration and invasion of trophoblast because of abnormal ubiquitination and degradation of Snail mediated by miR-92b-3p/USP2836
Sexually dimorphic methylation patterns characterize the placenta and blood from extremely preterm newborns36
Microplastics and soil microbiomes35
Temporal dynamics of apoptosis-induced proliferation in pupal wing development: implications for regenerative ability35
CCHCR1-astrin interaction promotes centriole duplication through recruitment of CEP7235
Camelot: a computer-automated micro-extensometer with low-cost optical tracking35
Osteosarcoma tumors maintain intra-tumoral transcriptional heterogeneity during bone and lung colonization34
Maternal genetic origin of Chao Lay coastal maritime populations from Thailand34
An expanded odorant-binding protein mediates host cue detection in the parasitic wasp Baryscapus dioryctriae basis of the chromosome-level genome assembly analysis34
Differentially expressed chaperone genes reveal a stress response required for unidirectional regeneration in the basal chordate Ciona34
Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks34
Selection on the promoter regions plays an important role in complex traits during duck domestication34
A single-cell transcriptomic atlas of all cell types in the brain of 5xFAD Alzheimer mice in response to dietary inulin supplementation33
Plasmodium yoelii iron transporter PyDMT1 interacts with host ferritin and is required in full activity for malarial pathogenesis33
Proton export upregulates aerobic glycolysis32
Histone acetyltransferase NAA40 modulates acetyl-CoA levels and lipid synthesis32
Genomic insights into biased allele loss and increased gene numbers after genome duplication in autotetraploid Cyclocarya paliurus32
A unified evolutionary origin for the ubiquitous protein transporters SecY and YidC32
Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata32
Avian interferon regulatory factor (IRF) family reunion: IRF3 and IRF9 found32
Articulating the “stem cell niche” paradigm through the lens of non-model aquatic invertebrates32
Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions31
Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus31
Population transcriptogenomics highlights impaired metabolism and small population sizes in tree frogs living in the Chernobyl Exclusion Zone31
Rapid and sensitive single-cell RNA sequencing with SHERRY231
The mrp-3 gene is involved in haem efflux and detoxification in a blood-feeding nematode31
The temporal association of CapZ with early endosomes regulates endosomal trafficking and viral entry into host cells31
GnRH-driven FTO-mediated RNA m6A modification promotes gonadotropin synthesis and secretion31
Atomic force microscopy reveals involvement of the cell envelope in biomechanical properties of sickle erythrocytes31
TCA-cycle metabolites in the nucleus: drivers of chromatin and epigenetic control30
Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii30
ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana30
Insights into the formation and diversification of a novel chiropteran wing membrane from embryonic development29
The broad use of the Pm8 resistance gene in wheat resulted in hypermutation of the AvrPm8 gene in the powdery mildew pathogen29
Viral predation pressure on coral reefs29
Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions across generations to maintain fitness28
Rapid and high-throughput screening of proteolysis targeting chimeras using a dual-reporter system expressing fluorescence protein and luciferase28
Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron28
RNA multi-omics in single cells reveal rhythmical RNA reshaping during human and mouse oocyte maturation28
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance28
Temperature-dependent dynamics of energy stores in Drosophila28
Regenerating zebrafish scales express a subset of evolutionary conserved genes involved in human skeletal disease28
A systematic review of the development and application of home cage monitoring in laboratory mice and rats28
Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites27
Bio-informed synthesis of marine-sourced indole derivatives: suppressing gram-negative bacteria biofilm and virulence27
Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites27
Comparative genomics of Ascetosporea gives new insight into the evolutionary basis for animal parasitism in Rhizaria27
How much do we know about the function of mammalian genes?27
Rare but specific: 5-bp composite motifs define SMAD binding in BMP signaling27
Genomic analyses support locally derived crown-of-thorns seastar outbreaks in the Pacific27
Deep time extinction of largest insular ant predators and the first fossil Neoponera (Formicidae: Ponerinae) from Miocene age Dominican amber27
An ensemble deep learning framework for multi-class LncRNA subcellular localization with innovative encoding strategy26
Gene flow and an anomaly zone complicate phylogenomic inference in a rapidly radiated avian family (Prunellidae)26
Single-cell RNA-seq analysis of rat molars reveals cell identity and driver genes associated with dental mesenchymal cell differentiation26
Unravelling the hidden side of laundry: malodour, microbiome and pathogenome26
Transposable elements create distinct genomic niches for effector evolution among Magnaporthe oryzae lineages26
A LXG toxin stabilized by DUF4176 contributes to Streptococcus suis competition and pathogenicity26
Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly25
Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth25
Global patterns of genomic and phenotypic variation in the invasive harlequin ladybird25
Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo25
The divergent ER-mitochondria encounter structures (ERMES) are conserved in parabasalids but lost in several anaerobic lineages with hydrogenosomes25
The impact of insertion bias into piRNA clusters on the invasion of transposable elements25
Hybridisation has shaped a recent radiation of grass-feeding aphids25
Optimizing dsRNA sequences for RNAi in pest control and research with the dsRIP web platform25
Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs24
The genome and comparative transcriptome of the euryhaline model ciliate Paramecium duboscqui reveal adaptations to environmental salinity24
DNA methylation haplotype block signatures responding to Staphylococcus aureus subclinical mastitis and association with production and health traits24
CircRNA identification and feature interpretability analysis24
Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems24
Wheat inositol pyrophosphate kinase TaVIH2-3B modulates cell-wall composition and drought tolerance in Arabidopsis24
Two decades taken at speed: genomics, cell biology, ecology, and evolution of protists24
A novel small molecule, AS1, reverses the negative hedonic valence of noxious stimuli24
The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB24
CRISPR-based genome editing of a diurnal rodent, Nile grass rat (Arvicanthis niloticus)23
Long non-coding RNA Tug1 modulates mitochondrial and myogenic responses to exercise in skeletal muscle23
Non-invasive measurements of respiration and heart rate across wildlife species using Eulerian Video Magnification of infrared thermal imagery23
YModPred: an interpretable prediction method for multi-type RNA modification sites in S. cerevisiae based on deep learning23
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis23
Accurate RNA velocity estimation based on multibatch network reveals complex lineage in batch scRNA-seq data23
Morphology and mechanical behavior of diatoms in wet and dry states studied using nano-XCT23
Ovarian ERβ cistrome and transcriptome reveal chromatin interaction with LRH-123
MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links23
Accurate prediction of drug-protein interactions by maintaining the original topological relationships among embeddings23
The pharyngeal taste organ of a blood-feeding insect functions in food recognition23
A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics23
Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture23
Transcriptomic signatures of oxytosis/ferroptosis are enriched in Alzheimer’s disease22
Monoamine oxidases activity maintains endometrial monoamine homeostasis and participates in embryo implantation and development22
Modulation of macrophage inflammatory function through selective inhibition of the epigenetic reader protein SP14022
Genetic evidence of tri-genealogy hypothesis on the origin of ethnic minorities in Yunnan22
Attraction and aversion of noctuid moths to fermented food sources coordinated by olfactory receptors from distinct gene families22
Predator experience enhances giraffe vigilance to oxpecker alarm calls22
Cont-ID: detection of sample cross-contamination in viral metagenomic data22
Spatial and temporal heterogeneity in the lineage progression of fine oligodendrocyte subtypes21
Requirements for designing cluster randomised control trials to detect suppression of malaria vector population densities21
The function of wing bullae in mayflies (Insecta: Ephemeroptera) reveals new insights into the early evolution of Pterygota21
The protein phosphatase PP6 promotes RIPK1-dependent PANoptosis21
Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops21
Weathered granites and soils harbour microbes with lanthanide-dependent methylotrophic enzymes21
Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon21
Functional characterization of four opsins and two G alpha subtypes co-expressed in the molluscan rhabdomeric photoreceptor21
Deciphering the roles of subcellular distribution and interactions involving the MEF2 binding region, the ankyrin repeat binding motif and the catalytic site of HDAC4 in Drosophila neuronal morphogene21
Transcriptome analysis reveals PTBP1 as a key regulator of circRNA biogenesis21
Gene expression reveals the pancreas of Aselli as a critical organ for plasma cell differentiation in the Eurasian common shrew21
Enhancing viral dynamics modeling: reliable initial estimation and validity conditions for quasi-steady state approximation (QSSA)21
An extensional strain sensing mechanosome drives adhesion-independent platelet activation at supraphysiological hemodynamic gradients21
The Musa troglodytarum L. genome provides insights into the mechanism of non-climacteric behaviour and enrichment of carotenoids20
Targeting of REST with rationally-designed small molecule compounds exhibits synergetic therapeutic potential in human glioblastoma cells20
The chromosome-level genome and key genes associated with mud-dwelling behavior and adaptations of hypoxia and noxious environments in loach (Misgurnus anguillicaudatus)20
Identifying effective evolutionary strategies-based protocol for uncovering reaction kinetic parameters under the effect of measurement noises20
VEGF-dependent testicular vascularisation involves MEK1/2 signalling and the essential angiogenesis factors, SOX7 and SOX1720
PFTK1 kinase regulates axogenesis during development via RhoA activation20
Evolutionary genomics of socially polymorphic populations of Pogonomyrmex californicus20
A novel method for effectively selecting fragments not associated with restriction sites for whole-genome genotyping20
CRISPR/Cas9-mediated gene knockout and interallelic gene conversion in human induced pluripotent stem cells using non-integrative bacteriophage-chimeric retrovirus-like particles20
Evolution of left–right asymmetry in the sensory system and foraging behavior during adaptation to food-sparse cave environments20
The precedence effect in spatial hearing manifests in cortical neural population responses20
Sex or poison? Genetic pest management in the 21st century20
Developing long-term conservation priority planning for medicinal plants in China by combining conservation status with diversity hotspot analyses and climate change prediction20
The neglected burden of chronic hypoxia on the resistance of glioblastoma multiforme to first-line therapies20
orsai, the Drosophila homolog of human ETFRF1, links lipid catabolism to growth control20
Author Correction: Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling20
Genome-wide identification and analysis of a cotton secretome reveals its role in resistance against Verticillium dahliae20
Two decades of population genomics: will we ever agree on bacterial species?20
Deep learning-based behavioral profiling of rodent stroke recovery19
The Automated Systematic Search Deduplicator (ASySD): a rapid, open-source, interoperable tool to remove duplicate citations in biomedical systematic reviews19
Nitrogen fixation by diverse diazotrophic communities can support population growth of arboreal ants19
OrgaMapper: a robust and easy-to-use workflow for analyzing organelle positioning19
Latitude-driven adaptive evolution of body length in diverse pig breeds across China19
TRPM4 regulates hilar mossy cell loss in temporal lobe epilepsy19
ADARs regulate cuticle collagen expression and promote survival to pathogen infection19
Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves19
Lessons in immune adaptations to hypoxia revealed by comparative and evolutionary physiology19
20-Hydroxyecdysone counteracts insulin to promote programmed cell death by modifying phosphoglycerate kinase 119
Gene losses may contribute to subterranean adaptations in naked mole-rat and blind mole-rat19
A simple high-throughput method for automated detection of Drosophila melanogaster light-dependent behaviours19
Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout19
Cranial base synostosis in mice caused by upregulation of Wnt following partial inhibition of Shh19
NeuroScale: evolutional scale-based protein language models enable prediction of neuropeptides19
The crotonylated and succinylated proteins of jujube involved in phytoplasma-stress responses19
The rapid developments of membrane protein structure biology over the last two decades19
Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans19
Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains18
The Sino-Himalayan flora evolved from lowland biomes dominated by tropical floristic elements18
Protists and protistology in the Anthropocene: challenges for a climate and ecological crisis18
Toward efficient and high-fidelity metagenomic data from sub-nanogram DNA: evaluation of library preparation and decontamination methods18
The genomes of Vischeria oleaginous microalgae shed light on the molecular basis of hyper-accumulation of lipids18
Resolving biology’s dark matter: species richness, spatiotemporal distribution, and community composition of a dark taxon18
Ortho2Web: a workflow for disentangling the roles of hybridization and allopolyploidization in reticulation within Campanulaceae18
A reference metagenome sequence of the lichen Cladonia rangiformis18
Modular evolution of secretion systems and virulence plasmids in a bacterial species complex18
Ephrin-B2 deletion in GABAergic neurons induces cognitive deficits associated with single-nucleus transcriptomic differences in the prefrontal cortex17
Gram-negative bacteria resist antimicrobial agents by a DzrR-mediated envelope stress response17
KLF13 promotes ferroptosis and chemosensitivity in lung adenocarcinoma17
Targeted C•G-to-T•A base editing with TALE-cytosine deaminases in plants17
Behavioral differences among domestic cats in the response to cat-attracting plants and their volatile compounds reveal a potential distinct mechanism of action for actinidine17
Publisher Correction: Attractive and repulsive effects of sensory history concurrently shape visual perception17
Sex-limited chromosomes and non-reproductive traits17
Escherichia cryptic clade I is an emerging source of human intestinal pathogens17
The protein aggregation inhibitor YAT2150 has potent antimalarial activity in Plasmodium falciparum in vitro cultures17
Highly distinct genetic programs for peripheral nervous system formation in chordates17
Lipases are differentially regulated by hormones to maintain free fatty acid homeostasis for insect brain development17
MvGraphDTA: multi-view-based graph deep model for drug-target affinity prediction by introducing the graphs and line graphs17
Publisher Correction to: An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization17
Glutamic acid-lysine (EK) rich motif of RabD2 self-associates and regulates adhesion through multivesicular bodies in Entamoeba histolytica17
Griottes: a generalist tool for network generation from segmented tissue images17
Protein secretion zones during overexpression of amylase within the Gram-positive cell wall17
The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors17
Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales17
Targeting the gut-lung axis by synbiotic feeding to infants in a randomized controlled trial17
Single-base resolution quantitative genome methylation analysis in the model bacterium Helicobacter pylori by enzymatic methyl sequencing (EM-Seq) reveals influence of strain, growth phase, and methyl17
Epigenetic silencing and genome dynamics determine the fate of giant virus endogenizations in Acanthamoeba17
Screens in fly and beetle reveal vastly divergent gene sets required for developmental processes16
A W chromosome-derived feminizing piRNA in pyralid moths demonstrates convergent evolution for primary sex determination signals in Lepidoptera16
Deficient DNA base-excision repair in the forebrain leads to a sex-specific anxiety-like phenotype in mice16
Nuclear receptor RXRα binds the precursor of miR-103 to inhibit its maturation16
The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with a reduced posterior tagma16
Nuclear lamina component KAKU4 regulates chromatin states and transcriptional regulation in the Arabidopsis genome16
MultiCycPermea: accurate and interpretable prediction of cyclic peptide permeability using a multimodal image-sequence model16
Blueprints for healing: central nervous system regeneration in zebrafish and neonatal mice16
An HSP90 cochaperone Ids2 maintains the stability of mitochondrial DNA and ATP synthase16
FACT regulates pluripotency through proximal and distal regulation of gene expression in murine embryonic stem cells16
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis16
Analysis of co-isogenic prion protein deficient mice reveals behavioral deficits, learning impairment, and enhanced hippocampal excitability16
Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates16
A novel protein encoded by circRsrc1 regulates mitochondrial ribosome assembly and translation during spermatogenesis16
Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons16
Experimental evidence for enzymatic cell wall dissolution in a microbial protoplast feeder (Orciraptor agilis, Viridiraptoridae)16
A novel aminotransferase gene and its regulator acquired in Saccharomyces by a horizontal gene transfer event16
Novel high-resolution targeted sequencing of the cervicovaginal microbiome16
Author Correction: Novel function of single-target regulator NorR involved in swarming motility and biofilm formation revealed in Vibrio alginolyticus16
Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome16
Hyaluronidase-1-mediated glycocalyx impairment underlies endothelial abnormalities in polypoidal choroidal vasculopathy16
Folate regulates RNA m5C modification and translation in neural stem cells16
AmpHGT: expanding prediction of antimicrobial activity in peptides containing non-canonical amino acids using multi-view constrained heterogeneous graph transformer16
Unveiling the ventral morphology of a rare early Cambrian great appendage arthropod from the Chengjiang biota of China16
Correction: Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks15
Asymmetric and parallel subgenome selection co-shape common carp domestication15
Ancient genomes in Southwest China revealed genetic interactions among diverse populations in the historical period15
Differentiated adaptative genetic architecture and language-related demographical history in South China inferred from 619 genomes from 56 populations15
Author Correction: Genomic characterization of the world’s longest selection experiment in mouse reveals the complexity of polygenic traits15
Attention to visual motion suppresses neuronal and behavioral sensitivity in nearby feature space15
A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity15
Stress decreases spermatozoa quality and induces molecular alterations in zebrafish progeny15
Unveiling cell-type-specific microRNA networks through alternative polyadenylation in glioblastoma15
Guanine crystal formation by bacteria15
Dissecting thrombus-directed chemotaxis and random movement in neutrophil near-thrombus motion in flow chambers15
Comparative macrogenomics reveal plateau adaptation of gut microbiome in cervids15
PBertKla: a protein large language model for predicting human lysine lactylation sites15
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